---

	Loci	Transcripts					Exon			Intron			AA			Curated by literature
		All	Protein-coding	Non-coding	Multi-exon	Single-exon	Mean	Min.	Max	Mean	Min.	Max	Mean	Min.	Max	Loci	Transcripts
chr01	5895	6488	6225	263	4281	2207	1463.3	50	16029	2056.5	5	30641	327.1	19	5342	963	1007
chr02	4703	5212	5004	208	3487	1725	1491.4	46	10630	2069.6	6	22411	329.1	22	3235	757	782
chr03	5070	5601	5360	241	3786	1815	1462.8	47	10428	2006.4	6	28832	328.2	20	3473	848	879
chr04	3908	4302	4129	173	2769	1533	1462.8	47	14618	2025.7	6	29631	322.9	15	4735	617	645
chr05	3478	3832	3691	141	2432	1400	1395.7	54	7661	2031.1	6	57026	314.6	24	2459	528	547
chr06	3614	3962	3806	156	2563	1399	1443.1	46	13516	2003.9	6	26556	321.9	25	4363	571	596
chr07	3382	3692	3569	123	2399	1293	1403.1	48	7487	1983.1	6	25011	321	19	2259	472	498
chr08	3089	3376	3244	132	2127	1249	1389.6	48	7607	2063.8	6	31291	308.6	21	2258	441	458
chr09	2518	2760	2663	97	1737	1023	1401.7	41	15207	2115.9	9	21577	313.2	19	5066	374	395
chr10	2459	2655	2534	121	1643	1012	1397.8	48	16366	2031.2	6	40565	317.2	22	5373	313	322
chr11	2982	3201	3072	129	1951	1250	1478	54	6556	2270.7	6	32958	328.2	17	1706	486	510
chr12	2642	2847	2738	109	1790	1057	1428.6	48	11672	2112.4	6	20755	317.9	21	3643	377	392
Total	43740	47928	46035	1893	30965	16963	1441.1	41	16366	2056.3	5	57026	322	15	5373	6747	7031

Gene set (genes supported by FL-cDNAs, ESTs, proteins or literatures)

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	Loci	Transcripts					Exon			Intron			AA			Curated by literature
		All	Protein-coding	Non-coding	Multi-exon	Single-exon	Mean	Min.	Max	Mean	Min.	Max	Mean	Min.	Max	Loci	Transcripts
chr01	4992	5585	5322	263	4025	1560	1613.6	50	16029	2132.2	5	30641	352.5	19	5342	963	1007
chr02	3997	4506	4298	208	3278	1228	1644.9	46	10630	2148.1	6	22411	355.2	22	3235	757	782
chr03	4353	4884	4643	241	3575	1309	1600.5	47	10428	2074.2	6	28832	351.9	20	3473	848	879
chr04	3193	3587	3414	173	2536	1051	1640.7	47	14618	2131.1	6	29631	350.8	15	4735	617	645
chr05	2862	3216	3075	141	2254	962	1562.3	54	7661	2116.5	6	57026	342.5	24	2459	528	547
chr06	2991	3339	3183	156	2371	968	1621.6	46	13516	2094.9	6	26556	353.3	25	4363	571	596
chr07	2750	3060	2937	123	2186	874	1586.5	48	7487	2084.6	6	25011	353.2	19	2259	472	498
chr08	2485	2772	2640	132	1941	831	1579.7	48	7607	2186.9	6	31291	339.9	21	2258	441	458
chr09	1995	2237	2140	97	1589	648	1607.1	41	15207	2223.8	9	21577	347.2	19	5066	374	395
chr10	1997	2193	2072	121	1515	678	1575.8	48	16366	2126.8	6	40565	346.9	22	5373	313	322
chr11	2342	2561	2432	129	1736	825	1706.4	54	6556	2443.6	6	32958	365.1	17	1706	486	510
chr12	2104	2309	2200	109	1612	697	1627.9	48	11672	2212.8	6	20755	348.9	21	3643	377	392
Total	36061	40249	38356	1893	28618	11631	1614.4	41	16366	2150.6	5	57026	351	15	5373	6747	7031

Gene set (computationally predicted genes)

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	Loci	Transcripts					Exon			Intron			AA			Curated by literature
		All	Protein-coding	Non-coding	Multi-exon	Single-exon	Mean	Min.	Max	Mean	Min.	Max	Mean	Min.	Max	Loci	Transcripts
chr01	903	903	903	0	256	647	533.8	213	3333	866	10	10945	177.7	70	1111	0	0
chr02	706	706	706	0	209	497	511.3	213	3189	838.9	11	14160	170.2	71	1062	0	0
chr03	717	717	717	0	211	506	524.6	213	2997	858.7	11	9627	174.6	70	997	0	0
chr04	715	715	715	0	233	482	570.1	213	3378	878.2	10	14297	189.8	70	1125	0	0
chr05	616	616	616	0	178	438	526.3	213	4506	950.4	11	14628	175.2	71	1502	0	0
chr06	623	623	623	0	192	431	486.1	213	4098	879.4	18	14169	161.8	70	1365	0	0
chr07	632	632	632	0	213	419	515.2	213	2487	941.7	13	13840	171.5	70	828	0	0
chr08	604	604	604	0	186	418	517.2	213	3753	779	23	11195	172.1	70	1247	0	0
chr09	523	523	523	0	148	375	523.5	213	3393	957.9	16	14547	174.3	71	1129	0	0
chr10	462	462	462	0	128	334	552.4	213	3030	899.2	16	10892	183.9	70	1009	0	0
chr11	640	640	640	0	215	425	564.1	213	3477	874.8	14	7841	187.8	71	1157	0	0
chr12	538	538	538	0	178	360	573.1	213	3711	1203.6	16	15541	190.8	71	1237	0	0
Total	7679	7679	7679	0	2347	5332	532.6	213	4506	905.6	10	15541	177.3	70	1502	0	0

Statistics of Os-Nipponbare-Reference-IRGSP-1.0

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	Total bases	Repeat masked bases	Masked (%)	GC content (%)	Number of gaps	N bases
chr01	43,270,923	15,847,288	36.6	43.8	12	8,400
chr02	35,937,250	13,062,923	36.3	43.3	6	5,100
chr03	36,413,819	12,518,488	34.4	43.7	12	9,200
chr04	35,502,694	16,553,790	46.6	44.2	584	17,036
chr05	29,958,434	13,173,263	44.0	43.9	14	5,900
chr06	31,248,787	13,652,019	43.7	43.6	5	21,849
chr07	29,697,621	13,199,116	44.4	43.5	13	3,604
chr08	28,443,022	13,149,309	46.2	43.4	3	3,000
chr09	23,012,720	10,336,761	44.9	43.5	25	8,107
chr10	23,207,287	11,081,696	47.8	43.6	66	15,864
chr11	29,021,106	13,769,678	47.4	42.9	138	12,383
chr12	27,531,856	13,140,309	47.7	43.0	27	6,211
Total	373,245,519	159,484,640	42.7	43.5	905	116,654