Comparative genomes for 4 rice cultivars
This page provides comparative genomics data for four rice cultivars. Koshihikari is a Japanese elite cultivar known for its excellent eating quality, whereas Takanari and Hokuriku 193 are high-yielding indica cultivars. Use the tools below to search sequences, explore ortholog candidates, and visualize genome structure and synteny across cultivars.
Supported rice cultivars (genomes and gene annotations)
- Nipponbare (Oryza sativa ssp. japonica cv. Nipponbare; IRGSP-1.0; RAP-DB ver. 20260205)
- Koshihikari (Oryza sativa ssp. japonica cv. Koshihikari; Koshihikari v1.0)
- Takanari (Oryza sativa ssp. indica cv. Takanari; Takanari v1.0)
- Hokuriku 193 (Oryza sativassp. indica cv. Hokuriku 193; Hokuriku 193 v1.0)
BLAST (SequenceServer)
Search homologous sequences across genome assemblies and gene/transcript/protein sequences.
Ortholog candidate (Ortholog table)
Browse ortholog candidates and construct multiple sequence alignments and phylogenetic trees.
Linear genome view
Explore genome sequences and gene annotations in JBrowse2.
Select a genome:
Dotplot & Linear synteny view
Visualize dotplots and syntenic relationships between two genomes in JBrowse2.