Comparative genomes for 8 model plant and crop species
This page provides comparative genomics data across 8 model plants and crop species. Use the tools below to search sequences, explore ortholog candidates, and visualize genome structure and synteny across species.
Supported species and genomes
- Rice (Oryza sativa, IRGSP-1.0, RAP-DB 20260205)
- Wheat (Triticum aestivum, CS IWGSC v2.1, Phytozome)
- Barley (Hordeum vulgare, Morex V3, Phytozome)
- Maize (Zea mays, B73 NAM-5.0.55, Phytozome)
- Arabidopsis (Arabidopsis thaliana, TAIR10, TAIR)
- Soybean (Glycine max, Wm82.a6.v1, Phytozome)
- Quinoa (Chenopodium quinoa, J100, PlantGARDEN)
- Vigna (Vigna marina, V2.A1 VigGS)
BLAST (SequenceServer)
Search homologous sequences across genome assemblies and gene/transcript/protein sequences.
Ortholog candidate (Ortholog table)
Browse ortholog candidates and construct multiple sequence alignments and phylogenetic trees.
Linear genome view
Explore genome sequences and gene annotations in JBrowse2.
Select a genome:
Dotplot & Linear synteny view
Visualize dotplots and syntenic relationships between two genomes in JBrowse2.