3 Japanese cultivars


Koshihikari v1.0

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 119MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 15MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 9.4MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 11MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 18MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 26MB)

Takanari v1.0

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 123MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 16MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 10MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 11MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 18MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 30MB)

Hokuriku 193 v1.0

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 123MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 15MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 7.5MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 11MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 18MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 29MB)

8 cultivated and wild rice varieties


Kinandan Patong v1.0 (SAMN50799085)

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 119MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 5.3MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 9.1MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 11MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 17MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 25MB)

IR64 v1.0 (SAMN50799086)

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 122MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 5.1MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 8.8MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 9.7MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 16MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 24MB)

Kasalath v1.0 (SAMN50799087)

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 121MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 5.1MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 8.8MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 9.6MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 16MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 24MB)

IRGC104814 v1.0 (SAMN50799088)

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 123MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 5.1MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 8.7MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 9.6MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 16MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 24MB)

JP223922 v1.0 (SAMN50799089)

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 114MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 5.1MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 8.7MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 9.5MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 16MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 24MB)

JP226069 v1.0 (SAMN50799090)

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 120MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 5.1MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 8.7MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 9.4MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 16MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 24MB)

IRGC101243 v1.0 (SAMN50799091)

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 109MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 4.9MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 8.4MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 9.2MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 16MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 23MB)

IRGC104086 v1.0 (SAMN50799092)

  • Genome sequence (chr01-12, masked, FASTA)
    [DOWNLOAD] (gz file, 125MB)
  • Gene annotation (GFF)
    [DOWNLOAD] (gz file, 4.6MB)
  • Gene functional annotation (TSV)
    [DOWNLOAD] (gz file, 7.8MB)
  • Protein sequences (FASTA)
    [DOWNLOAD] (gz file, 8.6MB)
  • Nucleotide CDS sequences (FASTA)
    [DOWNLOAD] (gz file, 15MB)
  • Nucleotide transcript sequences (FASTA)
    [DOWNLOAD] (gz file, 21MB)

Others


Kasalath genome assembly (Sakai et al., 2014)

  • Genome sequence (chr01-12, UM, FASTA)
    [DOWNLOAD] (gz file, 199MB)