ID -10PEHVPSBD
XX
AC S000392
XX
DT 20-Feb-2002 (last modified) uchi
XX
DE "-10 promoter element" found in the barley (H.v.) chloroplast
DE psbD gene promoter; Involved in the expression of the plastid
DE gene psbD which encodes a photosystem II reaction center
DE chlorophyll-binding protein that is activated by blue, white or
DE UV-A light;
XX
KW psbD; chloroplast gene expression; circadian rhythms; light
KW regulation;
XX
OS barley (Hordeum vulgare)
XX
RA Thum KE, Kim M, Morishige DT, Eibl C, Koop HU, Mullet JE
RT Analysis of barley chloroplast psbD light-responsive promoter
RT elements in transplastomic tobacco
RL Plant Mol Biol 47: 353-366 (2001)
RD PubMed: 11587507;
XX
SQ
TATTCT
//
ID -141NTG13
XX
AC S000335
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "-141 sequence"; Binding site of tobacco (N.t.) TGA1a-related
DE protein,PG13, found in the G13 gene promoter; PG13 (Protein
DE encoded by G13) shows high homology to TGA1a; ASF-1, PG13, and
DE TGA1a bind to the same target sequence in the 5' upstream region
DE of G13 suggesting that autoregulation of transcription may
DE involved in the control of G13 expression; TGA1a is
DE preferentially expressed in root tip meristems; TGA1a may
DE contribute to the expression of GST isoenzymes, especially in
DE root tip meristems;
XX
KW TGA1a; G13; ASF1; ASF-1; bZip; xenobiotic stress; root;
KW meristem;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Fromm H, Katagiri F, Chua NH
RT The tobacco transcription activator TGA1a binds to a sequence in
RT the 5' upstream region of a gene encoding a TGA1a-related
RT protein
RL Mol Gen Genet 229: 181-188 (1991)
RD PubMed: 1921969; GenBank: M62855;
XX
RA Klinedinst S, Pascuzzi P, Redman J, Desai M, Arias J
RT A xenobiotic-stress-activated transcription factor and its
RT cognate target genes are preferentially expressed in root tip
RT meristems
RL Plant Mol Biol 42: 679-688 (2000)
RD PubMed: 10809441;
XX
SQ
GCTTTTGATGACTTCAAACAC
//
ID -284MOTIFZMSBE1
XX
AC S000285
XX
DT 10-Feb-2000 (last modified) seki
XX
DE Located between -284 and -255 region of maize (Z.m.) Sbe1 gene
DE promoter; Critical positive cis element; Important for the
DE high-level, sugar-responsive expression of the Sbe1 gene in maize
DE endosperm cells; Recognized by nuclear protein; See S000284;
XX
KW Starch-branching enzyme (Sbe1); starch; kernel; sugar; endosperm;
KW seed;
XX
OS maize (Zea mays)
XX
RA Kim K-N, Guiltinan MJ
RT Identification of cis-acting elements important for expression of
RT the starch-branching enzyme I gene in Maize endosperm
RL Plant Physiol 121: 225-236 (1999)
RD PubMed: 10482678
XX
SQ
CGTGCAAGCCCAAAGGCCAATCGGCCCAGA
//
ID -300CORE
XX
AC S000001
XX
DT 10-May-2006 (last modified) kehi
XX
DE "TGTAAAG core motif" in "-300 elements" of alpha-zein genes of
DE maize; "-300 element core"; "prolamin box" by Vicente-Carbajosa
DE et al. (Proc Natl Acad Sci USA 94:7685 (1997)); P-box; Binds with
DE P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is
DE a DNA-binding protein of the DOF class of transcription factors;
XX
KW zein; core motif; maize; -300 element; promoter; prolamin-box;
KW P-box; seed; endosperm;
XX
OS maize (Zea mays); wheat (Triticum aestivum); barley (Hordeum
OS vulgare); tobacco (Nicotiana tabacum)
XX
RA Forde BG, Heyworth A, Pywell J, Kreis M
RT Nucleotide sequence of a B1 hordein gene and the identification
RT of possible upstream regulatory elements in endosperm storage
RT protein genes from barley, wheat and maize.
RL Nucleic Acids Res 13:7327-7339 (1985)
RD PubMed: 4059057; GenBank: X03103;
XX
RA Colot V, Robert LS, Kavanagh TA, Bevan MW, Thompson RD
RT Localization of sequences in wheat endosperm protein genes which
RT confer tissue-specific expression in tobacco.
RL EMBO J 6:3559-3564 (1987)
RD PubMed: 15467781
XX
RA Thomas MS, Flavell RB
RT Identification of an enhancer element for the endosperm-specific
RT expression of high molecular weight glutenin.
RL Plant Cell 2:1171-1180 (1990)
RD PubMed: 2152160;
XX
RA Thompson GA, Boston RS, Lyznik LA, Hodges TK, Larkins BA
RT Analysis of promoter activity from an alpha-zein gene 5' flanking
RT sequence in transient expression assays.
RL Plant Mol Biol 15:755-764 (1990)
RD PubMed: 2102884;
XX
RA Vicente-Carbajosa J, Moose SP, Parsons RL, Schmidt R
RT A maize zinc-finger protein binds the prolamin box in zein gene
RT promoters and interacts with the basic leucine zipper
RT transcriptional activator Opaque2.
RL Proc Natl Acad Sci USA 94:7685-7690 (1997)
RD PubMed: 9207153; GenBank: U82230;
XX
RA Mena M, Vicente-Carbajosa J, Schmidt RJ, Carbonero P
RT An endosperm-specific DOF protein from barley, highly conserved
RT in wheat, binds to and activates transcription from the
RT prolamin-box of a native B-hordein promoter in barley endosperm
RL Plant J 16:53-62 (1998)
RD PubMed: 9807827; GenBank: AJ012284, AJ000991
XX
RA Singh KB
RT Transcriptional regulation in plants: the importance of
RT combinatorial control.
RL Plant Physiol 118: 1111-1120 (1998)
RC review
RD PubMed: 9847085
XX
SQ
TGTAAAG
//
ID -300ELEMENT
XX
AC S000122
XX
DT 11-May-2006 (last modified) kehi
XX
DE Present upstream of the promoter from the B-hordein gene of
DE barley and the alpha-gliadin, gamma-gliadin, and low molecular
DE weight glutenin genes of wheat; See S000001 -300CORE; See S000002
DE -300MOTIF;
XX
KW -300 element; hordein; gliadin; glutenin; seed;
XX
OS wheat (Triticum aestivum)
XX
RA Kreis M, Williamson MS, Forde J, Schmitz D, Clark J, Buxton B,
RA Pywell J, Marris C, Henderson J, Harris N, Shewry PR, Forde BG,
RA Miflin BJ
RT Differential gene expression in the developing barley endosperm.
RL Philos Trans R Soc Lond B314:355-365 (1986)
XX
RA Colot V, Robert LS, Kavanagh TA, Bevan MW, Thompson RD
RT Localization of sequences in wheat endosperm protein genes which
RT confer tissue-specific expression in tobacco.
RL EMBO J 6:3559-3564 (1987)
RD PubMed: 15467781
XX
RA Thomas MS, Flavell RB
RT Identification of an enhancer element for the endosperm-specific
RT expression of high molecular weight glutenin.
RL Plant Cell 2:1171-1180 (1990)
RD PubMed: 2152160;
XX
SQ
TGHAAARK
//
ID -300MOTIFZMZEIN
XX
AC S000002
XX
DT 17-May-1998 (last modified) kehi
XX
DE Motif in -300 elements of alpha-zein genes of maize (Z.m.);
DE homologous to the sequence to which transacting factors of AP-1,
DE fos, jun or yeast hisS bind;
XX
KW zein; core motif; maize; -300 element; seed; endosperm;
XX
OS maize (Zea mays)
XX
RA Thomas MS, Flavell RB
RT Identification of an enhancer element for the endosperm-specific
RT expression of high molecular weight glutenin.
RL Plant Cell 2:1171-1180 (1990)
RD PubMed: 2152160;
XX
SQ
RTGAGTCAT
//
ID -314MOTIFZMSBE1
XX
AC S000284
XX
DT 10-Feb-2000 (last modified) seki
XX
DE Located between -314 and -295 region of maize (Z.m.) Sbe1 gene
DE promoter; Critical positive cis element; Important for the
DE high-level, sugar-responsive expression of the Sbe1 gene in maize
DE endosperm cells; Recognized by nuclear protein; See S000285;
XX
KW Starch-branching enzyme (Sbe1); kernel; sugar; endosperm; seed;
XX
OS maize (Zea mays)
XX
RA Kim K-N, Guiltinan MJ
RT Identification of cis-acting elements important for expression of
RT the starch-branching enzyme I gene in maize endosperm
RL Plant Physiol 121: 225-236 (1999)
RD PubMed: 10482678
XX
SQ
ACATAAAATAAAAAAAGGCA
//
ID 14BPATERD1
XX
AC S000412
XX
DT 03-Jun-2003 (last modified) kehi
XX
DE "14 bp region" (from -599 to -566) necessary for expression of
DE erd1 (early responsive to dehydration) in dehydrated
DE Arabidopsis;
XX
KW water-stress; erd;
XX
OS Arabidopsis thaliana
XX
RA Simpson SD, Nakashima K, Narusaka Y, Seki M, Shinozaki K,
RA Yamaguchi-Shinozaki K.
RT Two different novel cis-acting elements of erd1, a clpA
RT homologous Arabidopsis gene function in induction by dehydration
RT stress and dark-induced senescence.
RL Plant J. 33: 259-270 (2003)
RD PubMed: 12535340;
XX
SQ
CACTAAATTGTCAC
//
ID 20NTNTNOS
XX
AC S000312
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "20nt (20 nucleotide sequence)" found in the promoter on tobacco
DE (N.t.) nopalin synthase (nos) gene promoter; Containing two
DE hexamer motifs (TGAGCT) and a spacer region; The spacer region
DE between two hexamer motifs is essential; Important for the gene
DE expression; Essential for response to wounding, auxin, MJ, and
DE SA; Very similar to ASF-1 binding site (See S000073); See
DE S000053(ACGTCA);
XX
KW nopalin synthase; nos; auxin; wounding; methyl jasmonate;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Kim Y, Buckley K, Costa MA, An G
RT A 20 nucleotide upstream element is essential for the nopaline
RT synthase (nos) promoter activity
RL Plant Mol Biol 24:105-117 (1994)
RD PubMed: 8111010;
XX
SQ
TGAGCTAAGCACATACGTCA
//
ID 23BPUASNSCYCB1
XX
AC S000283
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "23 bp UAS (Upstream activating sequence)" found in the promoter
DE of Nicotiana sylvestris (N.s.) CycB1 gene; Located between -386
DE and -409; Contains a 5 bp element identical to the MYB binding
DE core (ACGT); Required for M-phase-specific expression; Binds
DE protein complexes in a cell cycle-regulated manner;
XX
KW B-type cyclins; MYB; Cell cycle; M-phase;
XX
OS tobacco (Nicotiana sylvestris)
XX
RA Trehin C, Glab N, Perennes C, Planchais S, Bergounioux C
RT M phase-specific activation of the Nicotiana sylvestris Cyclin B1
RT promoter involves multiple regulatory elements
RL Plant J 17: 263-273 (1999)
XX
SQ
TTTATTTACCAAACGGTAACATC
//
ID 23BPZM27KDAZEIN
XX
AC S000341
XX
DT 7-Sep-2000 (last modified) seki
XX
DE 23 bp sequence found in the maize (Z.m.) gamma-class 27kDa zein
DE gene promoter; Contains -300 element (also called the endosperm
DE box or prolamin box); Binding site of nuclear protein; Confers a
DE high level of transcriptional activity in an
DE orientation-dependent manner; -300 element is involved in the
DE common regulatory mechanisms mediating the coordinated expression
DE of the zein genes;
XX
KW gamma-class 27kDa zein; -300 element; prolamin box; endosperm
KW box; seed;
XX
OS maize (Zea mays)
XX
RA Ueda T, Wang Z, Pham N, Messing J
RT Identification of a transcriptional activator-binding element in
RT the 27-kilodalton zein promoter, the -300 element
RL Mol Cell Biol 14: 4350-4359 (1994)
RD PubMed: 8007944;
XX
SQ
GACGTGTAAAGTAAATTTACAAC
//
ID 27BPDRCONSENSUSPS25S
XX
AC S000286
XX
DT 10-Feb-2000 (last modified) seki
XX
DE The consensus sequence of 27 bp imperfect repeats found in the
DE untrascribed spacer close to the 3'end of the pea (P.s.) 25S
DE gene; Involved in the rDNA replication fork barrier; Nuclear
DE protein(s) specifically bound to this repeat; W=T/A; M=A/C;
XX
KW rDNA; 25S; tandem repeat; fork barrier;
XX
OS pea (Pisum sativum)
XX
RA Lopez-Estrano C, Schivartzman JB, Krimer DB, Hernandez P
RT Characterization of the pea rDNA replication fork barrier:
RT putative cis-acting and trans-acting factors
RL Plant Mol Biol 40: 99-110 (1999)
RD PubMed: 10394949
XX
SQ
TCCGCCWCTTGTATTCGTTGCGTTGMA
//
ID 2SSEEDPROTBANAPA
XX
AC S000143
XX
DT 10-May-1998 (last modified) kehi
XX
DE Conserved in many storage-protein gene promoters; May be
DE important for high activity of the napA promoter;
XX
KW storage protein; ABRE; napA; 2S; seed;
XX
OS Brassica napus;
XX
RA Stalberg K, Ellerstom M, Ezcurra I, Ablov S, Rask L
RT Disruption of an overlapping E-box/ABRE motif abolished high
RT transcription of the napA storage-protein promoter in transgenic
RT Brassica napus seeds.
RL Planta 199:515-519 (1996)
RD PubMed: 8818291;
XX
SQ
CAAACAC
//
ID 3AF1BOXPSRBCS3
XX
AC S000004
XX
DT 17-May-1998 (last modified) kehi
XX
DE "3AF1 binding site"; tetramer in the light-responsive promoter of
DE pea (P.s.) rbcS-3A gene; "Box VI"; One of "AT-rich sequences"
DE which have been found in numerous light-regulated promoters
DE (Terzaghi & Cashmore, 1995); 3AF1 site includes a GATA motif;
XX
KW 3AF1 box; promoter; AT-rich sequences; GATA; rbcs; rbcs-3; leaf;
KW shoot;
XX
OS pea (Pisum sativum)
XX
RA Lam E, Kano-Murakami Y, Gilmartin P, Niner B, Chua N-H
RT A metal-dependent DNA-binding protein interacts with a
RT constitutive element of a light-responsive promoter.
RL Plant Cell 2:857-866 (1990)
RD PubMed: 2152132; GenBank: X62746;
XX
RA Gilmartin PM, Sarokin L, Memelink J, Chua N-H
RT Molecular light switches for plant genes.
RL Plant Cell 2:369-378 (1990)
RD PubMed: 2152164;
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
RC Review
XX
SQ
AAATAGATAAATAAAAACATT
//
ID 5256BOXLELAT5256
XX
AC S000279
XX
DT 27-Feb-2000 (last modified) kehi
XX
DE "52/56 box"; A sequence motif shared between the tomato (L.e.)
DE LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing "PB
DE core motif" (TGTGGTT), and is closely related to the box II
DE sequence motif in the pea rbcS-3A gene promoter; Involved in
DE modulating the activity of the LAT gene promoters in pollen;
DE Dispensable for the developmental regulation of the LAT52 gene in
DE pollen; 52/56 box may be a target for the binding of a member of
DE the GT-1 transcription factor family;
XX
KW 52/56; lat; lat52; lat56; GT-1; pollen; anther;
XX
OS tomato (Lycopersicon esculentum)
XX
RA Twell D, Yamaguchi J, Wing RA, Ushiba J, McCormick S
RT Promoter analysis of genes that are coordinately expressed during
RT pollen development reveals pollen-specific enhancer sequences and
RT shared regulatory elements
RL Genes Dev 5:496-507 (1991)
RD PubMed: 1840556; GenBank: X56487;
XX
RA Eyal Y, Curie C, McCormick S
RT Pollen specificity elements reside in 30 bp of the proximal
RT promoters of two pollen-expressed genes
RL Plant Cell 7:373-384 (1995)
RD PubMed: 7734969;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
TGTGGTTATATA
//
ID 5659BOXLELAT5659
XX
AC S000280
XX
DT 29-Sep-2003 (last modified) kehi
XX
DE "56/59 box"; A sequence motif shared between the tomato (L.e.)
DE LAT(Late Anther Tomato)56 and LAT59 promoters; Found in -103 to
DE -94 in LAT56 and in -114 to -105 in LAT59; Involved in modulating
DE the activity of the LAT gene promoters in pollen; W=A/T;
XX
KW 56/59; lat; lat56; lat59; GT-1; pollen; anther;
XX
OS tomato (Lycopersicon esculentum)
XX
RA Twell D, Yamaguchi J, Wing RA, Ushiba J, McCormick S
RT Promoter analysis of genes that are coordinately expressed during
RT pollen development reveals pollen-specific enhancer sequences and
RT shared regulatory elements
RL Genes Dev 5:496-507 (1991)
RD PubMed: 1840556; GenBank: X56488;
XX
RA Eyal Y, Curie C, McCormick S
RT Pollen specificity elements reside in 30 bp of the proximal
RT promoters of two pollen-expressed genes
RL Plant Cell 7:373-384 (1995)
RD PubMed: 7734969;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
GAAWTTGTGA
//
ID AACACOREOSGLUB1
XX
AC S000353
XX
DT 16-Feb-2001 (last modified) seki
XX
DE Core of AACA motifs found in rice (O.s.) glutelin genes, involved
DE in controlling the endosperm-specific expression; AACA is also
DE closely associated with the GCN4 motif in all rice glutelin genes
DE and together have been shown to confer endosperm-specific
DE enhancement to the truncated -90 CaMV 35S promoter; See also
DE S000045, S000181, S000276;
XX
KW glutelin; AACA; GCN4; seed; endosperm;
XX
OS rice (Oryza sativa)
XX
RA Wu C, Washida H, Onodera Y, Harada K, Takaiwa F
RT Quantitative nature of the Prolamin-box, ACGT and AACA motifs in
RT a rice glutelin gene promoter: minimal cis-element requirements
RT for endosperm-specific gene expression
RL Plant J 23: 415-421 (2000)
RD PubMed: 10929134;
XX
SQ
AACAAAC
//
ID AACAOSGLUB1
XX
AC S000276
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE "AACA motif" found in GluB-1 gene in rice (O.s.); Required for
DE endosperm-specific expression; Highly conserved in the
DE 5'-flanking region of glutelin genes; See S000277;
XX
KW GluB-1; glutelin; endosperm; seed; storage protein; AACA motif;
XX
OS rice (Oryza sativa)
XX
RA Washida H, Wu CY, Suzuki A, Yamanouchi U, Akihama T, Harada K,
RA Takaiwa F
RT Identification of cis-regulatory elements required for endosperm
RT expression of the rice storage protein glutelin gene GluB-1
RL Plant Mol Biol 40:1-12 (1999)
RD PubMed: 10394940;
XX
SQ
CAACAAACTATATC
//
ID AAGACGTAGATACL12
XX
AC S000344
XX
DT 7-Sep-2000 (last modified) seki
XX
DE Sequence found in Arabidopsis (A.t.) acyl carrier protein (ACP),
DE Acl1.2, gene promoter; Contains bZIP core motif (ACGT);
XX
KW Acl1.2; bZIP; acyl carrier protein;
XX
OS Arabidopsis thaliana
XX
RA Baerson SR, Vander Heiden MG, Lamppa GK
RT Identification of domains in an Arabidopsis acyl carrier protein
RT gene promoter required for maximal organ-specific expression
RL Plant Mol Biol 26: 1947-1959 (1994)
RD PubMed: 7858229;
XX
SQ
AAGACGTAG
//
ID ABADESI1
XX
AC S000007
XX
DT 10-Feb-2000 (last modified) seki
XX
DE Responsive to ABA and desiccation; "Motif I" of rice rab16A-D
DE (initially called rab-21); Expressed in seeds late during
DE embryogenesis; Induced by ABA and osmotic stress in vegetative
DE tissues; Contains ACGT motif; transacting factor: TAF-1;
XX
KW rab16; ABA; ABRE; TAF-1; ACGT; Motif i; seed; embryo;
XX
OS rice (Oryza sativa)
XX
RA Mundy J, Yamaguchi-Shinozaki K, Chua N-H
RT Nuclear proteins bind conserved elements in the abscisic
RT acid-responsive promoter of a rice rab gene.
RL Proc Natl Acad Sci USA 87:1406-1410 (1990)
RC Gel retardation; DNase I cleavage inhibition;
RD PubMed: 2137613;
XX
RA Oeda K, Salinas J, Chua N-H
RT A tobacco bZip transcription activator (TAF-1) binds to a
RT G-box-like motif conserved in plant genes.
RL EMBO J 10:1793-1802 (1991)
RD PubMed: 2050116; GenBank: X60363;
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
RA Skriver K, Mundy J
RT Gene expression in response to abscisic acid and osmotic stress
RL Plant Cell 2: 503-512 (1990)
RC review
RD PubMed: 2152172
XX
SQ
RTACGTGGCR
//
ID ABADESI2
XX
AC S000008
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE Synthetic element (hex-3) related to response to ABA and to
DE desiccation; seed expression; Gene: synthetic; hex-3, mutant of
DE hex-1 sequence from wheat histone H3 promoter; transacting
DE factor: bZIP ?;
XX
KW ABA; SEED; bZIP; hex-1; hex-3; histone;
XX
OS rice (Oryza sativa); wheat (Triticum aestivum)
XX
RA Lam E, Chua N-H
RT Tetramer of a 21-base pair synthetic element confers seed
RT expression and transcriptional enhancement in response to water
RT stress and abscisic acid.
RL J Biol Chem 266:17131-17135 (1991)
RD PubMed: 1832669;
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810
XX
SQ
GGACGCGTGGC
//
ID ABAREG2
XX
AC S000009
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE Motif related to ABA regulation; Gene: sunflower helianthinin;
DE transacting factor: bZIP ?
XX
KW ABA; bZIP; seed;
XX
OS sunflower (Helianthus annuus)
XX
RA Nunberg A, Li Z, Bogue M, Vivekananda J, Reddy A, Thomas TL
RL unpublished results (cited in a review by Thomas TL, 1993)
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810
XX
SQ
ATGTACGAAGC
//
ID ABASEED1
XX
AC S000011
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE ABA regulation; seed expression; Gene: carrot Dc3; Transacting
DE factor: bZIP ?; Contains ACGT motif;
XX
KW Dc3; ABA; ABRE; bZIP; seed; ACGT;
XX
OS carrot (Daucus carota)
XX
RA Chung H, Thomas TL
RL unpublished results (cited in a review by Thomas TL, 1993)
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810
XX
SQ
TGTTACGTGCC
//
ID ABFOS
XX
AC S000190
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE ABF (as-1-like box binding factor) binding site; as-1-like (ASL)
DE box is found at -98 to -79 of RTBV (rice tungro bacilliform
DE virus) promoter; ASL box is required for phloem-specific gene
DE expression of Rice Tungro Bacilliform Virus (RTBV); See also
DE RNFG1OS (S000188), and RNFG2OS (S000189); See as-1 (S000023);
XX
KW ASL; as-1; phloem; RTBV; ABF; stem; phloem;
XX
OS RTBV; rice tungro bacilliform virus; rice (Oryza sativa);
XX
RA Yin Y, Chen L, Beachy R
RT Promoter elements required for phloem-specific gene expression
RT from the RTBV promoter in rice
RL Plant J 12:1179-1188 (1997)
RD PubMed: 9418055;
XX
SQ
GCATCTTTACTTTAGCATC
//
ID ABRE2HVA1
XX
AC S000134
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE ABA responsive element, ABRE2, found in barley (H.v.) HVA1 gene
DE encoding a class 3 late embryogenesis-abundant protein; stress
DE response;
XX
KW ABRE; ABA; HVA1; ABRE2; seed; embryo;
XX
OS barley (Hordeum vulgare);
XX
RA Straub PF, Shen Q, Ho THD
RT Structure and promoter analysis of an ABA- and stress-regulated
RT barley gene, HVA1.
RL Plant Mol Biol 26:617-630 (1994)
RD PubMed: 7948917; GenBank: X78205;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
CCTACGTGGCGG
//
ID ABRE2HVA22
XX
AC S000117
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE "ABRE2" of barley HVA22 gene; G-box; component of ABA response
DE complex in HVA22 gene; see S0118 (ABRE3 of HVA22 gene); see CE1
DE (coupling element 1 = TGCCACCGG); See S000014;
XX
KW ABRE; G-box; coupling element; CE1; HVA22;
XX
OS barley (Hordeum vulgare);
XX
RA Shen Q, Ho TH
RT Functional dissection of an abscisic acid(ABA)-inducible gene
RT reveals two independent ABA-responsive complexes each containing
RT a G-box and a novel cis-acting element.
RL Plant Cell 7:295-307 (1995)
RD PubMed: 7734964;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
CGCACGTGTC
//
ID ABRE3HVA1
XX
AC S000135
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE ABA responsive element, ABRE3, found in barley (H.v.) HVA1 gene
DE encoding a class 3 late embryogenesis-abundant protein; stress
DE response;
XX
KW ABRE; ABA; HVA1; ABRE3; seed; embryo;
XX
OS barley (Hordeum vulgare);
XX
RA Straub PF, Shen Q, Ho THD
RT Structure and promoter analysis of an ABA- and stress-regulated
RT barley gene, HVA1.
RL Plant Mol Biol 26:617-630 (1994)
RD PubMed: 7948917; GenBank: X78205;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
GCAACGTGTC
//
ID ABRE3HVA22
XX
AC S000118
XX
DT 17-May-2001 (last modified) uchi
XX
DE "ABRE3" of barley HVA22 gene; Newly designated "A3" by Shen et
DE al., Plant Cell 8:1107 (1996); G-box; component of ABA response
DE complex in HVA22 gene; see S0117 (ABRE2 of HVA22 gene); see CE1
DE (coupling element 1 = TGCCACCGG); See S000014; ABA response
DE complex 1(ABRC1)=A3(previously designated ABRE3)+CE1 (Shen et
DE al., Plant Cell 8:1107(1996));
XX
KW ABRE; G-box; coupling element; CE1; HVA22;
XX
OS barley (Hordeum vulgare);
XX
RA Shen Q, Ho THD
RT Functional dissection of an abscisic acid(ABA)-inducible gene
RT reveals two independent ABA-responsive complexes each containing
RT a G-box and a novel cis-acting element.
RL Plant Cell 7:295-307 (1995)
RD PubMed: 7734964;
XX
RA Shen Q, Zhang P, Ho THD
RT Modular nature of abscisic acid (ABA) response complexes:
RT composite promoter units that are necessary and sufficient for
RT ABA induction of gene expression in barley.
RL Plant Cell 8:1107-1119 (1996)
RD PubMed: 8768371;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
RA Singh KB
RT Transcriptional Regulation in Plants: The Importance of
RT Combinatorial Comtrol
RL Plant Physiol 118: 1111-1120
RC review
XX
SQ
GCCACGTACA
//
ID ABRE3OSRAB16
XX
AC S000120
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE ABA-responsive element of rice (O.s.) rab16 and alpha-amylase
DE genes;
XX
KW ABA; rab16; alpha-amylase; ABRE; seed;
XX
OS rice (Oryza sativa);
XX
RA Skriver K, Olsen FL, Rogers JC, Mundy J
RT Cis-acting DNA elements responsive to gibberellin and its
RT antagonist abscisic acid.
RL Proc Natl Acad Sci USA 88:7266-7270 (1991)
RD PubMed: 1831269;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
GTACGTGGCGC
//
ID ABREA2HVA1
XX
AC S000140
XX
DT 17-May-2001 (last modified) uchi
XX
DE A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of
DE CE3 and A2; ABA responsive element; stress response; Found in
DE barley HVA1 gene encoding a class 3 late embryogenesis-abundant
DE (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3;
DE CE1=S000014; A3=ABRE3=S000118; See S000118;
XX
KW A2; ABRC3; ABRE; ABA; HVA1; Lea; seed;
XX
OS barley (Hordeum vulgare)
XX
RA Shen Q, Zhang P, Ho THD
RT Modular nature of abscisic acid (ABA) response complexes:
RT composite promoter units that are necessary and sufficient for
RT ABA induction of gene expression in barley.
RL Plant Cell 8:1107-1119 (1996)
RD PubMed: 8768371;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
CCTACGTGGC
//
ID ABREATCONSENSUS
XX
AC S000406
XX
DT 06-January-2006 (last modified) kehi
XX
DE ABA-responsive elements (ABREs) found in the promoter of ABA
DE and/or stress-regulated genes; ABFs, a family of ABRE binding
DE factors; ABF3 and ABF4 function in ABA signaling; Y=C/T;
XX
KW ABA; ABF; bZIP factors;
XX
OS Arabidopsis thaliana
XX
RA Choi H, Hong J, Ha J, Kang J, Kim SY
RT ABFs, a family of ABA-responsive element binding factors
RL J Biol Chem. 275: 1723-1730 (2000)
RD PubMed: 10636868;
XX
RA Kang JY, Choi HI, Im MY, Kim SY
RT Arabidopsis basic leucine zipper proteins that mediate
RT stress-responsive abscisic acid signaling
RL Plant Cell. 14: 343-357 (2002)
RD PubMed: 11884679;
XX
RA Oh SJ, Song SI, Kim YS, Jang HJ, Kim SY, Kim M, Kim YK, Nahm BH,
RA Kim JK.
RT Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased
RT tolerance to abiotic stress without stunting growth.
RL Plant Physiology 138: 341-351 (2005)
RD PubMed: 15834008
XX
RA Choi HI, Park HJ, Park JH, Kim S, Im MY, Seo HH, Kim YW, Hwang I,
RA Kim SY.
RT Arabidopsis Calcium-Dependent Protein Kinase AtCPK32 Interacts
RT with ABF4, a Transcriptional Regulator of Abscisic
RT Acid-Responsive Gene Expression, and Modulates Its Activity.
RL Plant Physiol. 139: 1750-1761(2005)
RD PubMed: 16299177
XX
SQ
YACGTGGC
//
ID ABREATRD22
XX
AC S000013
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE "ABRE (ABA responsive element)" in Arabidopsis (A.t.)
DE dehydration-responsive gene rd22; R=A/G; Y=C/T;
XX
KW ABA; responsive element; ABRE; rd22; RD22; dehydration; shoot;
XX
OS Arabidopsis thaliana
XX
RA Iwasaki T, Yamaguchi-Shinozaki K,Shinozaki K
RT Identification of a cis-regulatory region of a gene in
RT Arabidopsis thaliana whose induction by dehydration is mediated
RT by abscisic acid and requires protein synthesis.
RL Mol Gen Genet 247:391-398 (1995)
RD PubMed: 7770045;
XX
RA Bray EA
RT Plant responses to water deficit
RL Trends in Plant Science 2:48-54 (1997)
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
RYACGTGGYR
//
ID ABREAZMRAB28
XX
AC S000218
XX
DT 11-May-2006 (last modified) kehi
XX
DE ABA-responsive element (ABRE A) found at -148 to -139 in maize
DE rab28 (Busk & Pages, 1997); Maize rab28 is ABA-inducible in
DE embryos and vegetative tissues;
XX
KW ABA; ABRE; rab28; seed; shoot;
XX
OS maize (Zea mays)
XX
RA Busk PK, Pages M
RT Protein binding to the abscisic acid-responsive element is
RT independent of VIVIPAROUS1 in vivo
RL Plant Cell 9:2261-2270 (1997)
RD PubMed: 11407411
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
GCCACGTGGG
//
ID ABREBNNAPA
XX
AC S000145
XX
DT 16-Feb-2001 (last modified) seki
XX
DE ABRE of napA storage-protein gene of Brassica napus (B.n.); ABA
DE responsive element; dist B ABRE mediated transactivation by ABI3
DE adn ABI3-dependent response to ABA; a tetramer of the composite
DE RY/G complex mediated only ABA-independent transactivation by
DE ABI3; B2 domain of ABI3 is necessary for ABA-independent and
DE ABA-dependent activation through the dist B ABRE; B3 domain of
DE ABI3 interacts with the RY/G complex;
XX
KW napA; storage protein; ABRE; napin; seed;
XX
OS Brassica napus;
XX
RA Stalberg K, Ellerstom M, Ezcurra I, Ablov S, Rask L
RT Disruption of an overlapping E-box/ABRE motif abolished high
RT transcription of the napA storage-protein promoter in transgenic
RT Brassica napus seeds.
RL Planta 199:515-519 (1996)
RD PubMed: 8818291;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
RA Ezcurra I, Wycliffe P, Nehlin L, Ellerstrom M, Rask L
RT Transactivation of the Brassica napus napin promoter by ABI3
RT requires interaction of the conserved B2 and B3 domains of ABI3
RT with different cis-elements: B2 mediates activation through an
RT ABRE, whereas B3 interacts with an RY/G-box
RL Plant J 24:57-66 (2000)
RD PubMed: 11029704;
XX
SQ
CGCCACGTGTCC
//
ID ABREBZMRAB28
XX
AC S000219
XX
DT 11-May-2006 (last modified) kehi
XX
DE ABA-responsive element (ABRE B) found at -105 to -96 in maize
DE (Z.m.) rab28 (Busk & Pages, 1997); Maize rab28 is ABA-inducible
DE in embryos and vegetative tissues;
XX
KW ABA; ABRE; rab28; embryo; seed; shoot;
XX
OS maize (Zea mays)
XX
RA Busk PK, Pages M
RT Protein binding to the abscisic acid-responsive element is
RT independent of VIVIPAROUS1 in vivo
RL Plant Cell 9:2261-2270 (1997)
RD PubMed: 11407411
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
TCCACGTCTC
//
ID ABRECE1HVA22
XX
AC S000014
XX
DT 03-Jun-2003 (last modified) kehi
XX
DE CE1(coupling element 1) of barley HVA22 gene; possible binding
DE site for nuclear bZIP protein; ABA responsive complex consists of
DE a G-box, namely ABRE3 (GCCACGTACA), and CE1;
XX
KW ABA; CE1; bZIP; G box; G-box; ABRE; shoot;
XX
OS barley (Hordeum vulgare)
XX
RA Shen Q, Ho TH
RT Functional dissection of an abscisic acid(ABA)-inducible gene
RT reveals two independent ABA-responsive complexes each containing
RT a G-box and a novel cis-acting element.
RL Plant Cell 7:295-307 (1995)
RD PubMed: 7734964;
XX
RA Bray EA
RT Plant responses to water deficit
RL Trends in Plant Science 2:48-54 (1997)
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
RA Casaretto J, Ho TH.
RT The transcription factors HvABI5 and HvVP1 are required for the
RT abscisic acid induction of gene expression in barley aleurone
RT cells.
RL Plant Cell 15: 271-284 (2003)
RD PubMed: 12509536;
XX
SQ
TGCCACCGG
//
ID ABRECE3HVA1
XX
AC S000141
XX
DT 03-jun-2003 (last modified) kehi
XX
DE CE3 (coupling element 3) of ABRC3 in barley HVA1 gene; ABRC3 (ABA
DE response complex 3) of HVA1 consists of CE3 and A2; ABA
DE responsive element; stress response; Found in barley HVA1 gene
DE encoding a class 3 late embryogenesis-abundant (Lea) protein;
DE ABRC1 OF HVA22 consists of CE1 and A3; CE1=S000014;
DE A3=ABRE3=S000118; See S000118;
XX
KW CE3; coupling element; ABRC3; ABRE; ABA; HVA1; Lea; seed;
XX
OS barley (Hordeum vulgare);
XX
RA Shen Q, Zhang P, Ho THD
RT Modular nature of abscisic acid (ABA) response complexes:
RT composite promoter units that are necessary and sufficient for
RT ABA induction of gene expression in barley.
RL Plant Cell 8:1107-1119 (1996)
RD PubMed: 8768371;
XX
RA Bray EA
RT Plant responses to water deficit
RL Trends in Plant Science 2:48-54 (1997)
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
RA Casaretto J, Ho TH.
RT The transcription factors HvABI5 and HvVP1 are required for the
RT abscisic acid induction of gene expression in barley aleurone
RT cells.
RL Plant Cell 15: 271-284 (2003)
RD PubMed: 12509536;
XX
SQ
ACGCGTGTCCTC
//
ID ABRECE3ZMRAB28
XX
AC S000221
XX
DT 11-May-2006 (last modified) kehi
XX
DE CE3 (coupling element 3) in maize (Z.m.) rab28 gene promoter; ABA
DE responsive element; stress response; Similar (10 of 12) to CE3 in
DE A1 gene of barley; See S000141 (ABRECE3HVA1); Found at -126 to
DE -115;
XX
KW CE3; coupling element; RAB28; rab; ABRE; ABA; seed;
XX
OS maize (Zea mays)
XX
RA Busk PK, Pages M
RT Protein binding to the abscisic acid-responsive element is
RT independent of VIVIPAROUS1 in vivo
RL Plant Cell 9:2261-2270 (1997)
RD PubMed: 11407411
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
ACGCGCCTCCTC
//
ID ABREDISTBBNNAPA
XX
AC S000262
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "dist B (distal portion of B-box)" found in napA gene of Brassica
DE napus (B.n.); Shows similarity to ABRE; Found between -148 and
DE -124; Required for seed specific expression and ABA
DE responsiveness; See S000263, S000264; dist B ABRE mediated
DE transactivation by ABI3 adn ABI3-dependent response to ABA; a
DE tetramer of the composite RY/G complex mediated only
DE ABA-independent transactivation by ABI3; B2 domain of ABI3 is
DE necessary for ABA-independent and ABA-dependent activation
DE through the dist B ABRE;
XX
KW ABRE; ABA; distB; B-box; seed; napA; napin;
XX
OS Brassica napus
XX
RA Ezcurra I, Ellerstrom M, Wycliffe P, Stalberg K, Rask L
RT Interaction between composite elements in the napA promoter: both
RT the B-box ABA-responsive complex and the RY/G complex are
RT necessary for seed-specific expression
RL Plant Mol Biol 40:699-709 (1999)
RD PubMed: 10480393;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RD PubMed: 9617810;
XX
RA Ezcurra I, Wycliffe P, Nehlin L, Ellerstrom M, Rask L
RT Transactivation of the Brassica napus napin promoter by ABI3
RT requires interaction of the conserved B2 and B3 domains of ABI3
RT with different cis-elements: B2 mediates activation through an
RT ABRE, whereas B3 interacts with an RY/G-box
RL Plant J 24:57-66 (2000)
RD PubMed: 11029704;
XX
SQ
GCCACTTGTC
//
ID ABRELATERD1
XX
AC S000414
XX
DT 01-August-2006 (last modified) kehi
XX
DE ABRE-like sequence (from -199 to -195) required for
DE etiolation-induced expression of erd1 (early responsive to
DE dehydration) in Arabidopsis;
XX
KW ABRE; etiolation; erd;
XX
OS Arabidopsis thaliana
XX
RA Simpson SD, Nakashima K, Narusaka Y, Seki M, Shinozaki K,
RA Yamaguchi-Shinozaki K.
RT Two different novel cis-acting elements of erd1, a clpA
RT homologous Arabidopsis gene function in induction by dehydration
RT stress and dark-induced senescence.
RL Plant J. 33: 259-270 (2003)
RD PubMed: 12535340;
XX
RA Nakashima K, Fujita Y, Katsura K, Maruyama K, Narusaka Y, Seki M,
RA Shinozaki K, Yamaguchi-Shinozaki K.
RT Transcriptional regulation of ABI3- and ABA-responsive genes
RT including RD29B and RD29A in seeds, germinating embryos, and
RT seedlings of Arabidopsis.
RL Plant Mol Biol. 60:51-68 (2006).
RD PubMed: 16463099
XX
SQ
ACGTG
//
ID ABREMOTIFAOSOSEM
XX
AC S000299
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "motif A" ABRE-like sequence found in rice (O.s.) Osem gene
DE promoter; Essential for activation by VP1; Important for
DE regulation by ABA; See S000102, S000300; TRAB1, bZIP
DE transcription factor, interacts with VP1 and mediates abscisic
DE acid-induced transcritption;
XX
KW ABRE; Em; Osem; ABA; VP1; seed;
XX
OS rice (Oryza sativa)
XX
RA Hattori T, Terada t, Hamasuna S
RT Regulation of the Osem gene by abscisic acid and the
RT transcriptional activator VP1: analysis of cis-acting promoter
RT elements required for regulation by abscisic acid and VP1
RL Plant J 7: 913-925 (1995)
RD PubMed: 7599651; GenBank: U22102
XX
RA Hobo T, Kowyama Y, Hattori T
RT A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic
RT acid-induced transcription
RL Proc Natl Acad Sci USA 96: 15348-15353 (1999)
RD PubMed: 10611387;
XX
SQ
TACGTGTC
//
ID ABREMOTIFIIIOSRAB16B
XX
AC S000291
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "Motif III" found in the promoter of rice (O.s.) rab16B gene;
DE Motif I (S000290) and motif III are both required for ABA
DE responsiveness; However, each can substitute for the other;
XX
KW ABA; ABRE; motif III; rab16B;
XX
OS rice (Oryza sativa)
XX
RA Ono A, Izawa T, Chua N-H, Shimamoto K
RT The rab16B promoter of rice contains two distinct abscisic
RT acid-responsive elements
RL Plant Physiol 112: 483-491 (1996)
RD PubMed: 8883374
XX
SQ
GCCGCGTGGC
//
ID ABREMOTIFIOSRAB16B
XX
AC S000290
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "Motif I" found in the promoter of rice (O.s.) rab16B gene; Motif
DE I and motif III (S000291) are both required for ABA
DE responsiveness; However, each can substitute for the other; See
DE S000019, S000120;
XX
KW ABA; ABRE; motif I; rab16B;
XX
OS rice (Oryza sativa)
XX
RA Ono A, Izawa T, Chua N-H, Shimamoto K
RT The rab16B promoter of rice contains two distinct abscisic
RT acid-responsive elements
RL Plant Physiol 112: 483-491 (1996)
RD PubMed: 8883374
XX
SQ
AGTACGTGGC
//
ID ABREOSRAB21
XX
AC S000012
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "ABA responsive element (ABRE)" of wheat Em and rice (O.s.) rab21
DE genes; Proposed consensus sequence for the repeated motif (Em1a
DE and Em1b) of wheat Em gene; S=C/G;
XX
KW ABA; ABRE; Em; rab; Em1a; Em1b; seed;
XX
OS rice (Oryza sativa); wheat (Triticum aestivum)
XX
RA Marcotte WR Jr, Russell SH, Quatrano RS
RT Abscisic acid-responsive sequences from the Em gene of wheat.
RL Plant Cell 1:969-976 (1989)
RD PubMed: 2562556;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC review
RD PubMed: 9617810;
XX
RA Skriver K, Mundy J
RT Gene expression in response to abscisic acid and osmotic stress
RL Plant Cell 2: 503-512 (1990)
RC review
RD PubMed: 2152172
XX
SQ
ACGTSSSC
//
ID ABRERATCAL
XX
AC S000507
XX
DT 04-January-2007 (last modified) kehi
XX
DE "ABRE-related sequence" or "Repeated sequence motifs" identified
DE in the upstream regions of 162 Ca(2+)-responsive upregulated
DE genes; see also ABRE; M=C/A; Y=T/C; B=T/C/G;
XX
KW ABRE; calcium;
XX
OS Arabidopsis thaliana
XX
RA Kaplan B, Davydov O, Knight H, Galon Y, Knight MR, Fluhr R, Fromm
RA H.
RT Rapid Transcriptome Changes Induced by Cytosolic Ca2+ Transients
RT Reveal ABRE-Related Sequences as Ca2+-Responsive cis Elements in
RT Arabidopsis.
RL Plant Cell. 18:2733-2748 (2006)
RD PubMed: 16980540
XX
SQ
MACGYGB
//
ID ABRETAEM
XX
AC S000015
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE "ABRE (ABA responsive element)" found in wheat (T.a.) Em gene;
DE transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC; See S000119
DE EMBP1;
XX
KW ABA; ABRE; EMBP-1; seed;
XX
OS wheat (Triticum aestivum)
XX
RA Guiltinan MJ, Marcotte WR Jr, Quatrano RS
RT A plant leucine zipper protein that recognizes an abscisic acid
RT response element
RL Science 250:267-270 (1990)
RD PubMed: 2145628; GenBank: M62893, M63999;
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810
XX
SQ
GGACACGTGGC
//
ID ABREZMRAB28
XX
AC S000133
XX
DT 23-June-2006 (last modified) kehi
XX
DE ABRE; ABA and water-stress responses; Found in maize (Z.m.)
DE rab28; maize rab28 is ABA-inducible in embryos and vegetative
DE tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase
DE (Adh) gene promoter; "ABRE2"; Found in the maize (Z.m.) Cat1 gene
DE promoter; Responsible for the induction by ABA; Binding site of
DE CBF2; Arabidopsis CBF1 overexpression induces COR genes and
DE enhances freezing tolerance; The CBF genes do not appear to be
DE autoregulated through the CRT/DRE sequence;
XX
KW ABRE; rab28; G-box; Adh; Cat1; ABA; CBF1; DRE; RGA1; COR;
KW freezing tolerance; seed; shoot; CBF2;
XX
OS maize (Zea mays); Arabidopsis thaliana; rice (Oryza sativa);
OS Populus spp.;
XX
RA Suzuki M, Ketterling MG, McCarty DR.
RT Quantitative statistical analysis of cis-regulatory sequences in
RT ABA/VP1- and CBF/DREB1-regulated genes of Arabidopsis.
RL Plant Physiol.139: 437-447 (2005)
RC in silico
RD PubMed: 16113229
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
RA Alonso-Blanco C, Gomez-Mena C, Llorente F, Koornneef M, Salinas
RA J, Martinez-Zapater JM
RT Genetic and Molecular Analyses of Natural Variation Indicate CBF2
RT as a Candidate Gene for Underlying a Freezing Tolerance
RT Quantitative Trait Locus in Arabidopsis
RL Plant Physiology 139: 1304-1312 (2005)
RD PubMed: 16244146
XX
RA Guan LM, Zhao J, Scandalios JG
RT Cis-elements and trans-factors that regulate expression of the
RT maize Cat1 antioxidant gene in response to ABA and osmotic
RT stress: H2O2 is the likely intermediary signaling molecule for
RT the response
RL Plant J 22: 87-95 (2000)
RD PubMed: 10792824;
XX
RA Benedict C, Skinner JS, Meng R, Chang Y, Bhalerao R, Huner NPA,
RA Finn CE, Chen THH, Hurry V
RT The CBF1-dependent low temperature signalling pathway, regulon
RT and increase in freeze tolerance are conserved in Populus spp.
RL Plant, Cell and Environment 29:1259-1272 (2006)
XX
RA Jaglo-Ottosen KR, Gilmour SJ, Zarka DG, Schabenberger O,
RA Thomashow MF
RT Arabidopsis CBF1 overexpression induces COR genes and enhances
RT freezing tolerance
RL Science 1998 3: 104-106 (1998)
RD PubMed: 9525853;
XX
RA Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM,
RA Thomashow MF
RT Low temperature regulation of the Arabidopsis CBF family of AP2
RT transcriptional activators as an early step in cold-induced COR
RT gene expression
RL Plant J 16: 433-442 (1998)
RD PubMed: 9881163;
XX
SQ
CCACGTGG
//
ID ACEATCHS
XX
AC S000355
XX
DT 02-August-2006 (last modified) kehi
XX
DE "ACEAtCHS (ACGT containing element)" found in the LRU
DE (light-responsive unit) in Arabidopsis (A.t.) chalcone synthase
DE (CHS) gene promoter; Required for UV-B and UV-1/blue light
DE responsiveness; See S000356; Transcriptional repression by AtMYB4
DE controls production of UV-protecting sun screens in Arabidopsis;
DE AtMYB4 mutant shows enhanced levels of sinapate ester in leaves
DE and tolerance of UV-B irradiation; AtMYB4 expression is
DE downregulated by exposure to UV-B light;
XX
KW CHS; ACE; MYB; light; UV-A; UV-B; MYB4; leaf; shoot;
XX
OS Arabidopsis thaliana
XX
RA Hartmann U, Valentine WJ, Christie JM, Hays J, Jenkins GI,
RA Weisshaar B
RT Identification of UV/blue light-response elements in the
RT Arabidopsis thaliana chalcone synthase promoter using a
RT homologous protoplast transient expression system
RL Plant Mol Biol (1998) 36: 741-754
RD PubMed: 9526507;
XX
RA Jin H, Cominelli E, Bailey P, Parr A, Mehrtens F, Jones J,
RA Tonelli C, Weisshaar B, Martin C
RT Transcriptional repression by AtMYB4 controls production of
RT UV-protecting sunscreens in Arabidopsis
RL EMBO J 19: 6150-6161 (2000)
RD PubMed: 11080161;
XX
RA Hartmann U, Sagasser M, Mehrtens F, Stracke R, Weisshaar B.
RT Differential combinatorial interactions of cis-acting elements
RT recognized by R2R3-MYB, BZIP, and BHLH factors control
RT light-responsive and tissue-specific activation of
RT phenylpropanoid biosynthesis genes.
RL Plant Mol Biol. 57: 155-171 (2005).
RD PubMed: 15821875
XX
SQ
GACACGTAGA
//
ID ACGTABOX
XX
AC S000130
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "A-box" according to the nomenclature of ACGT elements by Foster
DE et al. (FASEB J 8:192-200 (1994)); One of ACGT elements; Found in
DE ocs gene; RITA-1 binding site (Izawa et al. 1994); "G motif" by
DE Toyofuku et al. (1998); G motif and TATCCAY motif (a GATA motif
DE as its antisense sequence; see S000256) are responsible for
DE sugar repression (Toyofuku et al. 1998); See S000346;
XX
KW A-box; ACGT element; G motif; sugar; repression; seed;
XX
OS plant; rice (Oryza sativa);
XX
RA Foster R, Izawa T, Chua N-H
RT Plant bZIP Proteins gather at ACGT elements.
RL FASEB J 8:192-200 (1994)
RC Review
RD PubMed: 8119490;
XX
RA Izawa T, Foster R, Nakajima M, Shimamoto K, Chua N-H
RT The rice bZIP transcriptional activator RITA-1 is highly
RT expressed during seed development.
RL Plant Cell 6:1277-1287 (1994)
RD PubMed: 7919992; GenBank: L34551;
XX
RA Toyofuku K, Umemura T, Yamaguchi J
RT Promoter elements required for sugar-repression of the RAmy3D
RT gene for alpha-amylase in rice
RL FEBS Lett 428:275-280 (1998)
RD PubMed: 9654148
XX
SQ
TACGTA
//
ID ACGTABREMOTIFA2OSEM
XX
AC S000394
XX
DT 06-January-2006 (last modified) kehi
XX
DE Experimentally determined sequence requirement of ACGT-core of
DE motif A in ABRE of the rice gene, OSEM; See S000281; DRE and ABRE
DE are interdependent in the ABA-responsive expression of the rd29A
DE in Arabidopsis; K=G/T;
XX
KW ABA; ABRE; motif A; DRE;
XX
OS rice (Oryza sativa); Arabidopsis thaliana;
XX
RA Hattori T, Totsuka M, Hobo T, Kagaya Y, Yamamoto-Toyoda A
RT Experimentally Determined Sequence Requirement of ACGT-Containing
RT Abscisic Acid Response Element
RL Plant Cell Physiol 43: 136-140 (2002)
RD PubMed: 11828032;
XX
RA Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe
RA H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K.
RT Interaction between two cis-acting elements, ABRE and DRE, in
RT ABA-dependent expression of Arabidopsis rd29A gene in response to
RT dehydration and high-salinity stresses.
RL Plant J. 34: 137-148 (2003)
RD PubMed: 12694590;
XX
SQ
ACGTGKC
//
ID ACGTABREMOTIFAOSOSEM
XX
AC S000281
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "ABRE motif A" found in the promoter of the rice (O.s.) Osem
DE gene; ACGT-containing ABRE; Required for ABA-responsiveness and
DE VP1 activation; Binding site of TRAB1; Motif A and CE3 (S000282)
DE are functionally equivalent; TRAB1, bZIP transcription factor,
DE interacts with VP1 and mediates abscisic acid-induced
DE transcritption;
XX
KW Motif A; ABRE; CE3; ABA; VP1; TRAB1; Osem; Em; bZIP; seed;
XX
OS rice (Oryza sativa)
XX
RA Hobo T, Asada M, Kowyama Y, Hattori T
RT ACGT-containing abscisic acid response element (ABRE) and
RT coupling element 3 (CE3) are functionally equivalent
RL Plant J 19: 679-689 (1999)
RD PubMed: 10571853;
XX
RA Hobo T, Kowyama Y, Hattori T
RT A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic
RT acid-induced transcription
RL Proc Natl Acad Sci USA 96: 15348-15353 (1999)
RD PubMed: 10611387;
XX
SQ
TACGTGTC
//
ID ACGTATERD1
XX
AC S000415
XX
DT 03-Jun-2003 (last modified) kehi
XX
DE ACGT sequence (from -155 to -152) required for etiolation-induced
DE expression of erd1 (early responsive to dehydration) in
DE Arabidopsis;
XX
KW ACGT; etiolation; erd;
XX
OS Arabidopsis thaliana
XX
RA Simpson SD, Nakashima K, Narusaka Y, Seki M, Shinozaki K,
RA Yamaguchi-Shinozaki K.
RT Two different novel cis-acting elements of erd1, a clpA
RT homologous Arabidopsis gene function in induction by dehydration
RT stress and dark-induced senescence.
RL Plant J. 33: 259-270 (2003)
RD PubMed: 12535340;
XX
SQ
ACGT
//
ID ACGTCBOX
XX
AC S000131
XX
DT 16-Jan-1998 (last modified) kehi
XX
DE "C-box" according to the nomenclature of ACGT elements by Foster
DE et al. (FASEB J 8:192-200 (1994)); One of ACGT elements; Factors
DE groups 1, 2 and 3 have affinity for C-box (Izawa et al. J Mol
DE Biol. 230:1131-1144 (1993)); RITA-1 binding site (Izawa et al.
DE 1994);
XX
KW C-box; ACGT element; seed;
XX
OS plant;
XX
RA Foster R, Izawa T, Chua N-H
RT Plant bZIP Proteins gather at ACGT elements.
RL FASEB J 8:192-200 (1994)
RC Review
RD PubMed: 8119490;
XX
RA Izawa T, Foster R, Nakajima M, Shimamoto K, Chua N-H
RT The rice bZIP transcriptional activator RITA-1 is highly
RT expressed during seed development.
RL Plant Cell 6:1277-1287 (1994)
RD PubMed: 7919992; GenBank: L345501;
XX
RA Izawa T, Foster R, Chua N-H
RT Plant bZIP protein DNA binding specificity.
RL J Mol Biol 230:1131-1144 (1993)
RD PubMed: 8487298;
XX
SQ
GACGTC
//
ID ACGTOSGLUB1
XX
AC S000278
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "ACGT motif" found in GluB-1 gene in rice (O.s.); Required for
DE endosperm-specific expression; Conserved in the 5'-flanking
DE region of glutelin genes; See S000276, S000277; See
DE S000019;Combination of GCN4, AACA and ACGT motifs was found
DE sufficient to confer a detectable level of endosperm expression;
DE See S000353, S000354;
XX
KW GluB-1; glutelin; endosperm; seed; storage protein; ACGT motif;
XX
OS rice (Oryza sativa)
XX
RA Washida H, Wu CY, Suzuki A, Yamanouchi U, Akihama T, Harada K,
RA Takaiwa F
RT Identification of cis-regulatory elements required for endosperm
RT expression of the rice storage protein glutelin gene GluB-1
RL Plant Mol Biol 40:1-12 (1999)
RD PubMed: 10394940;
XX
RA Wu C, Washida H, Onodera Y, Harada K, Takaiwa F
RT Quantitative nature of the Prolamin-box, ACGT and AACA motifs in
RT a rice glutelin gene promoter: minimal cis-element requirements
RT for endosperm-specific gene expression
RL Plant J 23: 415-421 (2000)
RD PubMed: 10929134;
XX
SQ
GTACGTG
//
ID ACGTROOT1
XX
AC S000016
XX
DT 31-Jul-2001 (last modified) uchi
XX
DE "ACGT motif" related to root expression; Gene: synthetic; perfect
DE palindromic sequence (PA) containing G-box-related sequence;
DE transacting factor: TAF-1 ?; Binding of SGBF-1 (a Soybean G-box
DE binding bZIP transcription factor) to ABRE is enhanced by SCOF-1
DE (a zinc finger protein ); Transcription of SCOF-1 is induced by
DE low temperature and ABA;
XX
KW root; ACGT; G box; G-box; ABRE motif; bZIP binding enhancement;
KW cold tolerance; COR; SGBF-1; SCOF-1;
XX
OS tobacco (Nicotiana tabacum); soybean (Glycine max)
XX
RA Salinas J, Oeda K, Chua N-H
RT Two G-box-related sequences confer different expression patterns
RT in transgenic tobacco
RL Plant Cell 4:1485-1493 (1992)
RD PubMed: 1467649;
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Kim JC, Lee SH, Cheong YH, Yoo CM, Lee SI, Chun HJ, Yun DJ, Hong
RA JC, Lee SY, Lim CO, Cho MJ
RT A novel cold-inducible zinc finger protein from soybean, SCOF-1,
RT enhances cold tolerance in transgenic plants
RL Plant J 25: 247-259 (2001)
RD PubMed: 11208017;
XX
SQ
GCCACGTGGC
//
ID ACGTSEED2
XX
AC S000018
XX
DT 17-May-1998 (last modified) kehi
XX
DE "ACGT motif" related to seed expression; Gene: French bean
DE phaseolin; transacting factor: 02;
XX
KW phaseolin; seed; ACGT;
XX
OS French bean; bean (Phaseolus vulgaris)
XX
RA Bustos M
RL personal communication (cited in a review by Thomas TL, 1993)
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
SQ
ACACACGTCAA
//
ID ACGTSEED3
XX
AC S000019
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "ACGT motif" related to seed expression; Gene: synthetic;
DE wild-type motif (Iwt) containing G-box-related sequence;
DE transacting factor: bZIP ?; A tobacco bZip transcription
DE activator (TAF-1) binding site;
XX
KW seed; ACGT; G-box; G box;
XX
OS tobacco
XX
RA Salinas J, Oeda K, Chua N-H
RT Two G-box-related sequences confer different expression patterns
RT in transgenic tobacco.
RL Plant Cell 4:1485-1493 (1992)
RD PubMed: 1467649;
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Oeda K, Salinas J, Chua N-H
RT A tobacco bZip transcription activator (TAF-1) binds to a
RT G-box-like motif conserved in plant genes
RL EMBO J 10: 1792-1802 (1991)
RD PubMed: 2050116
XX
SQ
GTACGTGGCG
//
ID ACGTTBOX
XX
AC S000132
XX
DT 18-Mar-1998 (last modified) kehi
XX
DE "T-box" according to the nomenclature of ACGT elements by Foster
DE et al. (FASEB J 8:192-200 (1994)); One of ACGT elements; See also
DE ACGTABOX (S000130), ACGTCBOX (S000131), and CACGTGMOTIF
DE (S000042);
XX
KW T-box; T box; ACGT element:
XX
OS plant;
XX
RA Foster R, Izawa T, Chua N-H
RT Plant bZIP Proteins gather at ACGT elements.
RL FASEB J 8:192-200 (1994)
RC Review
RD PubMed: 8119490;
XX
SQ
AACGTT
//
ID ACIIIPVPAL2
XX
AC S000194
XX
DT 15-September-2006 (last modified) kehi
XX
DE ACIII element found at -246 to -238 of bean (P.v.) PAL2 promoter;
DE ACIII element is required for vascular-specific gene expression;
DE See also ACIPVPAL2 (S000192) and ACIIPVPAL2 (S000193); Three
DE AC-elements, which are possible Myb protein binding sites,
DE together with a G-box, interact to direct the complex patterns of
DE tissu-specific expression of pAL2 gene; Implicated in the
DE xylem-localized regulation of genes encoding lignin biosynthetic
DE enzymes in loblolly pine (Patzlaff et al., 2003);
XX
KW vascular; PAL; PAL2; ACIII; phloem; xylem; stem; lignin; MYB;
KW R2R3-MYB;
XX
OS bean (Phaseolus vulgaris); Pinus taeda (loblolly pine);
XX
RA Hatton D, Sablowski R, Yung MH, Smith C, Schuch W, Bevan M
RT Tow classes of cis sequences contribute to tissue-specific
RT expression of a PAL2 promoter in transgenic tobacco
RL Plant J 7:859-876 (1995)
RD PubMed: 7599647;
XX
RA Patzlaff A, Newman LJ, Dubos C, Whetten RW, Smith C, McInnis S,
RA Bevan MW, Sederoff RR, Campbell MM
RT Characterisation of Pt MYB1, an R2R3-MYB from pine xylem.
RL Plant Mol Biol. 53:597-608 (2003).
RD PubMed: 15010621
XX
RA Gomez-Maldonado J, Avila C, Torre F, Canas R, Canovas FM,
RA Campbell MM
RT Functional interactions between a glutamine synthetase promoter
RT and MYB proteins.
RL Plant J. 39:513-526 (2004).
RD PubMed: 15272871
XX
SQ
GTTAGGTTC
//
ID ACIIPVPAL2
XX
AC S000193
XX
DT 15-September-2006 (last modified) kehi
XX
DE ACII element found at -131 to -120 of bean (P.v.) PAL2 promoter;
DE ACII element is required for vascular-specific gene expression;
DE See also ACIPVPAL2 (S000192) and ACIIIPVPAL2 (S000194); Three
DE AC-elements, which are possible Myb protein binding sites,
DE together with a G-box, interact to direct the complex patterns of
DE tissu-specific expression of pAL2 gene; Implicated in the
DE xylem-localized regulation of genes encoding lignin biosynthetic
DE enzymes in loblolly pine (Patzlaff et al., 2003);
XX
KW vascular; PAL; ACII; phloem; xylem; stem; lignin; MYB; R2R3-MYB;
XX
OS bean (Phaseolus vulgaris); Pinus taeda (loblolly pine);
XX
RA Hatton D, Sablowski R, Yung MH, Smith C, Schuch W, Bevan M
RT Tow classes of cis sequences contribute to tissue-specific
RT expression of a PAL2 promoter in transgenic tobacco
RL Plant J 7:859-876 (1995)
RD PubMed: 7599647;
XX
RA Patzlaff A, Newman LJ, Dubos C, Whetten RW, Smith C, McInnis S,
RA Bevan MW, Sederoff RR, Campbell MM
RT Characterisation of Pt MYB1, an R2R3-MYB from pine xylem.
RL Plant Mol Biol. 53:597-608 (2003).
RD PubMed: 15010621
XX
RA Gomez-Maldonado J, Avila C, Torre F, Canas R, Canovas FM,
RA Campbell MM
RT Functional interactions between a glutamine synthetase promoter
RT and MYB proteins.
RL Plant J. 39:513-526 (2004).
RD PubMed: 15272871
XX
SQ
CCACCAACCCCC
//
ID ACIPVPAL2
XX
AC S000192
XX
DT 15-September-2006 (last modified) kehi
XX
DE ACI element found at -83 to -74 of bean (P.v.) PAL2 promoter;
DE AC-rich element; ACI element is required for vascular-specific
DE gene expression; See also ACIIPVPAL2 (S000193) and ACIIIPVPAL2
DE (S000194); Three AC-elements, which are possible Myb protein
DE binding sites, together with a G-box, interact to direct the
DE complex patterns of tissue-specific expression of pAL2 gene;
DE Implicated in the xylem-localized regulation of genes encoding
DE lignin biosynthetic enzymes in loblolly pine (Patzlaff et al.,
DE 2003);
XX
KW vascular; PAL; ACI; phloem; xylem; stem; lignin; MYB; R2R3-MYB;
XX
OS Phaseolus vulgaris(bean); Pinus taeda (loblolly pine);
XX
RA Hatton D, Sablowski R, Yung MH, Smith C, Schuch W, Bevan M
RT Tow classes of cis sequences contribute to tissue-specific
RT expression of a PAL2 promoter in transgenic tobacco
RL Plant J 7:859-876 (1995)
RD PubMed: 7599647;
XX
RA Patzlaff A, Newman LJ, Dubos C, Whetten RW, Smith C, McInnis S,
RA Bevan MW, Sederoff RR, Campbell MM
RT Characterisation of Pt MYB1, an R2R3-MYB from pine xylem.
RL Plant Mol Biol. 53:597-608 (2003).
RD PubMed: 15010621
XX
RA Gomez-Maldonado J, Avila C, Torre F, Canas R, Canovas FM,
RA Campbell MM
RT Functional interactions between a glutamine synthetase promoter
RT and MYB proteins.
RL Plant J. 39:513-526 (2004).
RD PubMed: 15272871
XX
SQ
CCCACCTACC
//
ID AGAMOUSATCONSENSUS
XX
AC S000342
XX
DT 16-May-2001 (last modified) uchi
XX
DE Binding consensus sequence of Arabidopsis (A.t.) AGAMOUS MADS
DE domain; MCM1 binding-sites in a-mating-type-specific promoters of
DE Saccharomyces cerevisiae show similarities with the binding-site
DE sequence of the AGAMOUS MADS domain; See S000316; MADS domain and
DE I region of AGAMOUS are sufficient and necessary for DNA binding;
DE Both the K domain and C region are indispensable for AG function
DE in flower development; See S000338;
XX
KW AGAMOUS; MADS domain; flower;
XX
OS Arabidopsis thaliana
XX
RA Shiraishi H, Okada K, Shimura Y
RT Nucleotide sequences recognized by the AGAMOUS MADS domain of
RT Arabidopsis thaliana in vitro
RL Plant J 4: 385-398 (1993)
RD PubMed: 8106084;
XX
RA Mizukami Y, Huang H, Tudor M, Hu Y, Ma H
RT Functional domains of the floral regulator AGAMOUS:
RT characterization of the DNA binding domain and analysis of
RT dominant negative mutations
RL Plant Cell 8:831-845 (1996)
RD PubMed: 8672883;
XX
SQ
TTDCCWWWWWWGGHAA
//
ID AGATCONSENSUS
XX
AC S000316
XX
DT 16-May-2001 (last modified) uchi
XX
DE Binding consensus sequence for the product of the Arabidopsis
DE (A.t.) floral homeotic gene AGAMOUS (AG); AG protein contains a
DE region similar to the DNA binding domain of SRF and MCM1; The
DE consensus sequence contains a CArG box; AG protein is a putative
DE transcription factor for floral genes; H=A/T/C; W=A/T; See
DE S000342; MADS domain and I region of AGAMOUS are sufficient and
DE necessary for DNA binding; Both the K domain and C region are
DE indispensable for AG function in flower development; See
DE S000338;
XX
KW floral homeotic gene; AGAMOUS; AG; MCM1; SRF; GArG box; APETALA2;
KW flower;
XX
OS Arabidopsis (Arabidopsis thaliana)
XX
RA Huang H, Mizukami Y, Hu Y, Ma H
RT Isolation and characterization of the binding sequences for the
RT product of the Arabidopsis floral homeotic gene AGAMOUS
RL Nucleic Acids Res. 21: 4769-4776 (1993)
RD PubMed: 7901838;
XX
RA Mizukami Y, Huang H, Tudor M, Hu Y, Ma H
RT Functional domains of the floral regulator AGAMOUS:
RT characterization of the DNA binding domain and analysis of
RT dominant negative mutations
RL Plant Cell 8:831-845 (1996)
RD PubMed: 8672883;
XX
RA Drews GN, Bowman JL, Meyerowitz EM
RT Negative regulation of the Arabidopsis homeotic gene AGAMOUS by
RT the APETALA2 product
RL Cell 65 :991-1002 (1991)
RD PubMed: 1675158;
XX
SQ
TTWCCWWWWNNGGWW
//
ID AGCBOXNPGLB
XX
AC S000232
XX
DT 02-August-2006 (last modified) kehi
XX
DE "AGC box" repeated twice in a 61 bp enhancer element in tobacco
DE (N.p.) class I beta-1,3-glucanase (GLB) gene; See S000036,
DE S000089; "GCC-box"; Binding sequence of Arabidopsis AtERFs;
DE AtERF1,2 and 5 functioned as activators of GCC box-dependent
DE transcription; AtERF3 and 4 acted as repressors; AtERF proteins
DE are stress signal-response factors; EREBP2 binding site;
DE Conserved in most PR-protein genes; Rice MAPK (BWMK1)
DE phosphorylates OS EREBP1, which enhance DNA-binding activity of
DE the factor to the GCC box;
XX
KW AGC box; GLB; ERE; ERFs; Ethylene; GCC-box; Neutral PR-5;
KW osmotin-like protein; EREBP2; MAPK; BWMK1; PR box;
XX
OS tobacco (Nicotiana plumbaginifolia); Arabidopsis (Arabidopsis
OS thaliana); tobacco (Nicotiana sylvestris); Oryza sativa; rice;
XX
RA Hart CM, Nagy F, Meins Jr F
RT A 61 bp enhancer element of the tobacco beta-1,3-glucanase B gene
RT interacts with one or more regulated nuclear proteins
RL Plant Mol Biol 21:121-131 (1993)
RD PubMed: 8425042;
XX
RA Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M
RT Arabidopsis ethylene-responsive element binding factors act as
RT transcriptional activators or repressors of GCC box-mediated gene
RT expression
RL Plant Cell 12:393-404 (2000)
RD PubMed: 10715325;
XX
RA Sato F, Kitajima S, Koyama T, Yamada Y
RT Ethylene-induced gene expression of osmotin-like protein, a
RT neutral isoform of tobacco PR-5, is mediated by the AGCCGCC
RT cis-sequence
RL Plant Cell Physiol 37: 249-255 (1996)
RD PubMed: 8673338;
XX
RA Ohme-Takagi M, Suzuki K, Shinshi H
RT Regulation of Ethylene-Induced Transcription of Defense Genes
RL Plant Cell Physiol 41: 1187-1192 (2000)
RD PubMed: 11092902;
XX
RA Rushton PJ, Reinstadler A, Lipka V, Lippok B, Somssich IE
RT Synthetic plant promoters containing defined regulatory elements
RT provide novel insights into pathogen- and wound-induced
RT signaling
RL Plant Cell 14: 749-762 (2002)
RD PubMed: 11971132;
XX
RA Cheong YH, Moon BC, Kim JK, Kim CY, Kim MC, Kim IH, Park CY, Kim
RA JC, Park BO, Koo SC, Yoon HW, Chung WS, Lim CO, Lee SY, Cho MJ
RT BWMK1, a rice mitogen-activated protein kinase, locates in the
RT nucleus and mediates pathogenesis-related gene expression by
RT activation of a transcription factor.
RL Palnt Physiol. 132: 1961-1972 (2003)
RD PubMed: 12913152;
XX
RA Zhang H, Huang Z, Xie B, Chen Q, Tian X, Zhang X, Zhang H, Lu X,
RA Huang D, Huang R.
RT The ethylene-, jasmonate-, abscisic acid- and NaCl-responsive
RT tomato transcription factor JERF1 modulates expression of GCC
RT box-containing genes and salt tolerance in tobacco.
RL Planta. 220: 262-270 (2004)
RD PubMed: 15300440
XX
SQ
AGCCGCC
//
ID AGL1ATCONSENSUS
XX
AC S000338
XX
DT 16-May-2001 (last modified) uchi
XX
DE Binding consensus sequence of Arabidopsis (A.t.) AGL1
DE (AGAMOUS-like 1); AGL1 contains MADS domain; See S000339; AGL20
DE is a MADS domain gene from Arabidopsis that is activated in shoot
DE apical meristem during the transition to flowering; AGL20 is also
DE regulated by the Gibberellin pathway; Complex regulatory net
DE works involving several MADS-genes underlie development of
DE vegetative structures;
XX
KW MADS; AGL1; AGAMOUS; AGL20; floral induction; photoperiod;
KW endosperm; gurd cells; root; trichome; leaf; shoot; flower;
XX
OS Arabidopsis thaliana
XX
RA Huang H, Tudor M, Su T, Zhang Y, Hu Y, Ma H
RT DNA binding properties of two Arabidopsis MADS domain proteins:
RT binding consensus and dimer formation
RL Plant Cell 8: 81-94 (1996)
RD PubMed: 8597661;
XX
RA Borner R, Kampmann G, Chandler J, Gleissner R, Wisman E, Apel K,
RA Melzer S
RT A MADS domain gene involved in the transition to flowering in
RT Arabidopsis
RL Plant J 24: 591-599 (2000)
RD PubMed: 11123798;
XX
RA Alvarez-Buylla ER, Liljegren SJ, Pelaz S, Gold SE, Burgeff C,
RA Ditta GS, Vergara-Silva F, Yanofsky MF
RT MADS-box gene evolution beyond flowers: expression in pollen,
RT endosperm, guard cells, roots and trichomes
RL Plant J 24: 457-466 (2000)
RD PubMed: 11115127
XX
SQ
NTTDCCWWWWNNGGWAAN
//
ID AGL2ATCONSENSUS
XX
AC S000339
XX
DT 16-May-2001 (last modified) uchi
XX
DE Binding consensus sequence of Arabidopsis (A.t.) AGL2
DE (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a
DE dimer; See S000338;
XX
KW MADS; AGL1; AGAMOUS; flower;
XX
OS Arabidopsis thaliana
XX
RA Huang H, Tudor M, Su T, Zhang Y, Hu Y, Ma H
RT DNA binding properties of two Arabidopsis MADS domain proteins:
RT binding consensus and dimer formation
RL Plant Cell 8: 81-94 (1996)
RD PubMed: 8597661;
XX
SQ
NNWNCCAWWWWTRGWWAN
//
ID AGL3ATCONSENSUS
XX
AC S000343
XX
DT 7-Sep-2000 (last modified) seki
XX
DE Binding consensus sequence of Arabidopsis(A.t.) AGL3; AGL3 is
DE MADS-box domain protein; AGL3 is expressed in all above-ground
DE vegetative organs; AGL3 may be involved the transcriptional
DE regulation of genes;
XX
KW MADS-box; AGL3; CArG; stem; leaf; flower; shoot;
XX
OS Arabidopsis thaliana
XX
RA Huang H, Tudor M, Weiss CA, Hu Y, Ma H
RT The Arabidopsis MADS-box gene AGL3 is widely expressed and
RT encodes a sequence-specific DNA-binding protein
RL Plant Mol Biol 28:549-567 (1995)
RD PubMed: 7632923; GenBank: U81368; U81369; U81370;
XX
SQ
TTWCYAWWWWTRGWAA
//
ID AGMOTIFNTMYB2
XX
AC S000444
XX
DT 28-Jan-2004 (last modified) kehi
XX
DE AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is
DE a regulator of the tobacco retrotransposon Tto1 and the
DE defence-related gene phenylalanine ammonia lyase (PAL), which are
DE induced by various stress such as wounding or elicitor treatment;
DE AGP1 (GATA-type zinc finger protein) binding site;
XX
KW MYB; Tto1; PAL; AGP1; GATA;
XX
OS Nicotiana tabacum (tobacco)
XX
RA Sugimoto K, Takeda S, Hirochika H
RT Transcriptional activation mediated by binding of a plant
RT GATA-type zinc finger proteinAGP1 to the AG-motif (AGATCCAA) of
RT the wound-inducible Myb gene NtMyb2.
RL Plant J, 36: 550-564 (2003)
RD PubMed: 14617085;
XX
SQ
AGATCCAA
//
ID AGTACSAO
XX
AC S000258
XX
DT 14-Oct-1999 (last modified) kehi
XX
DE "AGTA repeat" in pumpkin (C.s.) ascorbate oxidase gene (AO)
DE promoter; Found in silencer region; AOBP (AGTA repeat binding
DE protein) binding site; AOBP protein has DOF domain; Required for
DE repression of expression of AO gene;
XX
KW AGTA repeat; DOF; AOBP; ascorbate oxidase; silencer region;
XX
OS pumpkin (Cucurbita sp.)
XX
RA Kisu Y, Ono T, Shimofurutani N, Suzuki M, Esaka M
RT Characterization and expression of a new class of zinc finger
RT protein that binds to silencer region of ascorbate oxidase gene
RL Plant Cell Physiol 39:1054-1064 (1998)
RD PubMed: 9871365; GenBank: D45066;
XX
SQ
AAAAAGTAAAAAGTAAAAAAGTAAAAAG
//
ID ALF1NTPARC
XX
AC S000238
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE "ALF-1 (as-1-like sequence binding factor)" binding site found in
DE tobacco (N.t.) parC gene; Found in auxin-responsive regions;
DE as-1-like sequences in parA, parB and parC bind with ASF-1,
DE ALF-2, and ALF-1, respectively; See S000190 (ABFOS);
XX
KW as-1; ALF-1; par; auxin;
XX
OS tobacco (Nicotiana tabacum);
XX
RA Sakai T, Takahashi Y, Nagata T
RT The identification of DNA binding factor specific for as-1-like
RT sequences in auxin-responsive regions of parA, parB and parC
RL Plant Cell Physiol 39:731-739 (1998)
RD PubMed: 9729895;
XX
SQ
TTACGCAAGCAATGACA
//
ID ALF2NTPARB
XX
AC S000239
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE "ALF-2 (as-1-like sequence binding factor 2)" binding site found
DE in tobacco (N.t.) parB gene; Found in auxin-responsive regions;
DE as-1-like sequences in parA, parB and parC bind with ASF-1,
DE ALF-2, and ALF-1, respectively; See S000190 (ABFOS);
XX
KW as-1; ALF-2; par; auxin;
XX
OS tobacco (Nicotiana tabacum);
XX
RA Sakai T, Takahashi Y, Nagata T
RT The identification of DNA binding factor specific for as-1-like
RT sequences in auxin-responsive regions of parA, parB and parC
RL Plant Cell Physiol 39:731-739 (1998)
RD PubMed: 9729895;
XX
SQ
TGAGGAGACTTGTGAGGT
//
ID AMMORESIIUDCRNIA1
XX
AC S000374
XX
DT 31-Jul-2001 (last modified) uchi
XX
DE Motifs (IIU and IID) found in the Chlamydomonas (C.R.) Nia1 gene
DE promoter; Involved in ammonium-response; Located between -231 and
DE -219 and also between -76 and -65; Involved in Nia1 transcription
DE activation; W=T/A;
XX
KW nitrate reductase; ammonium response;
XX
OS Chlamydomonas reinhardtii
XX
RA Loppes R, Radoux M
RT Identification of short promoter regions involved in the
RT transcriptional expression of the nitrate reductase gene in
RT Chlamydomonas reinhardtii
RL Plant Mol Biol 45: 215-227 (2001)
RD PubMed: 11289512;
XX
SQ
GGWAGGGT
//
ID AMMORESIVDCRNIA1
XX
AC S000375
XX
DT 31-Jul-2001 (last modified) uchi
XX
DE Motif (IVD) found in the Chlamydomonas (C.R.) Nia1 gene promoter;
DE Located between -51 and -42; Involved in Nia1 transcription
DE repression;
XX
KW nitrate reductase; ammonium response;
XX
OS Chlamydomonas reinhardtii
XX
RA Loppes R, Radoux M
RT Identification of short promoter regions involved in the
RT transcriptional expression of the nitrate reductase gene in
RT Chlamydomonas reinhardtii
RL Plant Mol Biol 45: 215-227 (2001)
RD PubMed: 11289512;
XX
SQ
CGAACTT
//
ID AMMORESVDCRNIA1
XX
AC S000376
XX
DT 31-Jul-2001 (last modified) uchi
XX
DE Motif (VD) found in the Chlamydomonas (C.R.) Nia1 gene promoter;
DE Located between -33 and -8; Involved in Nia1 transcription
DE activation;
XX
KW nitrate reductase; ammonium response;
XX
OS Chlamydomonas reinhardtii
XX
RA Loppes R, Radoux M
RT Identification of short promoter regions involved in the
RT transcriptional expression of the nitrate reductase gene in
RT Chlamydomonas reinhardtii
RL Plant Mol Biol 45: 215-227 (2001)
RD PubMed: 11289512;
XX
SQ
GGCCCCGGG
//
ID AMYBOX1
XX
AC S000020
XX
DT 17-May-1998 (last modified) kehi
XX
DE "amylase box"; Conserved sequence found in 5'-upstream region of
DE alpha-amylase gene of rice, wheat, barley;
XX
KW amylase; seed;
XX
OS barley (Hordeum vulgare); rice (Oryza sativa); wheat (Triticum
OS aestivum)
XX
RA Huang N, Sutliff TD, Litts JC, Rodriguez RL
RT Classification and characterization of the rice alpha-amylase
RT multigene family.
RL Plant Mol Biol 14:655-668 (1990)
RD PubMed: 2102847; GenBank: X16509;
XX
SQ
TAACARA
//
ID AMYBOX2
XX
AC S000021
XX
DT 17-May-1998 (last modified) kehi
XX
DE "amylase box"; "amylase element"; Conserved sequence found in
DE 5'upstream region of alpha-amylase gene of rice, wheat, barley;
DE "amylase box" (Huang et al. 1990); "amylase element" (Hwang et
DE al., 1998);
XX
KW amylase; seed;
XX
OS barley (Hordeum vulgare); rice (Oryza sativa); wheat (Triticum
OS aestivum)
XX
RA Huang N, Sutliff TD, Litts JC, Rodriguez RL
RT Classification and characterization of the rice alpha-amylase
RT multigene family.
RL Plant Mol Biol 14:655-668 (1990)
RD PubMed: 2102847; GenBank: X16509;
XX
RA Hwang YS, Karrer EE, Thomas BR, Chen L, Rodriguez RL
RT Three cis-elements required for rice alpha-amylase Amy3D
RT expression during sugar starvation
RL Plant Mol Biol 36:331-341 (1998)
RD PubMed: 9484474;
XX
SQ
TATCCAT
//
ID ANAERO1CONSENSUS
XX
AC S000477
XX
DT 05-November-2005 (last modified) kehi
XX
DE One of 16 motifs found in silico in promoters of 13 anaerobic
DE genes involved in the fermentative pathway (anaerobic set
DE 1)(Mohanty et al., 2005); Arbitrary named ANAERO1CONSENSUS by the
DE PLACEdb curator; See also S000478, S000479, S000480, S000481;
XX
KW anaerobic;
XX
OS Zea mays (maize); Arabidopsis thaliana; Pisum sativum (pea);
OS Hordeum vulgare (barley); Oryza sativa (rice); Petunia hybrida
OS (petunia); Lycopersicon esculentum (tomato);
XX
RA Mohanty B, Krishnan SP, Swarup S, Bajic VB.
RT Detection and preliminary analysis of motifs in promoters of
RT anaerobically induced genes of different plant species.
RL Ann Bot (Lond).96: 669-681 (2005)
RC in silico
RD PubMed: 16027132
XX
SQ
AAACAAA
//
ID ANAERO2CONSENSUS
XX
AC S000478
XX
DT 05-November-2005 (last modified) kehi
XX
DE One of 16 motifs found in silico in promoters of 13 anaerobic
DE genes involved in the fermentative pathway (anaerobic set
DE 1)(Mohanty et al., 2005); Arbitrary named ANAERO2CONSENSUS by the
DE PLACEdb curator; See also S000477, S000479, S000480, S000481;
XX
KW anaerobic;
XX
OS Zea mays (maize); Arabidopsis thaliana; Pisum sativum (pea);
OS Hordeum vulgare (barley); Oryza sativa (rice); Petunia hybrida
OS (petunia); Lycopersicon esculentum (tomato);
XX
RA Mohanty B, Krishnan SP, Swarup S, Bajic VB.
RT Detection and preliminary analysis of motifs in promoters of
RT anaerobically induced genes of different plant species.
RL Ann Bot (Lond).96: 669-681 (2005)
RC in silico
RD PubMed: 16027132
XX
SQ
AGCAGC
//
ID ANAERO3CONSENSUS
XX
AC S000479
XX
DT 05-November-2005 (last modified) kehi
XX
DE One of 16 motifs found in silico in promoters of 13 anaerobic
DE genes involved in the fermentative pathway (anaerobic set
DE 1)(Mohanty et al., 2005); Arbitrary named ANAERO3CONSENSUS by the
DE PLACEdb curator; See also S000477, S000478, S000480, S000481;
XX
KW anaerobic;
XX
OS Zea mays (maize); Arabidopsis thaliana; Pisum sativum (pea);
OS Hordeum vulgare (barley); Oryza sativa (rice); Petunia hybrida
OS (petunia); Lycopersicon esculentum (tomato);
XX
RA Mohanty B, Krishnan SP, Swarup S, Bajic VB.
RT Detection and preliminary analysis of motifs in promoters of
RT anaerobically induced genes of different plant species.
RL Ann Bot (Lond).96: 669-681 (2005)
RC in silico
RD PubMed: 16027132
XX
SQ
TCATCAC
//
ID ANAERO4CONSENSUS
XX
AC S000480
XX
DT 05-November-2005 (last modified) kehi
XX
DE One of 16 motifs found in silico in promoters of 13 anaerobic
DE genes involved in the fermentative pathway (anaerobic set
DE 1)(Mohanty et al., 2005); Arbitrary named ANAERO4CONSENSUS by the
DE PLACEdb curator; See also S000477, S000478, S000479, S000481;
DE H=A/T/C;
XX
KW anaerobic;
XX
OS Zea mays (maize); Arabidopsis thaliana; Pisum sativum (pea);
OS Hordeum vulgare (barley); Oryza sativa (rice); Petunia hybrida
OS (petunia); Lycopersicon esculentum (tomato);
XX
RA Mohanty B, Krishnan SP, Swarup S, Bajic VB.
RT Detection and preliminary analysis of motifs in promoters of
RT anaerobically induced genes of different plant species.
RL Ann Bot (Lond).96: 669-681 (2005)
RC in silico
RD PubMed: 16027132
XX
SQ
GTTTHGCAA
//
ID ANAERO5CONSENSUS
XX
AC S000481
XX
DT 05-November-2005 (last modified) kehi
XX
DE One of 16 motifs found in silico in promoters of 13 anaerobic
DE genes involved in the fermentative pathway (anaerobic set
DE 1)(Mohanty et al., 2005); Arbitrary named ANAERO5CONSENSUS by the
DE PLACEdb curator; See also S000477, S000478, S000479, S000480;
XX
KW anaerobic;
XX
OS Zea mays (maize); Arabidopsis thaliana; Pisum sativum (pea);
OS Hordeum vulgare (barley); Oryza sativa (rice); Petunia hybrida
OS (petunia); Lycopersicon esculentum (tomato);
XX
RA Mohanty B, Krishnan SP, Swarup S, Bajic VB.
RT Detection and preliminary analysis of motifs in promoters of
RT anaerobically induced genes of different plant species.
RL Ann Bot (Lond).96: 669-681 (2005)
RC in silico
RD PubMed: 16027132
XX
SQ
TTCCCTGTT
//
ID ANAEROBICCISZMGAPC4
XX
AC S000350
XX
DT 16-Feb-2001 (last modified) seki
XX
DE 20 bp anaerobic cis-regulatory sequence found in the maize (Z.m.)
DE GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter;
DE Located between -286 and -266; Required for anaerobic gene
DE expression in transgenic tobacco; See S000351;
XX
KW anaerobic; GapC4; Glyceraldehyde-3-phosphate dehydrogenase;
XX
OS maize (Zea mays)
XX
RA Geffers R, Cerff R, Hehl R
RT Anaerobiosis-specific interaction of tobacco nuclear factors with
RT cis-regulatory sequences in the maize GapC4 promoter
RL Plant Mol Biol 43: 11-21 (2000)
RD PubMed: 10949370;
XX
SQ
CGAAACCAGCAACGGTCCAG
//
ID ARE1
XX
AC S000022
XX
DT 16-Jan-1998 (last modified) kehi
XX
DE "ARE (antioxidant response element)"; antioxidant response
DE element of rat glutathione S-transferase Ya subunit, and rat
DE NAD(P)H:quinone reductase genes;
XX
KW antioxidant response element; ARE; oxidative stress; active
KW oxygen;
XX
OS rat
XX
RA Rushmore TH, Morton MR, Pickett CB
RT The antioxidant responsive element. Activation by oxidative
RT stress and identification of the DNA consensus sequence required
RT for functional activity.
RL J Biol Chem 266:11632-11639 (1991)
RD PubMed: 1646813;
XX
SQ
RGTGACNNNGC
//
ID ARECOREZMGAPC4
XX
AC S000393
XX
DT 21-May-2002 (last modified) uchi
XX
DE Putative binding site for a Myb found in the promoter of maize
DE glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4)
DE gene; Essential for anaerobic induction;
XX
KW anaerobic; GapC4; Myb protein;
XX
OS maize (Zea mays)
XX
RA Geffers R, Sell S, Cerff R, Hehl R
RT The TATA box and a Myb binding site are essential for anaerobic
RT expression of a maize GapC4 minimal promoter in tobacco
RL Biochim Biophys Acta 1521: 120-125 (2001)
RD PubMed: 11690643;
XX
SQ
AGCAACGGTC
//
ID ARELIKEGHPGDFR2
XX
AC S000437
XX
DT 28-November-2004 (last modified) kehi
XX
DE Sequence highly similar to ARE (anthocyanin regulatory element)
DE found in maize anthocyanin promoter (Tuerck and Fromm 1994;
DE Lesnick and Chandler 1998); Binding site of R2R3-type MYB factor,
DE GMYB 10 of G. hybrida;
XX
KW anthocyanina; ARE; DRF; C1; R2R3; MYB; a2;
XX
OS Gerbera hybrida (Astraceae); Zea mays (maize)
XX
RA Elomaa P, Uimari A, Mehto M, Albert VA, Latinen RAE, Teeri TH.
RT Activation of anthocyanin biosynthesis in Gerbera hybrida
RT (Asteraceae) suggests conserved protein-protein and
RT protein-promoter interactions between the anciently diverged
RT monocots and eudicots.
RL Plant Physiol. 133: 1831-1842 (2003)
RD PubMed: 14605235;
XX
RA Hernandez JM, Heine GF, Irani NG, Feller A, Kim MG, Matulnik T,
RA Chandler VL, Grotewold E.
RT Different mechanisms participate in the R-dependent activity of
RT the R2R3 MYB transcription factor C1.
RL J Biol Chem. 279: 48205-48213 (2004).
RD PubMed: 15347654
XX
RA Lesnick ML, Chandler VL.
RT Activation of the maize anthocyanin gene a2 is mediated by an
RT element conserved in many anthocyanin promoters.
RL Plant Physiol. 117: 437-445 (1998).
RD PubMed: 9625696
XX
SQ
AGTTGAATGGGGGTGCA
//
ID ARFAT
XX
AC S000270
XX
DT 01-August-2006 (last modified) kehi
XX
DE ARF (auxin response factor) binding site found in the promoters
DE of primary/early auxin response genes of Arabidopsis thaliana
DE (A.t.); AuxRE; See S000337; Binding site of Arabidopsis ARF1
DE (Auxin response factor1); Sequence found in NDE element in
DE Soybean (G.m.) SAUR (Small Auxin-Up RNA) 15A gene promoter; See
DE S000359, S000360; Found in D1 or D4 element in Soybean (G.m.) GH3
DE promoter; This element was enriched in the 5'-flanking region of
DE genes up-regulated by both IAA and BL (Goda et al., 2004);
XX
KW auxin; AuxRE; ARF; ARF1; Aux/IAA; SAUR; NDE; GH3; D1; D4;
XX
OS Arabidopsis thaliana; Soybean (Glycine max); Oryza sativa (rice)
XX
RA Ulmasov T, Hagen G, Guilfoyle TJ
RT Dimerization and DNA binding of auxin response factors
RL Plant J 19:309-319 (1999)
RD PubMed: 10476078;
XX
RA Nag R, Maity MK, Dasgupta M.
RT Dual DNA binding property of ABA insensitive 3 like factors
RT targeted to promoters responsive to ABA and auxin.
RL Plant Mol Biol. 59: 821-838 (2005).
RD PubMed: 16270233
XX
RA Inukai Y, Sakamoto T, Ueguchi-Tanaka M, Shibata Y, Gomi K,
RA Umemura I, Hasegawa Y, Ashikari M, Kitano H, Matsuoka M.
RT Crown rootless1, Which Is Essential for Crown Root Formation in
RT Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin
RT Signaling.
RL Plant Cell 17: 1387-1396 (2005)
RD PubMed: 15829602
XX
RA Harper RM, Stowe-Evans EL, Luesse DR, Muto H, Tatematsu K,
RA Watahiki MK, Yamamoto K, Liscum E
RT The NPH4 locus encodes the auxin response factor ARF7, a
RT conditional regulator of differential growth in aerial
RT Arabidopsis tissue
RL Plant Cell 12: 757-770 (2000)
RD PubMed: 10810148;
XX
RA Nemhauser JL, Mockler TC, Chory J.
RT Interdependency of brassinosteroid and auxin signaling in
RT Arabidopsis.
RL PLoS Biol. 2(9):E258. (2004)
RD PubMed: 15328536
XX
RA Goda H, Sawa S, Asami T, Fujioka S, Shimada Y, Yoshida S.
RT Comprehensive comparison of auxin-regulated and
RT brassinosteroid-regulated genes in Arabidopsis.
RL Plant Physiol. 134: 1555-1573 (2004).
RD PubMed: 15047898
XX
RA Hagen G, Guilfoyle T
RT Auxin-responsive gene expression: genes, promoters and regulatory
RT factors
RL Plant Mol Biol. 49 :373-385 (2002)
RC Review
RD PubMed: 12036261;
XX
SQ
TGTCTC
//
ID ARR1AT
XX
AC S000454
XX
DT 27-March-2004 (last modified) kehi
XX
DE "ARR1-binding element" found in Arabidopsis; ARR1 is a response
DE regulator; N=G/A/C/T; AGATT is found in the promoter of rice
DE non-symbiotic haemoglobin-2 (NSHB) gene (Ross et al., 2004);
XX
KW ARR1; Response regulator;
XX
OS Arabidopsis thaliana
XX
RA Sakai H, Aoyama T, Oka A.
RT Arabidopsis ARR1 and ARR2 response regulators operate as
RT transcriptional activators.
RL Plant J. 24: 703-711 (2000).
RD PubMed: 11135105
XX
RA Ross EJ, Stone JM, Elowsky CG, Arredondo-Peter R, Klucas RV,
RA Sarath G.
RT Activation of the Oryza sativa non-symbiotic haemoglobin-2
RT promoter by the cytokinin-regulated transcription factor, ARR1.
RL J Exp Bot. 55: 1721-1731 (2004).
RD PubMed: 15258171
XX
SQ
NGATT
//
ID AS1CAMV
XX
AC S000023
XX
DT 16-Jan-1998 (last modified) kehi
XX
DE "as-1 (activation sequence 1)" in CaMV 35S promoter; from -85 to
DE -58 (subdomain AI); Binding with ASF-1 (activation sequence
DE factor 1) from pea and tobacco; Expression in root and leaf;
XX
KW CaMV 35S promoter; ASF-1; leaf; root; as-1;
XX
OS Cauliflower mosaic virus; CaMV;
XX
RA Lam E, Benfey PN, Gilmartin PM, Fang R-X, Chua N-H
RT Site-specific mutations alter in vitro factor binding and change
RT promoter expression pattern in transgenic plants.
RL Proc Natl Acad Sci USA 86:7890-7894 (1989)
RD PubMed: 2813365;
XX
RA Benfey PN, Chua NH
RT The cauliflower mosaic virus 35S promoter: combinatorial
RT regulation of transcription in plants
RL Science 250:959-966 (1990)
XX
SQ
CCACTGACGTAAGGGATGACGCACAATCC
//
ID AS1LIKECSHPRA
XX
AC S000260
XX
DT 14-Oct-1999 (last modified) kehi
XX
DE as-1-like motif found in cucumber (C.s.) hydroxypyruvate
DE reductase (hprA) gene; Required for cytokinin responsiveness;
DE Also see S000261 (CYTOSITECSHPRA);
XX
KW cytokinin; as-1; as-1 TGACG motif;
XX
OS cucumber (Cucumis sativus)
XX
RA Jin G, Davey MC, Ertl JR, Chen R, Yu Z, Daniel SG, Becker WM,
RA Chen C
RT Interaction of DNA-binding proteins with the 5'-flanking region
RT of a cytokinin-responsive cucumber hydroxypyruvate reductase
RT gene
RL Plant Mol Biol 38:713-724 (1998)
RD PubMed: 9862489;
XX
SQ
AAATGACGAAAATGC
//
ID ASF1ATNOS
XX
AC S000073
XX
DT 7-Sep-2000 (last modified) seki
XX
DE Tobacco ASF-1 binding site in nopaline synthase (NOS) promoter of
DE Ti-plasmid of Agrobacterium tumefaciens (A.t.); From -131 to
DE -111; See S000312; Containing two hexamer motifs; Essential for
DE the nos promoter activity;
XX
KW nopaline synthase; ASF-1; auxin; methyl jasmonate; salicylic
KW acid;
XX
OS Agrobacterium tumefaciens
XX
RA Lam E, Katagiri F, Chua NH
RT Plant nuclear factor ASF-1 binds to an essential region of the
RT nopaline synthase promoter.
RL J Biol Chem 265:9909-9913 (1990)
RD PubMed: 2351681;
XX
RA Kim Y, Buckley K, Costa MA, An G
RT A 20 nucleotide upstream element is essential for the nopaline
RT synthase (nos) promoter activity
RL Plant Mol Biol 24: 105-117 (1994)
RD PubMed: 8111010;
XX
SQ
TGAGCTAAGCACATACGTCAG
//
ID ASF1MOTIFCAMV
XX
AC S000024
XX
DT 11-May-2006 (last modified) kehi
XX
DE "ASF-1 binding site" in CaMV 35S promoter; ASF-1 binds to two
DE TGACG motifs; See S000023 (AS1); Found in HBP-1 binding site of
DE wheat histone H3 gene; TGACG motifs are found in many promoters
DE and are involved in transcriptional activation of several genes
DE by auxin and/or salicylic acid; May be relevant to light
DE regulation; Binding site of tobacco TGA1a; TGA1a and b show
DE homology to CREB; TGA6 is a new member of the TGA family; Abiotic
DE and biotic stress differentially stimulate "as-1 element"
DE activity;
XX
KW TGACG; root; leaf; CaMV; 35S; promoter; auxin; salicylic acid;
KW light; as-1; TGA1a, TGA1b; CREB; ASF1; TGA6; shoot; xenobiotic
KW stress; SAR; SA; Disease resistance;
XX
OS CaMV; Cauliflower mosaic virus; plant; tobacco (Nicotiana
OS tabacum); Arabidopsis thaliana;
XX
RA Despres C, Chubak C, Rochon A, Clark R, Bethune T, Desveaux D,
RA Fobert PR.
RT The Arabidopsis NPR1 disease resistance protein is a novel
RT cofactor that confers redox regulation of DNA binding activity to
RT the basic domain/leucine zipper transcription factor TGA1.
RL Plant Cell 15: 2181-2191 (2003)
RD PubMed: 12953119;
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
XX
RA Benfey PN, Chua NH
RT The cauliflower mosaic virus 35S promoter: combinatorial
RT regulation of transcription in plants
RL Science 250:959-966 (1990)
XX
RA Katagiri F, Lam E, Chua NH
RT Two tobacco DNA-binding proteins with homology to the nuclear
RT factor CREB
RL Nature 31: 727-730 (1989)
RD PubMed: 2528073;
XX
RA Xiang C, Miao Z, Lam E
RT DNA-binding properties, genomic organization and expression
RT pattern of TGA6,a new member of the TGA family of bZIP
RT transcription factors in Arabidopsis thaliana
RL Plant Mol Biol 34: 403-415 (1997)
RD PubMed: 9225852
XX
RA Klinedinst S, Pascuzzi P, Redman J, Desai M, Arias J
RT A xenobiotic-stress-activated transcription factor and its
RT cognate target genes are preferentially expressed in root tip
RT meristems
RL Plant Mol Biol 42: 679-688 (2000)
RD PubMed: 10809441;
XX
RA Redman J, Whitcraft J, Johnson C, Arias J
RT Abiotic and biotic stress differentially stimulate as-1 element
RT activity in Arabidopsis
RL Plant Cell Rep. 21: 180-185 (2002)
XX
SQ
TGACG
//
ID ASF1NTPARA
XX
AC S000240
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE "ASF-1 (as-1 binding nuclear factor)" binding site found in
DE tobacco (N.t.) parA gene; Found in auxin-responsive regions;
DE as-1-like sequences in parA, parB and parC bind with ASF-1,
DE ALF-2, and ALF-1, respectively; See S000190 (ABFOS), S000238
DE (ALF1NTPARC), S000239 (ALF2NTPARB);
XX
KW as-1; ASF-1; par; auxin;
XX
OS tobacco (Nicotiana tabacum);
XX
RA Sakai T, Takahashi Y, Nagata T
RT The identification of DNA binding factor specific for as-1-like
RT sequences in auxin-responsive regions of parA, parB and parC
RL Plant Cell Physiol 39:731-739 (1998)
RD PubMed: 9729895;
XX
SQ
TTACGCAAGCAATGACAT
//
ID AT1BOX
XX
AC S000025
XX
DT 17-May-1998 (last modified) kehi;
XX
DE "AT-1 box (AT-rich element)" found in the promoter region of the
DE genes for tobacco ( N.p.) chlorophyll a/b binding protein (cab)
DE and small subunit of ribulose-1,5-bisphosphate carboxylase
DE (rbcS); Deletion of a region containing the AT-1 site in the
DE tomato RBCS3A gene strongly inhibited reporter gene expression,
DE whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a
DE negative element (Terzaghi & Cashmore, 1995);
XX
KW AT-1; cab; rbcS; photoregulated genes; light-regulated genes;
KW light; leaf; shoot;
XX
OS pea (Pisum sativum); tobacco (Nicotiana plumbaginifolia); tomato
OS (Lycopersicon esculentum);
XX
RA Datta N, Cashmore AR
RT Binding of a pea nuclear protein to promoters of certain
RT photoregulated genes is modulated by phosphorylation.
RL Plant Cell 1:1069-1077 (1989)
RD PubMed: 2562560;
XX
RA Gilmartin PM, Sarokin L, Memelink J, Chua N-H
RT Molecular light switches for plant genes.
RL Plant Cell 2:369-378 (1990)
RD PubMed: 2152164;
XX
RA Castresana C, Garcia-Luque I, Alonso E, Malik VS, Cashmore AR
RT Both positive and negative regulatory elements mediate expression
RT of a photoregulated CAB gene from Nicotiana plumbaginifolia.
RL EMBO J 7:1929-1936 (1988)
RD PubMed: 2901343; GenBank: X12512;
XX
RA Ueda T, Pichersky E, Malik VS, Cashmore AR
RT The level of expression of the tomato rbcs-3A gene is modulated
RT by a far-upstream promoter element in a developmentary regulated
RT manner.
RL Plant Cell 1:217-227 (1989)
RD PubMed: 2535544; GenBank: S44160;
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
RC Review
XX
SQ
AATATTTTTATT
//
ID ATHB1ATCONSENSUS
XX
AC S000317
XX
DT 7-Sep-2000 (last modified) seki
XX
DE Recognition sequence of Arabidopsis Athb-1 protein; Athb-1
DE protein has a HD-Zip motif (homeodomain (HD) with a closely
DE linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as
DE a dimer; See S000318; W=A/T;
XX
KW Athb-1; homeodomain; Zip; HD-Zip motif;
XX
OS Arabidopsis thaliana
XX
RA Sessa G, Morelli G, Ruberti I
RT The Athb-1 and -2 HD-Zip domains homodimerize forming complexes
RT of different DNA binding specificities
RL EMBO J 12:3507-3517 (1993)
RD PubMed: 8253077;
XX
SQ
CAATWATTG
//
ID ATHB2ATCONSENSUS
XX
AC S000318
XX
DT 7-Sep-2000 (last modified) seki
XX
DE Recognition sequence of Arabidopsis Athb-2 protein; Athb-2
DE protein has a HD-Zip motif (homeodomain (HD) with a closely
DE linked leucine zipper motif (Zip)); See S000317; S=C/G;
XX
KW Athb-2; homeodomain; Zip; HD-Zip motif;
XX
OS Arabidopsis thaliana
XX
RA Sessa G, Morelli G, Ruberti I
RT The Athb-1 and -2 HD-Zip domains homodimerize forming complexes
RT of different DNA binding specificities
RL EMBO J 12:3507-3517 (1993)
RD PubMed: 8253077;
XX
SQ
CAATSATTG
//
ID ATHB5ATCORE
XX
AC S000371
XX
DT 05-November-2005 (last modified) kehi
XX
DE Consensus binding sequence for Arabidopsis (A.T.) class I HDzip
DE (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms
DE dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding
DE specificities; ATHB5 forms heterodimers with other class I HDzip
DE proteins; See also S000475;
XX
KW Homeodomein-leucine zipper; HDzip; ATHB5; class I; HDZip I;
XX
OS Arabidopsis thaliana
XX
RA Johannesson H, Wang Y, Engstrom P
RT DNA-binding and dimerization preferences of Arabidopsis
RT homeodomain-leucine zipper transcription factors in vitro
RL Plant Mol Biol 45: 63-73 (2001)
RD PubMed: 11247607;
XX
RA Henriksson E, Olsson AS, Johannesson H, Johansson H, Hanson J,
RA Engstrom P, Soderman E.
RT Homeodomain leucine zipper class I genes in Arabidopsis.
RT Expression patterns and phylogenetic relationships.
RL Plant Physiol. 139: 509-518. (2005)
RD PubMed: 16055682
XX
SQ
CAATNATTG
//
ID ATHB6COREAT
XX
AC S000399
XX
DT 27-Aug-2002 (last modified) uchi
XX
DE Consensus binding sequence for Arabidopsis (A.T.)
DE homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of
DE the protein phosphatase ABI1 and regulates hormone responses; See
DE S000371;
XX
KW ATHB6; ABA; ABI1; homeodomain-leucine zipper;
XX
OS Arabidopsis thaliana
XX
RA Himmelbach A, Hoffmann T, Leube M, Hohener B, Grill E
RT Homeodomain protein ATHB6 is a target of the protein phosphatase
RT ABI1 and regulates hormone responses in Arabidopsis
RL EMBO J. 21:3029-3038 (2002)
RD PubMed: 12065416;
XX
SQ
CAATTATTA
//
ID ATRICHPSPETE
XX
AC S000248
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE A/T-rich sequences found in pea (P.s.) plastocyanin gene (petE)
DE promoter; Act as quantitative enhancer; Found at -289 to -255 of
DE pea PetE gene;
XX
KW A/T-rich; AT-rich; AT rich; enhancer;
XX
OS pea (Pisum sativum)
XX
RA Sandhu JS, Webster CI, Gray JC
RT A/T-rich sequences act as quantitative enhancers of gene
RT expression in transgenic tobacco and potato plants
RL Plant Mol Biol 37:885-896 (1998)
RD PubMed: 9678583;
XX
SQ
AATATACTAGTATTATTTACTAAAAAAAATC
//
ID AUXREPSIAA4
XX
AC S000026
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "AuxRE (Auxine responsive element )" of pea (P.s.) PS-IAA4/5
DE gene; Indoleacetic acid-inducible genes; domain A; TGA1a is
DE preferentially expressed in root tip meristems; TGA1a may
DE contribute to the expression of GST isoenzymes, especially in
DE root tip meristems;
XX
KW Auxin; AuxRE; root; meristem;
XX
OS pea (Pisum sativum)
XX
RA Ballas N, Wong LM, Theologis A
RT Identification of the auxin-responsive element, AuxRE, in the
RT primary indoleacetic acid-inducible gene, PS-IAA4/5, of pea
RT (Pisum sativum).
RL J Mol Biol 233:580-596 (1993)
RD PubMed: 8411166; GenBank: X68216;
XX
RA Guilfoyle T, Hagen G, Ulmasov T, Murfett J
RT How does auxin turn on genes?
RL Plant Physiol 118: 341-347 (1998)
RC Review
RD PubMed: 9765520;
XX
RA Klinedinst S, Pascuzzi P, Redman J, Desai M, Arias J
RT A xenobiotic-stress-activated transcription factor and its
RT cognate target genes are preferentially expressed in root tip
RT meristems
RL Plant Mol Biol 42: 679-688 (2000)
RD PubMed: 10809441;
XX
SQ
KGTCCCAT
//
ID AUXRETGA1GMGH3
XX
AC S000234
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "TGA-box #1" in putative auxin-resonsive element (AUXRE) of
DE soybean (G.m.) GH3 promoter; Strong binding site for proteins in
DE plant nuclear extracts;
XX
KW TGA; AUXRE; auxin; GH3;
XX
OS soybean (Glycine max)
XX
RA Liu ZB, Ulmasov T, Shi X, Hagen G, Guilfoyle TJ
RT Soybean GH3 promoter contains multiple auxin-inducible elements
RL Plant Cell 6:645-657 (1994)
RD PubMed: 8038604;
XX
RA Liu ZB, Hagen G, Guilfoyle TJ
RT A G-box-binding protein from soybean binds to the E1
RT auxin-response element in the Soybean GH3 promoter and contains a
RT proline-rich repression domain
RL Plant Physiol 115:397-407 (1997)
RD PubMed: 9342862;
XX
RA Guilfoyle T, Hagen G, Ulmasov T, Murfett J
RT How does auxin turn on genes?
RL Plant Physiol 118: 341-347 (1998)
RC Review
RD PubMed: 9765520;
XX
SQ
TGACGTAA
//
ID AUXRETGA2GMGH3
XX
AC S000235
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "TGA-box #2" in putative auxin-resonsive element (AUXRE) E1 of
DE soybean (G.m.) GH3 promoter; Strong binding site for proteins in
DE plant nuclear extracts; Hex-like element; E1 element=-249 to
DE -203; E2 element=-241 to -224; Called G-box by Liu et al.
DE (1997);
XX
KW TGA; AUXRE; auxin; GH3; E1; G-box;
XX
OS soybean (Glycine max)
XX
RA Liu ZB, Ulmasov T, Shi X, Hagen G, Guilfoyle TJ
RT Soybean GH3 promoter contains multiple auxin-inducible elements
RL Plant Cell 6:645-657 (1994)
RD PubMed: 8038604;
XX
RA Liu ZB, Hagen G, Guilfoyle TJ
RT A G-box-binding protein from soybean binds to the E1
RT auxin-response element in the Soybean GH3 promoter and contains a
RT proline-rich repression domain
RL Plant Physiol 115:397-407 (1997)
RD PubMed: 9342862;
XX
RA Guilfoyle T, Hagen G, Ulmasov T, Murfett J
RT How does auxin turn on genes?
RL Plant Physiol 118: 341-347 (1998)
RC Review
RD PubMed: 9765520;
XX
SQ
TGACGTGGC
//
ID B2GMAUX28
XX
AC S000325
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "B2"; DNase I protected sequence found in the soybean (G.m.)
DE auxin responsive gene, Aux28, promoter; Located between -310 and
DE -301; Contains a TGACGACA sequence which is similar to TGACGT/C
DE sequence found in Ocs, CaMV35S and histone H3 promoter; Contains
DE as-1 motif;
XX
KW auxin; Aux28; as-1;
XX
OS soybean (Glycine max)
XX
RA Nagao RT, Goekjian VH, Hong JC, Key JL
RT Identification of protein-binding DNA sequences in an
RT auxin-regulated gene of soybean
RL Plant Mol Biol 21: 1147-1162 (1993)
RD PubMed: 8490133;
XX
SQ
CTTGTCGTCA
//
ID BBOXSITE1STPAT
XX
AC S000398
XX
DT 27-Aug-2002 (last modified) uchi
XX
DE "10 base pair motif (site 1)" within the B-box found in the
DE potato patatin gene promoter; Involved in potato tuber-specific
DE and sucrose-inducible gene expression; Storekeeper (STK) binds to
DE this region and regulates patatin expression in potato;
XX
KW STK (Storekeeper); tuber; patatin; B-box;
XX
OS Solanum tuberosum (potato)
XX
RA Zourelidou M, de Torres-Zabala M, Smith C, Bevan MW
RT Storekeeper defines a new class of plant-specific DNA-binding
RT proteins and is a putative regulator of patatin expression
RL Plant J. 30 :489-497 (2002)
RD PubMed: 12028578;
XX
SQ
GCTAAACAAT
//
ID BIHD1OS
XX
AC S000498
XX
DT 02-August-2006 (last modified) kehi
XX
DE Binding site of OsBIHD1, a rice BELL homeodomain transcription
DE factor;
XX
KW HD; homeodomain;
XX
OS Oryza sativa (rice)
XX
RA Luo H, Song F, Goodman RM, Zheng Z.
RT Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain
RT transcriptional factor, in disease resistance responses.
RL Plant Biol (Stuttg). 7: 459-468 (2005).
RC Electrophoretic mobility shift assays with recombinant OsBIHD1
RC protein;
RD PubMed: 16163610
XX
SQ
TGTCA
//
ID BOX1PSGS2
XX
AC S000222
XX
DT 19-August-2004 (last modified) kehi
XX
DE Box 1 element in pea (P.s.) glutamine synthetase (GS2) gene; An
DE element in a 33-bp AT-rich sequence (box 1) of the 5' end of a
DE GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box
DE 1 element was used to isolate a cDNA encoding an AT-rich DNA
DE binding protein (ATBP-1) (Tjaden & Coruzzi, 1994);
XX
KW Box 1; glutamine synthetase; GS2; ATBp; ATBP-1;
XX
OS pea (Pisum sativum)
XX
RA Tjaden G, Coruzzi GM
RT A novel AT-rich DNA binding protein that combines an HMG I-like
RT DNA binding domain with a putative transcription domain
RL Plant Cell 6:107-118 (1994)
RD PubMed: 7907505;
XX
RA Tjaden G, Edwards JW, Coruzzi GM
RT cis elements and trans-acting factors affecting regulation of a
RT nonphotosynthetic light-regulated gene for chloroplast glutamine
RT synthetase
RL Plant Physiol 108:1109-1117 (1995)
RD PubMed: 7630938; GenBank: U22971;
XX
SQ
ATAGAAATCAA
//
ID BOX1PVCHS15
XX
AC S000208
XX
DT 11-May-2006 (last modified) kehi
XX
DE Box 1 of bean (P.v.) chs15 promoter; one of SBF-1 binding sites
DE in chs15 promoter; Located at -318 to -305; Involved in
DE organ-specific expression in plant development; Functions as a
DE transcriptional silencer in electroporated protoplasts derived
DE from undifferentiated suspension-cultured soybean cells; Resemble
DE the binding site for the GT-1 factor in light-responsive
DE elements; For a compilation of related GT elements and factors,
DE see Villain et al. (1996);
XX
KW Box 1; chs; chs15; CHS; SBF-1; silencer; organ-specific; Gt;
KW GT-1; GT;
XX
OS bean (Phaseolus vulgaris)
XX
RA Lawton MA, Dean SM, Dron M, Kooter JM, Kragh KM, Harrison MJ, Yu
RA L, Tanguay L, Dixon RA, Lamb CJ
RT Silencer region of a chalcone synthase promoter contains multiple
RT binding sites for a factor, SBF-1, closely related to GT-1
RL Plant Mol Biol 16:235-249 (1991)
RD PubMed: 1893099; GenBank: X59469;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
TAAAAGTTAAAAAC
//
ID BOX2PSGS2
XX
AC S000204
XX
DT 17-May-1998 (last modified) kehi
XX
DE Box 2 in glutamine synthetase (GS2) gene in pea (P.s.); Repeated
DE in tandem with a partial palindrome located between the repeats;
DE Located at ca. -300 of pea GS2;
XX
KW Box 2; glutamine synthetase; GS2;
XX
OS pea (Pisum sativum);
XX
RA Tjaden G, Edwards JW, Coruzzi GM
RT cis elements and trans-acting factors affecting regulation of a
RT nonphotosynthetic light-regulated gene for chloroplast glutamine
RT synthetase
RL Plant Physiol 108:1109-1117 (1995)
RD PubMed: 7630938; GenBank: U22971;
XX
SQ
TCTAAGCAAAG
//
ID BOX2PVCHS15
XX
AC S000209
XX
DT 11-May-2006 (last modified) kehi
XX
DE Box 2 of bean (P.v.) chs15 promoter; SBF-1 binding site; For a
DE compilation of related GT elements and factors, see Villain et
DE al. (1996);
XX
KW Box 2; chs; chs15; CHS; SBF-1; GT-1; GT;
XX
OS bean (Phaseolus vulgaris)
XX
RA Lawton MA, Dean SM, Dron M, Kooter JM, Kragh KM, Harrison MJ, Yu
RA L, Tanguay L, Dixon RA, Lamb C
RT Silencer region of a chalcone synthase promoter contains multiple
RT binding sites for a factor, SBF-1, closely related to GT-1
RL Plant Mol Biol 16:235-249 (1991)
RD PubMed: 1893099; GenBank: X59469;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
CTGTGATTAAATAT
//
ID BOX3PVCHS15
XX
AC S000210
XX
DT 11-May-2006 (last modified) kehi
XX
DE Box 3 of bean (P.v.) chs15 promoter; SBF-1 binding site; For a
DE compilation of related GT elements and factors, see Villain et
DE al. (1996);
XX
KW Box 3; chs; chs15; CHS; SBF-1; GT-1; GT;
XX
OS bean (Phaseolus vulgaris)
XX
RA Lawton MA, Dean SM, Dron M, Kooter JM, Kragh KM, Harrison MJ, Yu
RA L, Tanguay L, Dixon RA, Lamb CJ
RT Silencer region of a chalcone synthase promoter contains multiple
RT binding sites for a factor, SBF-1, closely related to GT-1
RL Plant Mol Biol 16:235-249 (1991)
RD PubMed: 1893099; GenBank: X59469;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
TATTGGTTACTAAA
//
ID BOXBPSAS1
XX
AC S000225
XX
DT 17-May-1998 (last modified) kehi
XX
DE Box B in pea (P.s.) asparagine synthetase (AS1) gene; Found at
DE -61; AS1 is negatively regulated by light; Box B binds with
DE nuclear proteins;
XX
KW BOX B; AS; AS1; light; repression; negative regulation;
XX
OS pea (Pisum sativum)
XX
RA Ngai N, Tsai FY, Coruzzi G
RT Light-induced transcriptional repression of the pea AS1 gene:
RT identification of cis-elements and transfactors
RL Plant J 12:1021-1234 (1997)
RD PubMed: 9418044;
XX
SQ
AAACGACACCGTTT
//
ID BOXC'PSAS1
XX
AC S000227
XX
DT 17-May-1998 (last modified) kehi
XX
DE Box C' in pea asparagine synthetase (AS1) gene; Found at -88; AS1
DE is negatively regulated by light; Box C' binds with nuclear
DE proteins, which was competed by a putative repressor element RE1
DE (see S000195);
XX
KW BOX C'; AS; AS1;
XX
OS pea (Pisum sativum);
XX
RA Ngai N, Tsai FY, Coruzzi G
RT Light-induced transcriptional repression of the pea AS1 gene:
RT identification of cis-elements and transfactors
RL Plant J 12:1021-1234 (1997)
RD PubMed: 9418044;
XX
SQ
TCCCGGTACACACTTCTT
//
ID BOXCPSAS1
XX
AC S000226
XX
DT 10-May-1998 (last modified) kehi
XX
DE Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at
DE -45; AS1 is negatively regulated by light; Box C binds with
DE nuclear proteins, which was competed by a putative repressor
DE element RE1 (see S000195);
XX
KW BOX C; AS; AS1;
XX
OS pea (Pisum sativum)
XX
RA Ngai N, Tsai FY, Coruzzi G
RT Light-induced transcriptional repression of the pea AS1 gene:
RT identification of cis-elements and transfactors
RL Plant J 12:1021-1234 (1997)
RD PubMed: 9418044;
XX
SQ
CTCCCAC
//
ID BOXICHS
XX
AC S000228
XX
DT 16-May-1998 (last modified) kehi
XX
DE "Box I consensus sequence in the promoters of mustard and parsley
DE chs genes; Essential for light regulation (Terzaghi & Cashmore,
DE 1995); M=A/C;
XX
KW Box I; Box 1; Unit 1; CHS; chs; light regulation;
XX
OS parsley (Petroselinum crispum); mustard (Sinapis alba);
XX
RA Block A, Dangl JL, Hahlbrock K, Schulze-Lefert P
RT Functional borders, genetic fine structure, and distance
RT requirements of cis elements mediating light responsiveness of
RT the parsley chalcone synthase promoter
RL Proc Natl Acad Sci USA 87:5387-5391(1990)
RD PubMed: 2371277
XX
RA Rocholl M, Talke-Messerer C, Kaiser T, Batschauer A
RT Unit 1 of the mustard chalcone synthase promoter is sufficient to
RT mediate light responses from different photoreceptors.
RL Plant Sci 97:189-198(1994)
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
RC Review
XX
SQ
GTCCMTCMAACCTAMC
//
ID BOXIINTPATPB
XX
AC S000296
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "Box II" found in the tobacco (N.t.) plastid atpB gene promoter;
DE Conserved in several NCII (nonconsensus type II) promoters of
DE plastid genes; Important for the activity of this NCII promoter;
DE See S000295;
XX
KW plastid; NEP; atpB; PatpB; NCII; Box I; Box II;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Kapoor S, Sugiura M
RT Identification of two essential sequence elements in the
RT nonconsensus type II PatpB-290 plastid promoter by using plastid
RT transcription extracts from cultured tobacco BY-2 cells
RL Plant Cell 11: 1799-1810 (1999)
RD PubMed: 10488244
XX
SQ
ATAGAA
//
ID BOXIIPCCHS
XX
AC S000229
XX
DT 01-August-2006 (last modified) kehi
XX
DE Core of "Box II/G box" found in the parsley (P.c.) chs genes;
DE Essential for light regulation (Terzaghi & Cashmore, 1995); See
DE S000345;
XX
KW Box II; Box 2; CHS; chs; light regulation;
XX
OS parsley (Petroselinum crispum)
XX
RA Block A, Dangl JL, Hahlbrock K, Schulze-Lefert P
RT Functional borders, genetic fine structure, and distance
RT requirements of cis elements mediating light responsiveness of
RT the parsley chalcone synthase promoter
RL Proc Natl Acad Sci USA 87:5387-5391(1990)
RD PubMed: 2371277
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
RC Review
XX
RA Nakashima K, Fujita Y, Katsura K, Maruyama K, Narusaka Y, Seki M,
RA Shinozaki K, Yamaguchi-Shinozaki K.
RT Transcriptional regulation of ABI3- and ABA-responsive genes
RT including RD29B and RD29A in seeds, germinating embryos, and
RT seedlings of Arabidopsis.
RL Plant Mol Biol. 60: 51-68 (2006)
RD PubMed: 16463099
XX
SQ
ACGTGGC
//
ID BOXINTPATPB
XX
AC S000295
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "Box I" found in the tobacco (N.t.) plastid atpB gene promoter;
DE Conserved in several NCII (nonconsensus type II) promoters of
DE plastid genes; Important for the activity of this NCII promoter;
DE See S000296;
XX
KW plastid; NEP; atpB; PatpB; NCII; Box I; Box II;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Kapoor S, Sugiura M
RT Identification of two essential sequence elements in the
RT nonconsensus type II PatpB-290 plastid promoter by using plastid
RT transcription extracts from cultured tobacco BY-2 cells
RL Plant Cell 11: 1799-1810 (1999)
RD PubMed: 10488244
XX
SQ
AATTCCATAGAATAGATAATA
//
ID BOXLCOREDCPAL
XX
AC S000492
XX
DT 06-January-2006 (last modified) kehi
XX
DE Consensus of the putative "core" sequences of box-L-like
DE sequences in carrot (D.c.) PAL1 promoter region; DCMYB1 bound to
DE these sequences in vitro; See also S000136 (Box P), S000137 (Box
DE A), S000138 (Box L); W=A/T;
XX
KW MYB; R2R3 type; PAL: Elicitor; UV-B; Dilution;
XX
OS Daucus carota (carrot)
XX
RA Maeda K, Kimura S, Demura T, Takeda J, Ozeki Y.
RT DcMYB1 acts as a transcriptional activator of the carrot
RT phenylalanine ammonia-lyase gene (DcPAL1) in response to elicitor
RT treatment, UV-B irradiation and the dilution effect.
RL Plant Mol Biol. 59: 739-752.(2005)
RD PubMed: 16270227
XX
SQ
ACCWWCC
//
ID BP5OSWX
XX
AC S000436
XX
DT 27-Jan-2004 (last modified) kehi
XX
DE OsBP-5 (a MYC protein) binding site in Wx promoter;
XX
KW MYC; Wx; Waxy;
XX
OS Oryza sativa (rice);
XX
RA Zhu Y, Cai X-L, Wang Z-Y, Hong M-M.
RT An interaction between a MYC protein and an EREBP protein is
RT involved in transcriptional regulation of the rice Wx gene.
RL J. Biol. Chem. 278: 47803-47811 (2003)
RD PubMed: 12947109;
XX
SQ
CAACGTG
//
ID BS1EGCCR
XX
AC S000352
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "BS1 (binding site 1)" found in E. gunnii Cinnamoyl-CoA reductase
DE (CCR) gene promoter; nuclear protein binding site; Required for
DE vascular expression;
XX
KW cinnamoyl-CoA reductase; vascular; BS1; stem;
XX
OS Eucalyptus gunnii
XX
RA Lacombe E, Van Doorsselaere J, Boerjan W, Boudet AM,
RA Grima-Pettenati J
RT Characterization of cis-elements required for vascular expression
RT of the cinnamoyl CoA reductase gene and for protein-DNA complex
RT formation
RL Plant J 23: 663-676 (2000)
RD PubMed: 10972892;
XX
SQ
AGCGGG
//
ID C1GMAUX28
XX
AC S000326
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "C1"; DNase I protected sequence found in the soybean (G.m.)
DE auxin responsive gene, Aux28, promoter; Located between -463 and
DE -448; A/T-rich sequence;
XX
KW Auxin; Aux28;
XX
OS soybean (Glycine max)
XX
RA Nagao RT, Goekjian VH, Hong JC, Key JL
RT Identification of protein-binding DNA sequences in an
RT auxin-regulated gene of soybean
RL Plant Mol Biol 21: 1147-1162 (1993)
RD PubMed: 8490133;
XX
SQ
TGAAAACAGTGAGTTA
//
ID C1MOTIFZMBZ2
XX
AC S000237
XX
DT 23-Sep-1999 (last modified) kehi
XX
DE "C1-motif"; Similar to Myb-box; Found in the promoter region of
DE maize (Z.m.) Bronze2 ( glutathione S-transferase) gene; C1
DE binding; C1-motif and R-motif were shown to be important for full
DE R and C1 activation of the Bz2 promoter; S=C or G;
XX
KW C1-motif; Bronze2; Myb-box; glutathione S-transferase; C1; seed;
XX
OS maize (Zea mays)
XX
RA Bodeau JP, Walbot V
RT Structure and regulation of the maize Bronze2 promoter
RL Plant Mol Biol 32:599-609 (1996)
RD PubMed: 8980512;
XX
SQ
TAACTSAGTTA
//
ID C2GMAUX28
XX
AC S000327
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "C2"; DNase I protected sequence found in the soybean (G.m.)
DE auxin responsive gene, Aux28, promoter; Located between -552 and
DE -553; Contains (ATT)4 sequence;
XX
KW Auxin; Aux28;
XX
OS soybean (Glycine max)
XX
RA Nagao RT, Goekjian VH, Hong JC, Key JL
RT Identification of protein-binding DNA sequences in an
RT auxin-regulated gene of soybean
RL Plant Mol Biol 21: 1147-1162 (1993)
RD PubMed: 8490133;
XX
SQ
AATAATAATAATAATAAATA
//
ID CAATBOX1
XX
AC S000028
XX
DT 17-May-1998 (last modified) kehi
XX
DE "CAAT promoter consensus sequence" found in legA gene of pea;
XX
KW CAAT; legA; seed;
XX
OS pea (Pisum sativum)
XX
RA Shirsat A, Wilford N, Croy R, Boulter D
RT Sequences responsible for the tissue specific promoter activity
RT of a pea legumin gene in tobacco.
RL Mol Gen Genet 215:326-331 (1989)
RD PubMed: 2710102;
XX
SQ
CAAT
//
ID CAATBOX2
XX
AC S000029
XX
DT 5-Jun-1997 (last modified) kehi
XX
DE "CAAT box" found in the 5' upstream region (-80) of many
DE eukaryotic genes; GGC(or T)CAATCT;
XX
KW eukaryotic gene; CAAT;
XX
OS eukaryote;
XX
SQ
GGCCAATCT
//
ID CACGCAATGMGH3
XX
AC S000368
XX
DT 16-Feb-2001 (last modified) seki
XX
DE Sequence found in D4 element in Soybean (G.m.) GH3 gene promoter;
DE Showed constitutive activity with TGTCTC element (See S000270);
DE Confers auxin inducibility; Binding site of nuclear protein; See
DE also S000369;
XX
KW D1; D4; GH3; Auxin;
XX
OS Soybean (Glycine max)
XX
RA Ulmasov T, Liu ZB, Hagen G, Guilfoyle TJ
RT Composite structure of auxin response elements
RL Plant Cell 7: 1611-1623 (1995)
RD PubMed: 7580254;
XX
SQ
CACGCAAT
//
ID CACGTGMOTIF
XX
AC S000042
XX
DT 06-January-2006 (last modified) kehi
XX
DE "CACGTG motif"; "G-box"; Binding site of Arabidopsis GBF4; C.
DE roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as
DE transcriptional repressors of the Str promoter via direct
DE interaction with the G-box; See S000345; Essential for expression
DE of beta-phaseolin gene during embryogenesis in bean, tobacco,
DE Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene
DE expression via GCC box and non-GCC box cis-element (Myb1
DE (GTTAGTT) and G-box (CACGTG)); A prominent hit by in silico
DE analysis in both induced and repressed phyA-responsive promoters
DE (Hudson and Quail 2003); Review by Terzaghi WB, Cashmore AR.
DE "Light-regulated transcription" in Annu Rev Plant Physiol Plant
DE Mol Biol 46:445-474 (1995);
XX
KW G box; G-box; rbcs; chs; ACGT element; adh; Bz-2; R-motif; STR;
KW GT-1; GBF; elicitor; bZIP; napin; strictosidine synthase; cell;
KW leaf; shoot; Pti4; ERF; PR;
XX
OS tomato (Lycopersicon esculentum); Arabidopsis thaliana;
OS snapdragon (Antirrhinum majus); wheat (Triticum aestivum);
OS parsley: maize (Zea mays); periwinkle (Catharanthus roseus);
OS Brassica napus; bean (Phaseolus vulgaris);
XX
RA Chandrasekharan MB, Bishop KJ, Hall TC.
RT Module-specific regulation of the beta-phaseolin promoter during
RT embryogenesis.
RL Plant J. 33: 853-866 (2003)
RD PubMed: 12609027;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
RA Pasquali G, Erven ASW,Ouwerkerk PBF, Menke FLH, Memelink J
RT The promoter of the strictosidine synthase gene from periwinkle
RT confers elicitor-inducible expression in transgenic tobacco and
RT binds nuclear factors GT-1 and GBF
RL Plant Mol Biol 39:1299-1310 (1999)
RD PubMed: 10380815;
XX
RA Menkens AE, Schindler U, Cashmore AR
RT The G-box: a ubiquitous regulatory DNA element in plants bound by
RT the GBF family of bzip proteins
RL Trends in Biochemistry 20:506-510 (1995)
RC Review
RD PubMed: 8571452;
XX
RA Chakravarthy S, Tuori RP, DAscenzo MD, Fobert PR, Despres C,
RA Martin GB
RT The tomato transcription factor Pti4 regulates defence-related
RT gene expression via GCC box and non-GCC box cis elements
RL Plant Cell 15: 3033-3050 (2003)
RD PubMed: 14630974;
XX
RA Siberil Y, Benhamron S, Memelink J, Giglioli-Guivarc'h N,
RA Thiersault M, Boisson B, Doireau P, Gantet P
RT Catharanthus roseus G-box binding factors 1 and 2 act as
RT repressors of strictosidine synthase gene expression in cell
RT cultures
RL Plant Mol Biol 45: 477-488 (2001)
RD PubMed: 11352466;
XX
SQ
CACGTG
//
ID CACTFTPPCA1
XX
AC S000449
XX
DT 19-August-2004 (last modified) kehi
XX
DE Tetranucleotide (CACT) is a key component of Mem1 (mesophyll
DE expression module 1) found in the cis-regulatory element in the
DE distal region of the phosphoenolpyruvate carboxylase (ppcA1) of
DE the C4 dicot F. trinervia; Y=T/C;
XX
KW mesohpyll; CACT;
XX
OS Flaveria trinervia
XX
RA Gowik U, Burscheidt J, Akyildiz M, Schlue U, Koczor M, Streubel
RA M, Westhoff P.
RT cis-Regulatory elements for mesophyll-specific gene expression in
RT the C4 plant Flaveria trinervia, the promoter of the C4
RT phosphoenolpyruvate carboxylase gene.
RL Plant Cell. 16:1077-1090(2004)
RD PubMed: 15100398
XX
SQ
YACT
//
ID CANBNNAPA
XX
AC S000148
XX
DT 10-May-1998 (last modified) kehi
XX
DE Core of "(CA)n element" in storage protein genes in Brasica napus
DE (B.n.); embryo- and endosperm-specific transcription of napin
DE (storage protein) gene, napA; seed specificity; activator and
DE repressor;
XX
KW (CA)n element; napA; napin; seed; storage protein;
XX
OS Brassica napus;
XX
RA Ellerstrom M, Stalberg K, Ezcurra I, Rask L
RT Functional dissection of a napin gene promoter: identification of
RT promoter elements required for embryo and endosperm-specific
RT transcription.
RL Plant Mol Biol 32:1019-1027 (1996)
RD PubMed: 9002600;
XX
SQ
CNAACAC
//
ID CAREOSREP1
XX
AC S000421
XX
DT 28-November-2004 (last modified) kehi
XX
DE "CAREs (CAACTC regulatory elements)" found in the promoter region
DE of a cystein proteinase (REP-1) gene in rice;
XX
KW aleurone; GARE; gibberellin; seed;
XX
OS Oryza sativa (rice)
XX
RA Sutoh K, Yamauchi D.
RT Two cis-acting elements necessary and sufficient for
RT gibberellin-upregulated proteinase expression in rice seeds
RL Plant J. 34:635-645 (2003)
RD PubMed: 12787245;
XX
SQ
CAACTC
//
ID CARG1ATAP3
XX
AC S000347
XX
DT 31-May-2006 (last modified) kehi
XX
DE "CArG1" found in the Arabidopsis (A.t.) APETALA3 (AP3) gene
DE promoter; Binding site of AP3/PI heterodimer; Binding site of
DE AP3/PI heterodimer; Binding site for a positively acting factors;
DE MADS domain transcription factors bind with a consensus sequence
DE called the CArG box; See S000348, S000349;
XX
KW APETALA3; MADS; CArG box; PI; flower;
XX
OS Arabidopsis thaliana
XX
RA Tilly JJ, Allen DW, Jack T
RT The CArG boxes in the promoter of the Arabidopsis floral organ
RT identity gene APETALA3 mediate diverse regulatory effects
RL Development 125: 1647-1657 (1998)
RD PubMed: 9521903;
XX
RA Hill TA, Day CD, Zondlo SC, Thackeray AG, Irish VF
RT Discrete spatial and temporal cis-acting elements regulate
RT transcription of the Arabidopsis floral homeotic gene APETALA3
RL Development125: 1711-1721 (1998)
RD PubMed: 9521909;
XX
RA Folter S, Angenent GC.
RT trans meets cis in MADS science.
RL Trends Plant Sci. 11:224-231 (2006)
RC Review
RD PubMed: 16616581
XX
SQ
GTTTACATAAATGGAAAA
//
ID CARG2ATAP3
XX
AC S000348
XX
DT 31-May-2006 (last modified) kehi
XX
DE "CArG2" found in the Arabidopsis (A.t.) APETALA3 (AP3) gene
DE promoter; Mutations in CArG2 result in a decrease in the
DE expression in petals, but the expression pattern in stamens is
DE unchanged; See S000348, S000349;
XX
KW APETALA3; MADS; CArG box; PI; flower;
XX
OS Arabidopsis thaliana
XX
RA Tilly JJ, Allen DW, Jack T
RT The CArG boxes in the promoter of the Arabidopsis floral organ
RT identity gene APETALA3 mediate diverse regulatory effects
RL Development 125: 1647-1657 (1998)
RD PubMed: 9521903;
XX
RA Hill TA, Day CD, Zondlo SC, Thackeray AG, Irish VF
RT Discrete spatial and temporal cis-acting elements regulate
RT transcription of the Arabidopsis floral homeotic gene APETALA3
RL Development125: 1711-1721 (1998)
RD PubMed: 9521909;
XX
RA Folter S, Angenent GC.
RT trans meets cis in MADS science.
RL Trends Plant Sci. 11:224-231(2006)
RD PubMed: 16616581
XX
SQ
CTTACCTTTCATGGATTA
//
ID CARG3ATAP3
XX
AC S000349
XX
DT 31-May-2006 (last modified) kehi
XX
DE "CArG3" found in the Arabidopsis (A.t.) APETALA3 (AP3) gene
DE promoter; Binding site of AP3/PI heterodimer; Binding site for a
DE negatively acting factors; Binding sequence of Arabidopsis (A.t.)
DE MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and
DE AGAMOUS; AP1, AG, and AP3-PI complexes induce similar
DE conformational changes on a CArG-box sequence; See S000347,
DE S000348, S000338;
XX
KW APETALA3; MADS; CArG box; PI; PISTILLATA; APETALA1; flower;
XX
OS Arabidopsis thaliana
XX
RA Tilly JJ, Allen DW, Jack T
RT The CArG boxes in the promoter of the Arabidopsis floral organ
RT identity gene APETALA3 mediate diverse regulatory effects
RL Development 125: 1647-1657 (1998)
RD PubMed: 9521903;
XX
RA Hill TA, Day CD, Zondlo SC, Thackeray AG, Irish VF
RT Discrete spatial and temporal cis-acting elements regulate
RT transcription of the Arabidopsis floral homeotic gene APETALA3
RL Development125: 1711-1721 (1998)
RD PubMed: 9521909;
XX
RA Riechmann JL, Wang M, Meyerowitz EM
RT DNA-binding properties of Arabidopsis MADS domain homeotic
RT proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS
RL Nucleic Acids Res 24: 3134-3141 (1996)
RD PubMed: 8774892;
XX
RA Folter S, Angenent GC.
RT trans meets cis in MADS science.
RL Trends Plant Sci. 11:224-231(2006)
RD PubMed: 16616581
XX
SQ
CTTTCCATTTTTAGTAAC
//
ID CARGATCONSENSUS
XX
AC S000404
XX
DT 31-May-2006 (last modified) kehi
XX
DE "CArG consensus" sequence found in the promoter of Arabidopsis
DE (A.t.) SOC1 which is the MADS-box flowering-time gene; FLC is a
DE component of the vernalization (low-temperature) pathway binds
DE directly to this site and blocks transcriptional activation of
DE SOC1 by CONSTANS (CO); See also S000342 (AGAMOUSATCONSENSUS);
DE W=A/T;
XX
KW SOC1; Flowering time; CONSTANS; FLC;
XX
OS Arabidopsis thaliana
XX
RA Hepworth SR, Valverde F, Ravenscroft D, Mouradov A, Coupland G
RT Antagonistic regulation of flowering-time gene SOC1 by CONSTANS
RT and FLC via separate promoter motifs
RL EMBO J. 21: 4327-4337 (2002)
RD PubMed: 12169635;
XX
RA Michaels SD, Ditta G, Gustafson-Brown C, Pelaz S, Yanofsky M,
RA Amasino RM.
RT AGL24 acts as a promoter of flowering in Arabidopsis and is
RT positively regulated by vernalization.
RL Plant J. 33: 867-874 (2003)
RD PubMed: 12609028;
XX
RA Hong RL, Hamaguchi L, Busch MA, Weigel D.
RT Regulatory elements of the floral homeotic gene AGAMOUS
RT identified by phylogenetic footprinting and shadowing.
RL Plant Cell 15:1296-1309 (2003)
RD PubMed: 12782724
XX
RA Folter S, Angenent GC.
RT trans meets cis in MADS science.
RL Trends Plant Sci. 11:224-231(2006)
RC Review
RD PubMed: 16616581
XX
SQ
CCWWWWWWGG
//
ID CARGCW8GAT
XX
AC S000431
XX
DT 31-May-2006 (last modified) kehi
XX
DE A variant of CArG motif (see S000404), with a longer A/T-rich
DE core; Binding site for AGL15 (AGAMOUS-like 15); W=A/T;
XX
KW CArG; AGL15; AGAMOUS; MADS;
XX
OS Arabidopsis thaliana
XX
RA Tang W, Perry SE.
RT Binding site selection for the plant MADS domain protein AGL15:
RT an in vitro and in vivo study.
RL J Biol Chem.278:28154-28159 (2003)
RD PubMed: 12743119;
XX
RA Folter S, Angenent GC.
RT trans meets cis in MADS science.
RL Trends Plant Sci. 11:224-231 (2006)
RC review
RD PubMed: 16616581
XX
SQ
CWWWWWWWWG
//
ID CARGNCAT
XX
AC S000446
XX
DT 31-May-2006 (last modified) kehi
XX
DE Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region
DE of DTA1 (AtGA2ox6); A relevant cis element for the response to
DE AGL15 (AGAMOUS-like 15) in vivo; W=A/T; See S000431 (C-Wx8-G),
DE S000404 (CArG consensus; CC-Wx6-GG);
XX
KW MADS; AGAMOUS; AGL; embryo;
XX
OS Arabidopsis thaliana;
XX
RA Wang H, Caruso LV, Downie AB, Perry SE.
RT The embryo MADS domain protein AGAMOUS-Like 15 directly regulates
RT expression of a gene encoding an enzyme involved in gibberellin
RT metabolism.
RL Plant Cell 16:1206-1219 (2004)
RD PubMed: 15084721
XX
RA Folter S, Angenent GC.
RT trans meets cis in MADS science.
RL Trends Plant Sci. 11:224-231 (2006)
RC review
RD PubMed: 16616581
XX
SQ
CCWWWWWWWWGG
//
ID CATATGGMSAUR
XX
AC S000370
XX
DT 11-Mar-2001 (last modified) kehi
XX
DE Sequence found in NDE element in soybean (G.m.) SAUR (Small
DE Auxin-Up RNA) 15A gene promoter; Involved in auxin
DE responsiveness; See S000359, S000360;
XX
KW SAUR; NDE; auxin;
XX
OS soybean (Glycine max)
XX
RA Xu N, Hagen G, Guilfoyle T
RT Multiple auxin response modules in the soybean SAUR 15A promoter
RL Plant Sci 126: 193-201 (1997)
XX
SQ
CATATG
//
ID CBFHV
XX
AC S000497
XX
DT 22-June-2006 (last modified) kehi
XX
DE Binding site of barley (H.v.) CBF1, and also of barley CBF2; CBF
DE = C-repeat (CRT) binding factors; CBFs are also known as
DE dehydration-responsive element (DRE) binding proteins (DREBs);
DE See also S000411 (SQ=GTCGAC); R=A/G; Y=C/T;
XX
KW CBF; AP2 domain; CRT/DRE; low temperature;
XX
OS Hordeum vulgare (barley)
XX
RA Xue GP
RT Characterisation of the DNA-binding profile of barley HvCBF1
RT using an enzymatic method for rapid, quantitative and
RT high-throughput analysis of the DNA-binding activity.
RL Nucleic Acids Res. 30: e77 (2002)
RD PubMed: 12140339
XX
RA Svensson JT, Crosatti C, Campoli C, Bassi R, Stanca AM, Close TJ,
RA Cattivelli L.
RT Transcriptome analysis of cold acclimation in barley albina and
RT xantha mutants.
RL Plant Physiol. 141:257-270. (2006)
RD PubMed: 16603669
XX
SQ
RYCGAC
//
ID CCA1ATLHCB1
XX
AC S000149
XX
DT 10-May-1998 (last modified) kehi
XX
DE CCA1 binding site; CCA1 protein (myb-related transcription
DE factor) interact with two imperfect repeats of AAMAATCT in
DE Lhcb1*3 gene of Arabidopsis thaliana (A.t.); Related to
DE regulation by phytochrome;
XX
KW CCA1; Lhcb; shoot; leaf;
XX
OS Arabidopsis thaliana;
XX
RA Wang Z-Y, Kenigsbuch D, Sun L, Harel E, Ong MS, Tobin EM
RT A myb-related transcription factor is involved in the phytochrome
RT regulation of an Arabidopsis Lhcb gene.
RL Plant cell 9:491-507 (1997)
RD PubMed: 9144958;
XX
SQ
AAMAATCT
//
ID CCAATBOX1
XX
AC S000030
XX
DT 04-January-2007 (last modified) kehi
XX
DE Common sequence found in the 5'-non-coding regions of eukaryotic
DE genes; "CCAAT box" found in the promoter of heat shock protein
DE genes; Located immediately upstream from the most distal HSE of
DE the promoter; "CCAAT box" act cooperatively with HSEs to increase
DE the hs promoter activity;
XX
KW HSE (Heat shock element); CCAAT box;
XX
OS eukaryotes; Glycine max (Soybean)
XX
RA Rieping M, Schoffl F
RT Synergistic effect of upstream sequences, CCAAT box elements, and
RT HSE sequences for enhanced expression of chimaeric heat shock
RT genes in transgenic tobacco
RL Mol Gen Genet. 231: 226-232 (1992)
RD PubMed: 1736093;
XX
RA Haralampidis K, Milioni D, Rigas S, Hatzopoulos P
RT Combinatorial interaction of cis elements specifies the
RT expression of the Arabidopsis AtHsp90-1 gene
RL Plant Physiol. 129: 1138-1149 (2002)
RD PubMed: 12114568;
XX
RA Wenkel S, Turck F, Singer K, Gissot L, Le Gourrierec J, Samach A,
RA Coupland G.
RT CONSTANS and the CCAAT Box Binding Complex Share a Functionally
RT Important Domain and Interact to Regulate Flowering of
RT Arabidopsis.
RL Plant Cell. 18:2971-2984 (2006)
RD PubMed: 17138697
XX
SQ
CCAAT
//
ID CCTCGTGTCTCGMGH3
XX
AC S000369
XX
DT 16-Feb-2001 (last modified) seki
XX
DE Sequence found in D1 element in Soybean (G.m.) GH3 gene promoter;
DE Showed constitutive activity with TGTCTC element (See S000270);
DE Confers auxin inducibility; Binding site of nuclear protein; See
DE also S000368;
XX
KW D1; D4; GH3; Auxin;
XX
OS Soybean (Glycine max)
XX
RA Ulmasov T, Liu ZB, Hagen G, Guilfoyle TJ
RT Composite structure of auxin response elements
RL Plant Cell 7: 1611-1623 (1995)
RD PubMed: 7580254;
XX
SQ
CCTCGTGTCTC
//
ID CDA1ATCAB2
XX
AC S000440
XX
DT 28-Jan-2004 (last modified) kehi
XX
DE CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark
DE response element) f of chlorophyll a/b-binding protein2 (CAB2)
DE gene in Arabidopsis;
XX
KW dark response; CAB2;
XX
OS Arabidopsis thaliana
XX
RA Maxwell BB, Andersson CR, Poole DS, Kay SA, Chory J.
RT HY5, circadian clock-assosiated 1, and a cis-lelement, DET1 dark
RT response element, mediate DET1 regulation of chlorophyll
RT a/b-binding protein2 expression.
RL Plant Physiol. 133: 1565-1577 (2003)
RD PubMed: 14563928;
XX
SQ
CAAAACGC
//
ID CE3OSOSEM
XX
AC S000282
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "CE3 (Coupling Element 3)" found in the promoter of the rice
DE (O.s.) Osem gene; Required for ABA-responsiveness and VP1
DE activation; Binding site of TRAB1; Motif A and CE3 (S000281) are
DE functionally equivalent; TRAB1, bZIP transcription factor,
DE interacts with VP1 and mediates abscisic acid-induced
DE transcritption;
XX
KW CE3; Motif A; AVRE; CE3; ABA; VP1; TRAB1; Osem; Em; bZIP; seed;
XX
OS rice (Oryza sativa)
XX
RA Hobo T, Asada M, Kowyama Y, Hattori T
RT ACGT-containing abscisic acid response element (ABRE) and
RT coupling element 3 (CE3) are functionally equivalent
RL Plant J 19: 679-689 (1999)
RD PubMed: 10571853;
XX
RA Hobo T, Kowyama Y, Hattori T
RT A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic
RT acid-induced transcription
RL Proc Natl Acad Sci USA 96: 15348-15353 (1999)
RD PubMed: 10611387;
XX
SQ
AACGCGTGTC
//
ID CELLCYCLESC
XX
AC S000031
XX
DT 17-May-1998 (last modified) kehi
XX
DE "cell cycle box" found in URS2 (-940/-200) of HO gene of
DE S.cerevisiae; cell-cycle-specific activation of transcription;
XX
KW cell cycle box; URS2; HO gene;
XX
OS yeast (Saccharomyces cerevisiae)
XX
RA Breeden L, Nasmyth K
RT Cell cycle control of the yeast HO gene: cis- and trans-acting
RT regulators.
RL Cell 48:389-397 (1987)
RD PubMed: 3542227;
XX
RA Nasmyth K, Adolf G, Lydall D, Seddon A
RT The identification of a second cell cycle control on the HO
RT promoter in yeast: cell cycle regulation of SW15 nuclear entry.
RL Cell 62:631-647 (1990)
RD PubMed: 2167175;
XX
SQ
CACGAAAA
//
ID CEREGLUBOX1PSLEGA
XX
AC S000032
XX
DT 17-May-1998 (last modified) kehi
XX
DE "cereal glutenin box" in pea legumin gene (legA); sequence
DE homologous to the cereal glutenin gene control element ("-300
DE element");
XX
KW cereal; glutenin; legumin; legA; seed;
XX
OS pea (Pisum sativum)
XX
RA Shirsat A, Wilford N, Croy R, Boulter D
RT Sequences responsible for the tissue specific promoter activity
RT of a pea legumin gene in tobacco.
RL Mol Gen Genet 215:326-331 (1989)
RD PubMed: 2710102;
XX
SQ
TGTTAAAGT
//
ID CEREGLUBOX2PSLEGA
XX
AC S000033
XX
DT 17-May-1998 (last modified) kehi
XX
DE "cereal glutenin box" in pea legumin gene (legA); sequence
DE homologous to the cereal glutenin gene control element ("-300
DE element");
XX
KW legumin; glutenin; cereal; legA; seed;
XX
OS pea (Pisum sativum)
XX
RA Shirsat A, Wilford N, Croy R, Boulter D
RT Sequences responsible for the tissue specific promoter activity
RT of a pea legumin gene in tobacco.
RL Mol Gen Genet 215:326-331 (1989)
RD PubMed: 2710102;
XX
SQ
TGAAAACT
//
ID CEREGLUBOX3PSLEGA
XX
AC S000034
XX
DT 17-May-1998 (last modified) kehi
XX
DE "cereal glutenin box" in pea (P.s.) legumin gene (legA); sequence
DE homologous to the cereal glutenin gene control elements;
XX
KW legumin; cereal; glutenin; seed;
XX
OS pea (Pisum sativum)
XX
RA Shirsat A, Wilford N, Croy R, Boulter D
RT Sequences responsible for the tissue specific promoter activity
RT of a pea legumin gene in tobacco.
RL Mol Gen Genet 215:326-331 (1989)
RD PubMed: 2710102;
XX
SQ
TGTAAAAGT
//
ID CGACGOSAMY3
XX
AC S000205
XX
DT 17-May-1998 (last modified) kehi
XX
DE "CGACG element" found in the GC-rich regions of the rice (O.s.)
DE Amy3D and Amy3E amylase genes, but not in Amy3E gene; May
DE function as a coupling element for the G box element;
XX
KW amylase;
XX
OS rice (Oryza sativa);
XX
RA Hwang YS, Karrer EE, Thomas BR, Chen L, Rodriguez RL
RT Three cis-elements required for rice alpha-amylase Amy3D
RT expression during sugar starvation
RL Plant Mol Biol 36:331-341 (1998)
RD PubMed: 9484474;
XX
SQ
CGACG
//
ID CGCGBOXAT
XX
AC S000501
XX
DT 04-August-2006 (last modified) kehi
XX
DE "CGCG box" recognized by AtSR1-6 (Arabidopsis thaliana
DE signal-responsive genes); Multiple CGCG elements are found in
DE promoters of many genes; Ca++/calmodulin binds to all AtSRs;
DE V=A/C/G; B=G/T/C;
XX
KW calmodulin
XX
OS Arabidopsis thaliana
XX
RA Yang T, Poovaiah BW.
RT A calmodulin-binding/CGCG box DNA-binding protein family involved
RT in multiple signaling pathways in plants.
RL J Biol Chem. 277:45049-45058. (2002)
RD PubMed: 12218065
XX
SQ
VCGCGB
//
ID CGF1ATCAB2
XX
AC S000213
XX
DT 11-May-2006 (last modified) kehi
XX
DE CGF-1 binding site in the Arabidopsis (A.t.) cab2 gene promoter;
DE CGF-1=CAB GATA Factor 1; Found at -74 to -42; Contains a highly
DE conserved, repeated GATA motif termed I-box (see S000124,
DE S000199); For GATA motif, see S000039; The binding specificity of
DE CGF-1 appears to be related to GT-family of DNA-binding proteins;
DE For a compilation of related GT elements and factors, see Villain
DE et al. (1996);
XX
KW CGF; cab; cab2; CGF-1; GT; leaf; shoot;
XX
OS Arabidopsis thaliana;
XX
RA Anderson SL, Teakle GR, Martino-Catt SJ, Kay SA
RT Circadian clock- and phytochrome-regulated transcription is
RT conferred by a 78 bp cis-acting domain of the Arabidopsis CAB2
RT promoter
RL Plant J 6:457-470 (1994)
RD PubMed: 7987408;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC review
RD PubMed: 10366876
XX
SQ
GATAAAGATTACTTCAGATATAACAAACGTTAC
//
ID CGTGTSPHZMC1
XX
AC S000294
XX
DT 10-Feb-2000 (last modified) seki
XX
DE Sequence found in the maize (Z.m.) C1 gene promoter; Located
DE between -147 to -132; Containing Sph element; Required for ABA
DE responsiveness; See S000154, S000293;
XX
KW C1; anthocyanin pathway; ABA; VP1; light; Sph;
XX
OS maize (Zea mays)
XX
RA Kao CY, Cocciolone SM, Vasil IK, McCarty DR
RT Localization and interaction of the cis-acting elements for
RT abscisic acid, VIVIPAROUS1, and light activation of the C1 gene
RT of maize
RL Plant Cell 8: 1171-1179 (1996)
RD PubMed: 8768375
XX
SQ
CGTGTCGTCCATGCAT
//
ID CIACADIANLELHC
XX
AC S000252
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE Region necessary for circadian expression of tomato (L.e.) Lhc
DE gene;
XX
KW circadian; light; Lhc; leaf; shoot;
XX
OS tomato (Lycopersicon esculentum)
XX
RA Piechulla B, Merforth N, Rudolph B
RT Identification of tomato Lhc promoter regions necessary for
RT circadian expression
RL Plant Mol Biol 38:655-662 (1998)
RD PubMed: 9747810;
XX
SQ
CAANNNNATC
//
ID CMSRE1IBSPOA
XX
AC S000511
XX
DT 04-January-2007 (last modified) kehi
XX
DE CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1)
DE found in the promoter of sweet potato (I.b.) sporamin A gene;
XX
KW sucrose; sporamin; sugar-induced; SpoA;
XX
OS Ipomoea batatas (sweet potato)
XX
RA Morikami A, Matsunaga R, Tanaka Y, Suzuki S, Mano S, Nakamura K.
RT Two cis-acting regulatory elements are involved in the
RT sucrose-inducible expression of the sporamin gene promoter from
RT sweet potato in transgenic tobacco.
RL Mol Genet Genomics. 272:690-699 (2005)
RD PubMed: 15654621
XX
SQ
TGGACGG
//
ID CONSERVED11NTZMATP1
XX
AC S000301
XX
DT 10-Feb-2000 (last modified) seki
XX
DE Conserved 11 nt sequence found in the maize (Z.m.) mitochondrial
DE atp1 promoter; Located between -5 and +6; Essential for the
DE expression;
XX
KW mitochondria; atp1;
XX
OS maize (Zea mays)
XX
RA Rapp WD, Stern DB
RT A conserved 11 nucleotide sequence contains an essential promoter
RT element of the maize mitochondrial atp1 gene
RL EMBO J 11: 1065-1073 (1992)
RD PubMed: 1372246
XX
SQ
ACGTATTAAAA
//
ID COREOS
XX
AC S000469
XX
DT 24-April-2005 (last modified) kehi
XX
DE CORE (coordinate regulatory element for antioxidant defense)
DE conserved on the promoter regions of three antioxidant defense
DE genes in rice: cytosolic superoxide dismutase, cytosolic
DE thioredoxin, and glutaredoxin; K=T/G; W=T/A; Y=T/C; R=A/G;
DE M=C/A;
XX
KW oxidative stress; antioxidant;
XX
OS Oryza sativa (rice)
XX
RA Tsukamoto S, Morita S, Hirano E, Yokoi H, Masumura T, Tanaka K.
RT A novel cis-element that is responsive to oxidative stress
RT regulates three antioxidant defense genes in rice.
RL Plant Physiol. 137: 317-327.(2005)
RD PubMed: 15618434
XX
SQ
AAKAATWYRTAWATAAAAMTTTTATWTA
//
ID CPBCSPOR
XX
AC S000491
XX
DT 30-November-2005 (last modified) kehi
XX
DE The sequence critical for Cytokinin-enhanced Protein Binding in
DE vitro, found in -490 to -340 of the promoter of the cucumber (CS)
DE POR (NADPH-protochlorophyllide reductase) gene;
XX
KW cytokinin; chlorophyll; chloroplast;
XX
OS Cucumis sativus L. (cucumber)
XX
RA Fusada N, Masuda T, Kuroda H, Shimada H, Ohta H, Takamiya K.
RT Identification of a Novel Cis-Element Exhibiting
RT Cytokinin-Dependent Protein Binding in Vitro in the 5'-region of
RT NADPH-Protochlorophyllide Oxidoreductase Gene in Cucumber.
RL Plant Mol Biol. 59: 631-645 (2005).
RD PubMed: 16244912
XX
SQ
TATTAG
//
ID CPRFPCCHS
XX
AC S000313
XX
DT 8-February-2006 (last modified) kehi
XX
DE "BoxII"; Binding site of CPRF-1, -2, -3 and -4(Common Plant
DE Regulatory Factor) in the parsley (P.c.) light responsive
DE chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP
DE class transcription factors; CPRF proteins participates in the
DE light-mediated activation of the CHS gene in parsley; "ACE"; The
DE proline-rich domains of CPRF1 and 4 activate transcription;
DE CPRF1-containing bZIP heterodimer interacts with ACE in vivo;
XX
KW BoxII; CPRF; bZIP; leaf; shoot; CHS; ACE; light; bZIP;
XX
OS Parsley (Petroselinum crispum)
XX
RA Weisshaar B, Armstrong GA, Block A, da Costa e Silva O, Hahlbrock
RA K.
RT Light-inducible and constitutively expressed DNA-binding proteins
RT recognizing a plant promoter element with functional relevance in
RT light responsiveness
RL EMBO J 10: 1777-1786 (1991)
RD PubMed: 2050115;
XX
RA Sprenger-Haussels M, Weisshaar B
RT Transactivation properties of parsley proline-rich bZIP
RT transcription factors
RL Plant J 22: 1-8 (2000)
RD PubMed: 10792815;
XX
SQ
CCACGTGGCC
//
ID CRTDREHVCBF2
XX
AC S000411
XX
DT 22-June-2006 (last modified) kehi
XX
DE Preferred sequence for AP2 transcriptional activator HvCBF2 of
DE barley; "Core CRT/DRE motif"; HvCBF2 bound to a (G/a)(T/c)CGAC
DE core motif (Xue, 2003); DNA binding is regulated by temperature;
DE This motif was erroneously ID-labeled in PLACEdb as CDTDREHVCBF2,
DE and was corrected on 22 June, 2006;
XX
KW cold; AP2; CRT/DRE; CBF;
XX
OS Hordeum vulgare (barley)
XX
RA Xue GP
RT The DNA-binding activity of an AP2 transcriptional activator
RT HvCBF2 involved in regulation of low-temperature responsive genes
RT in barley is modulated by temperature.
RL Plant J. 33: 373-383 (2003)
RD PubMed: 12535350;
XX
SQ
GTCGAC
//
ID CTRMCAMV35S
XX
AC S000460
XX
DT 27-March-2004 (last modified) kehi
XX
DE CT-rich motif (inverted GAGA) found in a 60-nucleotide region
DE (S1) downstream of the transcription start site of the CaMV 35S
DE RNA; Can enhance gene expression; Inverted GAGA; See also
DE S000405, S000427 (GAGA); (TC)4T;
XX
KW CaMV 35S; enhancer;
XX
OS Cauliflower mosaic virus (CaMV)
XX
RA Pauli S, Rothnie HM, Chen G, He X, Hohn T.
RT The cauliflower mosaic virus 35S promoter extends into the
RT transcribed region.
RL J Virol. 78: 12120-12128.(2004)
RD PubMed: 15507598
XX
SQ
TCTCTCTCT
//
ID CURECORECR
XX
AC S000493
XX
DT 11-April-2006 (last modified) kehi
XX
DE GTAC is the core of a CuRE (copper-response element) found in
DE Cyc6 and Cpx1 genes in Chlamydomonas; Also involved in
DE oxygen-response of these genes; For CuRE, see Quin and Merchant,
DE 1995;
XX
KW copper; oxygen; hypoxic;
XX
OS Chlamydomonas reinhardtii
XX
RA Quinn JM, Barraco P, Eriksson M, Merchant S.
RT Coordinate copper- and oxygen-responsive Cyc6 and Cpx1 expression
RT in Chlamydomonas is mediated by the same element.
RL J Biol Chem. 275: 6080-6089 (2000).
RD PubMed: 10692397
XX
RA Quinn JM, Eriksson M, Moseley JL, Merchant S.
RT Oxygen deficiency responsive gene expression in Chlamydomonas
RT reinhardtii through a copper-sensing signal transduction
RT pathway.
RL Plant Physiol. 128 :463-471 (2002).
RD PubMed: 11842150
XX
RA Quinn JM, Merchant S.
RT Two copper-responsive elements associated with the Chlamydomonas
RT Cyc6 gene function as targets for transcriptional activators.
RL Plant Cell. 7 :623-628 (1995).
RD PubMed: 7780310
XX
RA Kropat J, Tottey S, Birkenbihl RP, Depege N, Huijser P, Merchant
RA S.
RT A regulator of nutritional copper signaling in Chlamydomonas is
RT an SBP domain protein that recognizes the GTAC core of copper
RT response element.
RL Proc Natl Acad Sci U S A. 102: 18730-18735.(2005)
RD PubMed: 16352720
XX
SQ
GTAC
//
ID CYTOSITECSHPRA
XX
AC S000261
XX
DT 14-Oct-1999 (last modified) kehi
XX
DE 13 bp sequence of unknown function found in cucumber (C.s.)
DE hydroxypyruvate reductase (hprA) gene promoter; Protein binding
DE site; Required for cytokinin responsiveness; See S000260
DE (AS1LIKECSHPRA) found in the same region; Also involved in light
DE responsiveness; see also S000260;
XX
KW cytokinin; as-1; light;
XX
OS cucumber (Cucumis sativus)
XX
RA Jin G, Davey MC, Ertl JR, Chen R, Yu Z, Daniel SG, Becker WM,
RA Chen C
RT Interaction of DNA-binding proteins with the 5'-flanking region
RT of a cytokinin-responsive cucumber hydroxypyruvate reductase
RT gene
RL Plant Mol Biol 38:713-724 (1998)
RD PubMed: 9862489;
XX
SQ
AAGATTGATTGAG
//
ID D1GMAUX28
XX
AC S000328
XX
DT 20-Feb-2002 (last modified) uchi
XX
DE "D1"; DNase I protected sequence found in the soybean (G.m.)
DE auxin responsive gene, Aux28, promoter; D1 and D4 share a very
DE similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively;
DE D1/D4-like sequence were identified in several other
DE auxin-responsive genes; Binding site of GmGT-2 which is the GT-2
DE family of transcription factors; GmGT-2 are down-regulated by
DE light in a phytochrome-dependent manner; See 000331;
XX
KW Auxin; Aux28; GT-2; phytochrome; D1; hypocotyl;
XX
OS soybean (Glycine max)
XX
RA Nagao RT, Goekjian VH, Hong JC, Key JL
RT Identification of protein-binding DNA sequences in an
RT auxin-regulated gene of soybean
RL Plant Mol Biol 21: 1147-1162 (1993)
RD PubMed: 8490133;
XX
RA O'Grady K, Goekjian VH, Naim CJ, Nagao RT, Key JL
RT The transcript abundance of GmGT-2, a new member of the GT-2
RT family of transcription factors from soybean, is down-regulated
RT by light in a phytochrome-dependent manner
RL Plant Mol Biol 47: 367-378 (2001)
RD PubMed: 11587508;
XX
SQ
ACAGTTACTA
//
ID D2GMAUX28
XX
AC S000329
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "D2"; DNase I protected sequence found in the soybean (G.m.)
DE auxin responsive gene, Aux28, promoter; Located between -703 and
DE -716; A/T-rich sequence;
XX
KW Auxin; Aux28;
XX
OS soybean (Glycine max)
XX
RA Nagao RT, Goekjian VH, Hong JC, Key JL
RT Identification of protein-binding DNA sequences in an
RT auxin-regulated gene of soybean
RL Plant Mol Biol 21: 1147-1162 (1993)
RD PubMed: 8490133;
XX
SQ
ATTTATATAAAT
//
ID D3GMAUX28
XX
AC S000330
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "D3"; DNase I protected sequence found in the soybean (G.m.)
DE auxin responsive gene, Aux28, promoter; Located between -750 and
DE -760; A/T-rich sequence;
XX
KW Auxin; Aux28;
XX
OS soybean (Glycine max)
XX
RA Nagao RT, Goekjian VH, Hong JC, Key JL
RT Identification of protein-binding DNA sequences in an
RT auxin-regulated gene of soybean
RL Plant Mol Biol 21: 1147-1162 (1993)
RD PubMed: 8490133;
XX
SQ
TATTTGCTTAA
//
ID D4GMAUX28
XX
AC S000331
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "D4"; DNase I protected sequence found in the soybean (G.m.)
DE auxin responsive gene, Aux28, promoter; D1 and D4 share a very
DE similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively;
DE D1/D4-like sequence were identified in several other
DE auxin-responsive genes; See 000328;
XX
KW Auxin; Aux28;
XX
OS soybean (Glycine max)
XX
RA Nagao RT, Goekjian VH, Hong JC, Key JL
RT Identification of protein-binding DNA sequences in an
RT auxin-regulated gene of soybean
RL Plant Mol Biol 21: 1147-1162 (1993)
RD PubMed: 8490133;
XX
SQ
TAGTGCTGT
//
ID DE1PSPRA2
XX
AC S000379
XX
DT 21-May-2001 (last modified) uchi
XX
DE "DE1" found in the pea(P.S) pra2 gene promoter; Involved in pra2
DE down-regulation by phytochrome A, phytochrome B and blue-light
DE photoreceptors; pra2 encodes a small GTPase belonging to the
DE YPT/rab family; DF1 has DNA-binding domain specifically binds to
DE two types of DNA sequences, DE1 and GT2;
XX
KW pra2; light response; dark induction; down regulation; DF1;
XX
OS pea (Pisum sativum)
XX
RA Inaba T, Nagano Y, Reid JB, Sasaki Y
RT DE1, a 12-base pair cis-regulatory element sufficient to confer
RT dark-inducible and light down-regulated expression to a minimal
RT promoter in pea
RL J Biol Chem 275: 19723-19727 (2000)
RD PubMed: 10777499;
XX
RA Nagano Y, Inaba T, Furuhashi H, Sasaki Y
RT Trihelix DNA-binding protein with specificities for two distinct
RT cis-elements: both important for light down-regulated and
RT dark-inducible gene expression in higher plants
RL J Biol Chem 276: 22238-22243 (2001)
RD PubMed: 11301338;
XX
SQ
GGATTTTACAGT
//
ID DOFCOREZM
XX
AC S000265
XX
DT 7-Sep-2000 (last modified) seki
XX
DE Core site required for binding of Dof proteins in maize (Z.m.);
DE Dof proteins are DNA binding proteins, with presumably only one
DE zinc finger, and are unique to plants; Four cDNAs encoding Dof
DE proteins, Dof1, Dof2, Dof3 and PBF, have been isolated from
DE maize; PBF is an endosperm specific Dof protein that binds to
DE prolamin box; Maize Dof1 enhances transcription from the
DE promoters of both cytosolic orthophosphate kinase (CyPPDK) and a
DE non-photosynthetic PEPC gene; Maize Dof2 supressed the C4PEPC
DE promoter;
XX
KW Dof; C4PEPC; CyPPDK; PEPC; C4; leaf; shoot;
XX
OS maize (Zea mays)
XX
RA Yanagisawa S, Schmidt RJ
RT Diversity and similarity among recognition sequences of Dof
RT transcription factors
RL Plant J 17:209-214 (1999)
RD PubMed: 10074718;
XX
RA Yanagisawa S
RT Dof1 and Dof2 transcription factors are associated with
RT expression of multiple genes involved in carbon metabolism in
RT maize
RL Plant J 21:281-288 (2000)
RD PubMed: 10758479;
XX
SQ
AAAG
//
ID DPBFCOREDCDC3
XX
AC S000292
XX
DT 7-Sep-2000 (last modified) seki
XX
DE A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3
DE promoter-binding factor-1 and 2) binding core sequence; Found in
DE the carrot (D.c.) Dc3 gene promoter; Dc3 expression is normally
DE embryo-specific, and also can be induced by ABA; The Arabidopsis
DE abscisic acid response gene ABI5 encodes a bZIP transcription
DE factor; abi5 mutant have a pleiotropic defects in ABA response;
DE ABI5 regulates a subset of late embryogenesis-abundant genes;
DE GIA1 (growth-insensitivity to ABA) is identical to ABI5;
XX
KW Dc3; lea class gene; embryo; ABA; DPBF-1, DPBF-2; bZIP; GIA1;
KW ABI5; seed;
XX
OS carrot (Daucus carota); Arabidopsis thaliana;
XX
RA Kim SY, Chung HJ, Thomas TL
RT Isolation of a novel class of bZIP transcription factors that
RT interact with ABA-responsive and embryo-specification elements in
RT the Dc3 promoter using a modified yeast one-hybrid system
RL Plant J 11: 1237-1251 (1997)
RD PubMed: 9225465 GenBank: AF061870, AF001454, AF001453
XX
RA Finkelstein RR, Lynch TJ
RT The Arabidopsis abscisic acid response gene ABI5 encodes a basic
RT leucine zipper transcription factor
RL Plant Cell 12: 599-609 (2000)
RD PubMed: 10760247;
XX
RA Lopez-Molina L, Chua NH
RT A null mutation in a bZIP factor confers ABA-insensitivity in
RT Arabidopsis thaliana
RL Plant Cell Physiol 41: 541-547 (2000)
RD PubMed: 10929936;
XX
SQ
ACACNNG
//
ID DR5GMGH3
XX
AC S000337
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "DR5"; A highly active synthetic auxin response element; Created
DE by site-directed mutations in a natural composite AuxRE found in
DE the soybean GH3 promoter; The DR5 showed greater auxin
DE responsiveness; Binding site of ARF1; See S000270;
XX
KW Aux/IAA; DR5; Auxin; ARF1; AUXRE;
XX
OS Soybean (Glycine max)
XX
RA Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ
RT Aux/IAA proteins repress expression of reporter genes containing
RT natural and highly active synthetic auxin response elements
RL Plant Cell 9: 1963-1971 (1997)
RD PubMed: 9401121;
XX
SQ
CCTTTTGTCTC
//
ID DRE1COREZMRAB17
XX
AC S000401
XX
DT 27-Aug-2002 (last modified) uchi
XX
DE "DRE1" core found in maize (Z.M.) rab17 gene promoter; "DRE1" was
DE protected, in in vivo footprinting, by a protein in embryos
DE specifically, but in leaves, was protected when was treated with
DE ABA and drought; rab17 is expressed during late embryogenesis,
DE and is induced by ABA; See S000150, S000200 and S000402;
XX
KW rab17; ABA; drought response;
XX
OS maize (Zea mays)
XX
RA Busk PK, Jensen AB, Pages M
RT Regulatory elements in vivo in the promoter of the abscisic acid
RT responsive gene rab17 from maize
RL Plant J. 11: 1285-1295 (1997)
RD PubMed: 9225468;
XX
RA Kizis D, Pages M
RT Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17
RT regulation through the drought-responsive element in an
RT ABA-dependent pathway
RL Plant J. 30 :679-689 (2002)
RD PubMed: 12061899;
XX
SQ
ACCGAGA
//
ID DRE2COREZMRAB17
XX
AC S000402
XX
DT 03-Jun-2003 (last modified) kehi
XX
DE "DRE2" core found in maize (Z.M.) rab17 gene promoter; "DBF1" and
DE "DBF2" bound to "DRE2"; rab17 is expressed during late
DE embryogenesis, and is induced by ABA; See S000150, S000200 and
DE S000401;
XX
KW rab17; ABA; drought response; DBF1; DBF2;
XX
OS maize (Zea mays)
XX
RA Busk PK, Jensen AB, Pages M
RT Regulatory elements in vivo in the promoter of the abscisic acid
RT responsive gene rab17 from maize
RL Plant J. 11: 1285-1295 (1997)
RD PubMed: 9225468;
XX
RA Kizis D, Pages M
RT Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17
RT regulation through the drought-responsive element in an
RT ABA-dependent pathway
RL Plant J. 30 :679-689 (2002)
RD PubMed: 12061899;
XX
RA Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S,
RA Seki M, Shinozaki K, Yamaguchi-Shinozaki K.
RT OsDREB genes in rice, Oryza sativa L., encode transcription
RT activators that function in drought-, high-salt- and
RT cold-responsive gene expression.
RL Plant J. 33: 751-763 (2003)
RD PubMed: 12609047;
XX
SQ
ACCGAC
//
ID DRECRTCOREAT
XX
AC S000418
XX
DT 30-January-2006 (last modified) kehi
XX
DE Core motif of DRE/CRT (dehydration-responsive element/C-repeat)
DE cis-acting element found in many genes in Arabidopsis and in
DE rice; R=G/A; Os DREB1A bound to GCCGAC more preferentially than
DE to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC
DE efficiently; See S000402 (ACCGAC); Maize ZmDREB1A bound to DRE
DE (Qin et al. 2004); HaDREB2 in Helianthus annuus
DE (sunflower)(Diaz-Martin et al. 2005); HaDREB2 physically interact
DE with HaHSFA9 in vitro (Diaz-Martin et al. 2005);
XX
KW DRE/CRT; drought; high-light; cold; DREB; DREB1; DREB2; CBF;
XX
OS Oryza sativa (rice); Zea mays (maize); Helianthus annuus
OS (sunflower);
XX
RA Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S,
RA Seki M, Shinozaki K, Yamaguchi-Shinozaki K.
RT OsDREB genes in rice, Oryza sativa L., encode transcription
RT activators that function in drought-, high-salt- and
RT cold-responsive gene expression.
RL Plant J. 33: 751-763 (2003)
RD PubMed: 12609047;
XX
RA Qin F, Sakuma Y, Li J, Liu Q, Li YQ, Shinozaki K,
RA Yamaguchi-Shinozaki K.
RT Cloning and functional analysis of a novel DREB1/CBF
RT transcription factor involved in cold-responsive gene expression
RT in Zea mays L.
RL Plant Cell Physiol. 45: 1042-1052 (2004).
RD PubMed: 15356330
XX
RA Diaz-Martin J, Almoguera C, Prieto-Dapena P, Espinosa JM, Jordano
RA J
RT Functional Interaction between Two Transcription Factors Involved
RT in the Developmental Regulation of a Small Heat Stress Protein
RT Gene Promoter
RL Plant Physiology, 139: 1483-1494 (2005)
RD PubMed: 16244139
XX
RA Suzuki M, Ketterling MG, McCarty DR.
RT Quantitative statistical analysis of cis-regulatory sequences in
RT ABA/VP1- and CBF/DREB1-regulated genes of Arabidopsis.
RL Plant Physiol.139: 437-447 (2005)
RC in silico
RD PubMed: 16113229
XX
RA Skinner JS, von Zitzewitz J, Szucs P, Marquez-Cedillo L,
RA Filichkin T, Amundsen K, Stockinger EJ, Thomashow MF, Chen TH,
RA Hayes PM.
RT Structural, functional, and phylogenetic characterization of a
RT large CBF gene family in barley.
RL Plant Mol Biol. 59: 533-551 (2005)
RD PubMed: 16244905
XX
SQ
RCCGAC
//
ID DREDR1ATRD29AB
XX
AC S000152
XX
DT 23-June-2006 (last modified) kehi
XX
DE Related to responsiveness to drought, low-temperature or
DE high-salt stress; See S000153, S000157; Binding site of DREB1 and
DE DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding
DE factor); Overexpression of DREB1A activated the expression of
DE stress tolerance genes; CBF1 overexpression induces COR genes and
DE enhances freezing tolerance; Heterologous CBF1 expression
DE enhances oxidative stresses tolerance; DRE and ABRE are
DE interdependent in the ABA-responsive expression of the rd29A in
DE Arabidopsis;
XX
KW DRE; drought; water stress; oxidative stress; low temperature;
KW high salt; stress; LRE; DREB; C-repeat; CBF1; AP2; cold;
KW dehydration; CRT; leaf; shoot;
XX
OS Arabidopsis thaliana; Populus spp.;
XX
RA Kasuga M, Liu Q, Miura S, Yamaguchi-Shinozaki K, Shinozaki K
RT Improving plant drought, salt, and freezing tolerance by gene
RT transfer of a single stress-inducible transcription factor
RL Nat Biotechnol 17: 287-291 (1999)
RD PubMed: 10096298;
XX
RA Suzuki M, Ketterling MG, McCarty DR.
RT Quantitative statistical analysis of cis-regulatory sequences in
RT ABA/VP1- and CBF/DREB1-regulated genes of Arabidopsis.
RL Plant Physiol.139: 437-447 (2005)
RC in silico
RD PubMed: 16113229
XX
RA Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe
RA H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K.
RT Interaction between two cis-acting elements, ABRE and DRE, in
RT ABA-dependent expression of Arabidopsis rd29A gene in response to
RT dehydration and high-salinity stresses.
RL Plant J. 34: 137-148 (2003)
RD PubMed: 12694590;
XX
RA Benedict C, Skinner JS, Meng R, Chang Y, Bhalerao R, Huner NPA,
RA Finn CE, Chen THH, Hurry V
RT The CBF1-dependent low temperature signalling pathway, regulon
RT and increase in freeze tolerance are conserved in Populus spp.
RL Plant, Cell and Environment 29:1259-1272 (2006)
XX
RA Pandey GK, Grant JJ, Cheong YH, Kim BG, Li L, Luan S.
RT ABR1, an APETALA2-Domain Transcription Factor That Functions as a
RT Repressor of ABA Response in Arabidopsis.
RL Plant Physiol. 139: 1185-1193 (2005)
RD PubMed: 16227468
XX
RA Nakashima K, Shinwari ZK, Sakuma Y, Seki M, Miura S, Shinozaki K,
RA Yamaguchi-Shinozaki K
RT Organization and expression of two Arabidopsis DREB2 genes
RT encoding DRE-binding proteins involved in dehydration- and
RT high-salinity-responsive gene expression
RL Plant Mol Biol 42: 657-665 (2000)
RD PubMed: 10809011;
XX
RA Hsieh TH, Lee JT, Yang PT, Chiu LH, Charng YY, Wang YC, Chan MT
RT Heterology expression of the Arabidopsis C-repeat/dehydration
RT response element binding factor 1 gene confers elevated tolerance
RT to chilling and oxidative stresses in transgenic tomato
RL Plant Physiol. 129: 1086-1094 (2002)
RD PubMed: 12114563;
XX
SQ
TACCGACAT
//
ID E2F1OSPCNA
XX
AC S000396
XX
DT 21-May-2002 (last modified) uchi
XX
DE "re2f-1" found in the promoter of rice PCNA gene; Located between
DE -142 and -135; "te2f-1" found in the promote of Tobacco PCBA
DE gene; Located between -122 and -115; Binding site of OsE2F1 and
DE OsE2F2; Involved in transcriptional activation in actively
DE dividing cells and tissue;
XX
KW E2F; PCNA; meristematic tissue; cell cycle;
XX
OS rice (Oryza sativa); tobacco (Nicotiana tabacum)
XX
RA Kosugi S, Ohashi Y
RT E2F sites that can interact with E2F proteins cloned from rice
RT are required for meristematic tissue-specific expression of rice
RT and tobacco proliferating cell nuclear antigen promoters
RL Plant J 29: 45-59 (2002)
RD PubMed: 12060226;
XX
SQ
GCGGGAAA
//
ID E2FANTRNR
XX
AC S000366
XX
DT 23-June-2006 (last modified) kehi
XX
DE "E2Fa element" found in the tobacco (N.t.) RNR (Ribonucleotide
DE reductase) gene promoter and in the Arabidopsis thaliana (A.t.)
DE CDC6 gene promoter; Binding site of tobacco and Arabidopsis E2F;
DE Involved in upregulation of the promoter at G1/S transition; See
DE S000367;
XX
KW E2Fa; RNR; G1/S transition; CDC6; Cell-division; Cell cycle;
KW S-phase; cell suspension culture
XX
OS tobacco (Nicotiana tabacum); Arabidopsis thaliana;
XX
RA Chaboute ME, Clement B, Sekine M, Philipps G, Chaubet-Gigot N
RT Cell cycle regulation of the tobacco ribonucleotide reductase
RT small subunit gene is mediated by E2F-like elements
RL Plant Cell 12: 1987-2000 (2000)
RD PubMed: 11041892;
XX
RA de Jager SM, Menges M, Bauer UM, Murra JA
RT Arabidopsis E2F1 binds a sequence present in the promoter of
RT S-phase-regulated gene AtCDC6 and is a member of a multigene
RT family with differential activities
RL Plant Mol Biol 47: 555-568 (2001)
RD PubMed: 11669580;
XX
RA Sozzani R, Maggio C, Varotto S, Canova S, Bergounioux C, Albani
RA D, Cella R
RT Interplay between Arabidopsis Activating Factors E2Fb and E2Fa in
RT Cell Cycle Progression and Development.
RL Plant Physiol. 140: 1355-1366 (2006)
XX
SQ
TTTCCCGC
//
ID E2FAT
XX
AC S000417
XX
DT 03-Jun-2003 (last modified) kehi
XX
DE "E2F-binding site" found in many potential E2F target genes; most
DE potential E2F targets identified in silico show a cell
DE cycle-regulated expression; Y=T/C; see S000366;
XX
KW E2F; cell cycle;
XX
OS Arabidopsis thaliana
XX
RA Ramirez-Parra E, Frundt C, Gutierrez C.
RT A genome-wide identification of E2F-regulated genes in
RT Arabidopsis.
RL Plant J. 33: 801-811 (2003)
RD PubMed: 12609051;
XX
SQ
TYTCCCGCC
//
ID E2FBNTRNR
XX
AC S000367
XX
DT 29-November-2004 (last modified) kehi
XX
DE "E2Fb" found in the tobacco (N.t.) RNR (Ribonucleotide reductase)
DE gene promoter; Binding site of tobacco E2F; Involved in
DE upregulation of the promoter at G1/S transition; See S000366;
DE "dE2F (distal reverse E2F element)" important for regulating
DE specific RNR1a gene expression in respsonse to UV-C irradiation;
DE See S000455;
XX
KW E2Fb; RNR; G1/S transition; dE2F; UV-C; ceel cycle;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Chaboute ME, Clement B, Sekine M, Philipps G, Chaubet-Gigot N
RT Cell cycle regulation of the tobacco ribonucleotide reductase
RT small subunit gene is mediated by E2F-like elements
RL Plant Cell 12: 1987-2000 (2000)
RD PubMed: 11041892;
XX
RA Lincker F, Philipps G, Chaboute ME.
RT UV-C response of the ribonucleotide reductase large subunit
RT involves both E2F-mediated gene transcriptional regulation and
RT protein subcellular relocalization in tobacco cells.
RL Nucleic Acids Res. 32: 1430-1438. (2004).
RD PubMed: 14990748
XX
SQ
GCGGCAAA
//
ID E2FCONSENSUS
XX
AC S000476
XX
DT 05-November-2005 (last modified) kehi
XX
DE "E2F consensus sequence" of all different E2F-DP-binding motifs
DE that were experimentally verified in plants (Vandepoele et al.,
DE 2005); See also S000417, S000397, S000396, S000367, S000366;
DE W=A/T; S=C/G;
XX
KW E2F
XX
OS Arabidopsis thaliana; Nicotiana tabacum (tobacco); Oryza sativa
OS (rice); Nicotiana benthamiana;
XX
RA Vandepoele K, Vlieghe K, Florquin K, Hennig L, Beemster GT,
RA Gruissem W, Van de Peer Y, Inze D, De Veylder L.
RT Genome-wide identification of potential plant E2F target genes.
RL Plant Physiol.139: 316-328. (2005)
RD PubMed: 16126853
XX
SQ
WTTSSCSS
//
ID EBOXBNNAPA
XX
AC S000144
XX
DT 02-August-2006 (last modified) kehi
XX
DE E-box of napA storage-protein gene of Brassica napus (B.n.); See
DE S000042 (CACGTGMOTIF); see S000407 (Myc consensus: CANNTG); This
DE sequence is also known as RRE (R response element)(Hartmann et
DE al., 2005);
XX
KW napA; storage protein; ABRE; E-box; seed;
XX
OS Brassica napus;
XX
RA Stalberg K, Ellerstom M, Ezcurra I, Ablov S, Rask L
RT Disruption of an overlapping E-box/ABRE motif abolished high
RT transcription of the napA storage-protein promoter in transgenic
RT Brassica napus seeds.
RL Planta 199:515-519 (1996)
RD PubMed: 8818291;
XX
RA Hartmann U, Sagasser M, Mehrtens F, Stracke R, Weisshaar B.
RT Differential combinatorial interactions of cis-acting elements
RT recognized by R2R3-MYB, BZIP, and BHLH factors control
RT light-responsive and tissue-specific activation of
RT phenylpropanoid biosynthesis genes.
RL Plant Mol Biol. 57: 155-171 (2005).
RD PubMed: 15821875
XX
SQ
CANNTG
//
ID EECCRCAH1
XX
AC S000494
XX
DT 24-April-2006 (last modified) kehi
XX
DE "EEC"; Consensus motif of the two enhancer elements, EE-1 and
DE EE-2, both found in the promoter region of the Chlamydomonas Cah1
DE (encoding a periplasmic carbonic anhydrase); Binding site of Myb
DE transcription factor LCR1 (see Yoshioka et al, 2004); N=A/G/C/T;
XX
KW low-CO2;
XX
OS Chlamydomonas reinhardtii
XX
RA Kucho K, Yoshioka S, Taniguchi F, Ohyama K, Fukuzawa H.
RT Cis-acting elements and DNA-binding proteins involved in
RT CO2-responsive transcriptional activation of Cah1 encoding a
RT periplasmic carbonic anhydrase in Chlamydomonas reinhardtii.
RL Plant Physiol. 133: 783-793 (2003).
RD PubMed: 14555782
XX
RA Yoshioka S, Taniguchi F, Miura K, Inoue T, Yamano T, Fukuzawa H.
RT The novel Myb transcription factor LCR1 regulates the
RT CO2-responsive gene Cah1, encoding a periplasmic carbonic
RT anhydrase in Chlamydomonas reinhardtii.
RL Plant Cell. 16: 1466-1477.(2004)
RD PubMed: 15155888
XX
SQ
GANTTNC
//
ID EIN3ATERF1
XX
AC S000332
XX
DT 7-Sep-2000 (last modified) seki
XX
DE EIN3 (Ethylene-insensitive 3) binding site found in the promoter
DE of the Arabidopsis (A.t.) ERF1 (Ethylene-Response-Factor 1); EIN3
DE recognizes its target as a homodimer; EIN3 is necessary and
DE sufficient for ERF1 expression; Consititutive expression of ERF1
DE results in the activation of a variety of ethylene response genes
DE and phenotype; ERF1 is a GCC-box binding site; ERF1 acts
DE downstream of EIN3;
XX
KW EIN3; ERF1; Ethylene;
XX
OS Arabidopsis thaliana
XX
RA Solano R, Stepanova A, Chao Q, Ecker JR
RT Nuclear events in ethylene signaling: a transcriptional cascade
RT mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1
RL Genes Dev. 12: 3703-3714 (1998)
RD PubMed: 9851977; GenBank: AF076277; AF076278;
XX
SQ
GGATTCAAGGGGCATGTATCTTGAATCC
//
ID ELEMENT1GMLBC3
XX
AC S000319
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "Element 1" found in the promoter of soybean (G.m.)
DE leghaemoglobin lbc3 gene; Binding site of nuclear extract from
DE soybean nodules; Located at -223 to -246; Element 1 and Element 2
DE (S000320) bind to the same nodule specific factor; Element 1 and
DE Element 2 share a common motif; See S000320;
XX
KW nodule; leghaemoglobin; lbc3; root;
XX
OS Soybean (Glycine max)
XX
RA Jensen EO, Marcker KA, Schell J, de Bruijn J
RT Interaction of a nodule specific, trans-acting factor with
RT distinct DNA elements in the soybean leghaemoglobin lbc3 5'
RT upstream region
RL EMBO J 7:1265-1271 (1988)
XX
SQ
GATATATTAATATTTTATTTTATA
//
ID ELEMENT2GMLBC3
XX
AC S000320
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "Element 2" found in the promoter of soybean (G.m.)
DE leghaemoglobin lbc3 gene; Binding site of nuclear extract from
DE soybean nodules; Located at -161 to -176; Element 1(S000319) and
DE Element 2 (S000320) bind to the same nodule specific factor;
DE Element 2 is highly conserved in other soybean lb gene promoter
DE regions; See S000319;
XX
KW nodule; leghaemoglobin; lbc3; root;
XX
OS Soybean (Glycine max)
XX
RA Jensen EO, Marcker KA, Schell J, de Bruijn J
RT Interaction of a nodule specific, trans-acting factor with
RT distinct DNA elements in the soybean leghaemoglobin lbc3 5'
RT upstream region
RL EMBO J 7:1265-1271 (1988)
XX
SQ
CTTAAATTATTTATTT
//
ID ELRE1PCPAL1
XX
AC S000306
XX
DT 10-Feb-2000 (last modified) seki
XX
DE One of two elicitor (ELRE) and light response elements (LRE)
DE found in the parsley (P.c.) phenylalanine ammonia-lyase (PAL-1)
DE gene promoter; Involved in UV light and elicitor responsiveness;
DE Conserved in several elicitor or light-responsive genes; See
DE S000307;
XX
KW phenylalanine ammonia-lyase (PAL); UV; elicitor; light; leaf;
KW shoot;
XX
OS parsley (Petroselinum crispum)
XX
RA Lois R, Dietrich A, Hahlbrok K, Schulz W
RT A phenylalanine ammonia-lyase gene from parsley: structure,
RT regulation and identification of elicitor and light responsive
RT cis-acting elements
RL EMBO J 8: 1641-1648 (1989)
RD PubMed: 2767049; GenBank: X15473, X16772
XX
SQ
CTCCAACAAACCCCTTC
//
ID ELRE2PCPAL1
XX
AC S000307
XX
DT 10-Feb-2000 (last modified) seki
XX
DE One of two elicitor (ELRE) and light response elements (LRE)
DE found in the parsley (P.c.) phenylalanine ammonia-lyase (PAL-1)
DE gene promoter; Involved in UV light and elicitor responsiveness;
DE Conserved in several elicitor or light-responsive genes; See
DE S000306;
XX
KW phenylalanine ammonia-lyase (PAL); UV; elicitor; light; leaf;
KW shoot;
XX
OS parsley (Petroselinum crispum)
XX
RA Lois R, Dietrich A, Hahlbrok K, Schulz W
RT A phenylalanine ammonia-lyase gene from parsley: structure,
RT regulation and identification of elicitor and light responsive
RT cis-acting elements
RL EMBO J 8: 1641-1648 (1989)
RD PubMed: 2767049; GenBank: X15473, X16772
XX
SQ
ATTCTCACCTACCA
//
ID ELRECOREPCRP1
XX
AC S000142
XX
DT 22-June-2006 (last modified) kehi
XX
DE ElRE (Elicitor Responsive Element) core of parsley (P.c.) PR1
DE genes; consensus sequence of elements W1 and W2 of parsley PR1-1
DE and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1
DE and WRKY2, respectively; ERE; "WA box"; One of the W boxes found
DE in the Parsley (P.c.) WRKY1 gene promoter; Required for elicitor
DE responsiveness; See S000310; "WC box" WB box (S000310) and WC box
DE constitute a palindrome; WRKY1 protein binding site; W-box found
DE in thioredoxin h5 gene in Arabidopsis (Laloi et al.);
XX
KW Elicitor; PR1; ElRE; ELRE; ERE; W box; WRKY1; palindrome;
KW salicylic acid; TMV;
XX
OS Petroselinum crispum (parsley); Nicotiana tabacum (tobacco);
XX
RA Rushton PJ, Torres JT, Parniske M, Wernert P, Hahlbrock K,
RA Somssich IE
RT Interaction of elicitor-induced DNA-binding proteins with
RT elicitor response elements in the promoters of parsley PR1
RT genes.
RL EMBO J 15:5690-5700 (1996)
RD PubMed: 8896462; GenBank: U48862, U48863;
XX
RA Eulgem T, Rushton PJ, Schmelzer E, Hahlbrock K, Somssich IE
RT Early nuclear events in plant defence signalling: rapid gene
RT activation by WRKY transcription factors
RL EMBO J 18: 4689-4699 (1999)
RD PubMed: 10469648;
XX
RA Eulgem T, Rushton PJ, Robatzek S, Somssich IE
RT The WRKY superfamily of plant transcription factors
RL Trends Plant Sci 5: 199-206 (2000)
RC Review
RD PubMed: 10785665;
XX
RA Chen C, Chen Z
RT Isolation and characterization of two pathogen- and salicylic
RT acid-induced genes encoding WRKY DNA-binding proteins from
RT tobacco
RL Plant Mol Biol 42: 387-396 (2000)
RD PubMed: 10794538;
XX
RA Rushton PJ, Reinstadler A, Lipka V, Lippok B, Somssich IE
RT Synthetic plant promoters containing defined regulatory elements
RT provide novel insights into pathogen- and wound-induced
RT signaling
RL Plant Cell. 14: 749-762 (2002)
RD PubMed: 11971132;
XX
RA Laloi C, Mestres-Ortega D, Marco Y, Meyer Y, Reichheld JP.
RT The Arabidopsis cytosolic thioredoxin h5 gene induction by
RT oxidative stress and its W-box-mediated response to pathogen
RT elicitor.
RL Plant Physiol. 134:1006-1016 (2004).
RD PubMed: 14976236
XX
SQ
TTGACC
//
ID ELRENTCHN50
XX
AC S000155
XX
DT 17-May-1998 (last modified) kehi
XX
DE Elicitor-responsive element (ElRE); Found in tobacco (N. t.)
DE basic class I chitinase gene (CHN50);
XX
KW ELRE; elicitor; chitinase;
XX
OS tobacco (Nicotiana tabacum);
XX
RA Fukuda Y
RT Interaction of tobacco nuclear protein with an
RT elicitor-responsive element in the promoter of a basic class I
RT chitinase gene.
RL Plant Mol Biol 34:81-87 (1997)
RD PubMed: 9177314;
XX
SQ
GGTCANNNAGTC
//
ID EMBP1TAEM
XX
AC S000119
XX
DT 16-Feb-2001 (last modified) seki
XX
DE Binding site of trans-acting factor EMBP-1; wheat (T.a.) Em gene;
DE See S000015; Binding site of ABFs; ABFs (ABRE binding factors)
DE were isolated from Arabidopsis by a yeast one-hybrid screening
DE system; Expression ABFs is induced by ABA and various stress
DE treatment; ABFs belongs to a distinct subfamily of bZIP proteins;
DE Involved in ABA-mediated stress-signaling pathway;
XX
KW EMBP-1; Em; ABA; ABF; ABRE; bZIP; seed;
XX
OS wheat (Triticum aestivum); Arabidopsis thaliana;
XX
RA Guiltinan MJ, Marcotte WR Jr, Quatrano RS
RT A plant leucine zipper protein that recognizes an abscisic acid
RT response element.
RL Science 250:267-270 (1990)
RD PubMed: 2145628; GenBank: M62893, M63999;
XX
RA Vasil V, Marcotte Jr. WR, Rosenkrans L, Cocciolone SM, Vasil IK,
RA Quatrano RS, McCarty DR
RT Overlap of viviparous1 (VP1) and abscisic acid response elements
RT in the EM promoter: G-Box elements are sufficient but not
RT necessary for VP1 transactivation
RL Plant Cell 7: 1511-1518 (1995)
RD PubMed: 8589631
XX
RA Choi H, Hong J, Ha J, Kang J, Kim SY
RT ABFs, a family of ABA-responsive element binding factors
RL J Biol Chem 275: 1723-1730 (2000)
RD PubMed: 10636868;
XX
SQ
CACGTGGC
//
ID EMHVCHORD
XX
AC S000452
XX
DT 29-November-2004 (last modified) kehi
XX
DE "Endosperm motif (EM)" found in the promoter of barley (H.v.)
DE c-hordein gene; Involved in the nitrogen response of c-hordein
DE promoter;
XX
KW EM; endosperm; hordein; nitrogen;
XX
OS Hordeum vulgare (barley)
XX
RA Muller M, Knudsen S.
RT The nitrogen response of a barley C-hordein promoter is
RT controlled by positive and negative regulation of the GCN4 and
RT endosperm box.
RL Plant J. 4: 343-355 (1993).
RD PubMed: 8220485
XX
SQ
TGTAAAGT
//
ID EREGCC
XX
AC S000036
XX
DT 03-Jun-2003 (last modified) kehi
XX
DE "GCC box" in "ERE (ethylene responsive element)";
DE Ethylene-responsive region of tobacco (N.t.) chitinase gene
DE contains two copies of the GCC-box; ERF2 and ERF4 enhanced the
DE GCC box-mediated transcription; ERF3 reduced the transcription of
DE the reporter gene in tobacco protoplasts; Binding site of AtEBP;
DE Pti4/5/6 proteins from tomato which belong to the ERF family
DE activate the expression of "GCC box"-containing PR genes; ERF3
DE was found to interact with NtUBC2, a ubiquitin-conjugating
DE enzyme;
XX
KW Ethylene; EREBP; GCC box; G-box; CHN; ERE; ERF; xylanase; TvX;
KW OBF; bZIP; EBP; pathogen; ocs; leaf; shoot; Pti4/5/6; ubiquitin;
KW UBC2;
XX
OS tobacco (Nicotiana tabacum); Arabidopsis thaliana;
XX
RA Koyama T, Okada T, Kitajima S, Ohme-Takagi M, Shinshi H, Sato F.
RT Isolation of tobacco ubiquitin-conjugating enzyme cDNA in a yeast
RT two-hybrid system with tobacco ERF3 as bait and its
RT characterization of specific interaction.
RL J Exp Bot. 54: 1175-1181 (2003)
RD PubMed: 12654868;
XX
RA Gu YQ, Wildermuth MC, Chakravarthy S, Loh YT, Yang C, He X, Han
RA Y, Martin GB
RT Tomato transcription factors pti4, pti5, and pti6 activate
RT defense responses when expressed in Arabidopsis
RL Plant Cell 14: 817-831 (2002)
RD PubMed: 11971137;
XX
RA Yamamoto S, Suzuki K, Shinshi H
RT Elicitor-responsive, ethylene-independent activation of GCC
RT box-mediated transcription that is regulated by both protein
RT phosphorylation and dephosphorylaton in cultured tobacco cells
RL Plant J 20: 571-579 (1999)
RD PubMed: 10652129;
XX
RA Ohta M, Ohme-Takagi M, Shinshi H
RT Three ethylene-responsive transcription factors in tobacco with
RT distinct transactivation functions
RL Plant J 22:29-38 (2000)
RD PubMed: 10792818;
XX
RA Ohme-Takagi M, Shinshi H
RT Ethylene-inducible DNA binding proteins that interact with an
RT ethylene-responsive element
RL Plant Cell 7: 173-182 (1995)
RD PubMed: 7756828;
XX
RA Buttner M, Singh KB
RT Arabidopsis thaliana ethylene-responsive element binding protein
RT (AtEBP), an ethylene-inducible, GCC box DNA-binding protein
RT interacts with an ocs element binding protein
RL Proc Natl Acad Sci USA 94: 5961-5966 (1997)
RD PubMed: 9159183; GenBank: Y09942;
XX
RA Ohme-Takagi M, Suzuki K, Shinshi H
RT Regulation of Ethylene-Induced Transcription of Defense Genes
RL Plant Cell Physiol 41: 1187-1192 (2000)
RD PubMed: 11092902;
XX
SQ
TAAGAGCCGCC
//
ID ERELEE4
XX
AC S000037
XX
DT 02-August-2006 (last modified) kehi
XX
DE "ERE (ethylene responsive element)" of tomato (L.e.) E4 and
DE carnation GST1 genes; GST1 is related to senescence; Found in the
DE 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon
DE chilense (Tapia et al.); ERE motifs mediate ethylene-induced
DE activation of the U3 promoter region;
XX
KW Ethylene; E4; GST1; senescence; ERE; fruit;
XX
OS tomato (Lycopersicon esculentum); carnation (Dianthus
OS caryophyllus); Lycopersicon chilense;
XX
RA Itzhaki H, Maxson JM, Woodson WR
RT An ethylene-responsive enhancer element is involved in the
RT senescence-related expression of the carnation
RT glutathione-S-transferase (GSTI) gene.
RL Proc Natl Acad Sci USA 91:8925-8929 (1994)
RD PubMed: 8090746;
XX
RA Montgomery J, Goldman S, Deikman J, Margossian L, Fischer RL
RT Identification of an ethylene-responsive region in the promoter
RT of a fruit ripening gene.
RL Proc Natl Acad Sci USA 90:5939-5943 (1993)
RD PubMed: 8327464;
XX
RA Tapia G, Verdugo I, Yanez M, Ahumada I, Theoduloz C, Cordero C,
RA Poblete F, Gonzalez E, Ruiz-Lara S.
RT Involvement of Ethylene in Stress-Induced Expression of the
RT TLC1.1 Retrotransposon from Lycopersicon chilense Dun.
RL Plant Physiol. 138:2075-2086 (2005)
RD PubMed: 16040666
XX
RA Rawat R, Xu ZF, Yao KM, Chye ML.
RT Identification of cis-elements for ethylene and circadian
RT regulation of the Solanum melongena gene encoding cysteine
RT proteinase.
RL Plant Mol Biol. 57: 629-643 (2005).
RD PubMed: 15988560
XX
SQ
AWTTCAAA
//
ID ESPASGL01
XX
AC S000509
XX
DT 04-January-2007 (last modified) kehi
XX
DE "ESP (endosperm specificity palindrome)" element found in the
DE promoter of oat (A.s.) globulin gene (AsGlo1);
XX
KW endosperm; globulin;
XX
OS Avena sativa (oat)
XX
RA Vickers CE, Xue G, Gresshoff PM.
RT A novel cis-acting element, ESP, contributes to high-level
RT endosperm-specific expression in an oat globulin promoter.
RL Plant Mol Biol. 62:195-214 (2006)
RD PubMed: 16915522
XX
SQ
ACATGTCATCATGT
//
ID EVENINGAT
XX
AC S000385
XX
DT 26-October-2005 (last modified) kehi
XX
DE "Evening element" found 46 times in the promoters of 31 cycling
DE genes in Arabidopsis thaliana (Harmer et al. 2000); Required for
DE circadian control of gene expression; "EE (evening element)
DE motif"; Also found in the promoter of the Solanum melongena gene
DE encoding cysteine protease, and identified as cis-element for its
DE circadian regulation (Rawat et al. 2005);
XX
KW evening; circadian; clock; EE;
XX
OS Arabidopsis thaliana; Solanum melongena;
XX
RA Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang
RA X, Kreps JA, Kay SA
RT Orchestrated transcription of key pathways in Arabidopsis by the
RT circadian clock
RL Science 290: 2110-2113 (2000)
RD PubMed: 11118138;
XX
RA Rawat R, Xu ZF, Yao KM, Chye ML.
RT Identification of cis-elements for ethylene and circadian
RT regulation of the Solanum melongena gene encoding cysteine
RT proteinase.
RL Plant Mol Biol. 57: 629-643 (2005).
RD PubMed: 15988560
XX
SQ
AAAATATCT
//
ID GADOWNAT
XX
AC S000438
XX
DT 01-August-2006 (last modified) kehi
XX
DE Sequence present in 24 genes in the GA-down regulated d1 cluster
DE (106 genes) found in Arabidopsis seed germination; This motif is
DE similar to ABRE (Busk and Pages 1998);
XX
KW Ga; seed; germaination;
XX
OS Arabidopsis thaliana;
XX
RA Ogawa M, Hanada A, Yamauchi Y, Kuwahara A, Kamiya Y, Yamaguchi
RA S.
RT Gibberellin biosynthesis and response during Arabidopsis seed
RT germination.
RL Plant Cell 15: 1591-1604 (2003)
RD PubMed: 12837949;
XX
RA Nakashima K, Fujita Y, Katsura K, Maruyama K, Narusaka Y, Seki M,
RA Shinozaki K, Yamaguchi-Shinozaki K.
RT Transcriptional regulation of ABI3- and ABA-responsive genes
RT including RD29B and RD29A in seeds, germinating embryos, and
RT seedlings of Arabidopsis.
RL Plant Mol Biol. 60: 51-68 (2006).
RD PubMed: 16463099
XX
SQ
ACGTGTC
//
ID GAGA8HVBKN3
XX
AC S000427
XX
DT 29-Sep-2003 (last modified) kehi
XX
DE "GA octodinucleotide repeat" found in intron IV of the barley
DE (H.v.) gene Bkn3; Binding site for GAGA-binding factor BBR; See
DE S000405 (GAGA element in the soy bean Gsa1 gene);
XX
KW GAGA; GBP; BBR;
XX
OS Hordeum vulgare (barley)
XX
RA Santi L, Wang Y, Stile MR, Berendzen K, Wanke D, Roig C, Pozzi C,
RA Muller K, Muller J, Rohde W, Salamini F.
RT The GA octodinucleotide repeat binding factor BBR participates in
RT the transcriptional regulation of the homeobox gene Bkn3.
RL Plant J. 34:813-826 (2003)
RD PubMed: 12795701;
XX
SQ
GAGAGAGAGAGAGAGA
//
ID GAGAGMGSA1
XX
AC S000405
XX
DT 21-Nov-2002 (last modified) uchi
XX
DE "GAGA element" found in the promoter of the heme and chlorophyll
DE synthesis gene Gsa1 in soybean (G.m.); GAGA binding protein (GBP)
DE binds to (GA)n/(CT)n DNA;
XX
KW Dinucleotide repeat; GAGA element; GBP; Gsa1;
XX
OS Glycine max (soybean)
XX
RA Sangwan I, O'Brian MR
RT Identification of a Soybean Protein That Interacts with GAGA
RT Element Dinucleotide Repeat DNA
RL Plant Physiol. 129: 1788-1794 (2002)
RD PubMed: 12177492;
XX
SQ
GAGAGAGAGAGAGAGAGA
//
ID GARE1OSREP1
XX
AC S000419
XX
DT 28-November-2004 (last modified) kehi
XX
DE "Gibberellin-responsive element (GARE)" found in the promoter
DE region of a cystein proteinase (REP-1) gene in rice; See
DE S000020;
XX
KW aleurone; GARE; gibberellin; seed;
XX
OS Oryza sativa (rice)
XX
RA Sutoh K, Yamauchi D.
RT Two cis-acting elements necessary and sufficient for
RT gibberellin-upregulated proteinase expression in rice seeds
RL Plant J. 34: 636-645 (2003)
RD PubMed: 12787245;
XX
SQ
TAACAGA
//
ID GARE2
XX
AC S000165
XX
DT 17-May-1998 (last modified) kehi
XX
DE Putative gibberellin responsive element; Consensus sequence of GA
DE inducible alpha-amylase genes from rice, barley and wheat;
XX
KW gibberellin; GARE; seed;
XX
OS rice (Oryza sativa); barley (Hordeum vulgare); wheat (Triticum
OS aestivum);
XX
RA Huang N, Sutliff TD, Litts JC, Rodriguez RL
RT Classification and characterization of the rice alpha-amylase
RT multigene family.
RL Plant Mol Biol 14:655-668 (1990)
RC Consensus sequence of GA-induced genes
RD PubMed: 2102847; GenBank: X16509;
XX
RA Rogers JC, Rogers SW
RT Definition and functional implications of gibberellin and
RT abscisic acid cis-acting hormone response complexes
RL Plant Cell 4:1443-1451 (1992)
RD PubMed: 1477557;
XX
SQ
RTAACARANTCYGG
//
ID GARE2OSREP1
XX
AC S000420
XX
DT 28-November-2004 (last modified) kehi
XX
DE "Gibberellin-responsive element (GARE)" found in the promoter
DE region of a cystein proteinase (REP-1) gene in rice; See
DE S000020;
XX
KW aleurone; GARE; gibberellin; seed;
XX
OS Oryza sativa (rice)
XX
RA Sutoh K, Yamauchi D.
RT Two cis-acting elements necessary and sufficient for
RT gibberellin-upregulated proteinase expression in rice seeds
RL Plant J. 34: 636-645 (2003)
RD PubMed: 12787245;
XX
SQ
TAACGTA
//
ID GARE4HVEPB1
XX
AC S000297
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "GARE-4" found in the barley (H.v.) EPB-1 (cysteine proteinase)
DE gene promoter; Located between -142 to -156; Required for GA
DE induction; Putative binding site of transcription factor, GAMyB;
DE See S000298;
XX
KW EPB; cysteine proteinase; GA; ABA; GARE; pyrimidine box; seed;
KW aleurone;
XX
OS barley (Hordeum vulgare)
XX
RA Cercos M, Gomez-Cadenas A, Ho THD
RT Hormonal regulation of a cysteine proteinase gene, EPB-1, in
RT barley aleurone layers: cis- and trans-acting elements involved
RT in the co-ordinated gene expression regulated by gibberellins and
RT abscisic acid
RL Plant J 19: 107-118 (1999)
RD PubMed: 10476058
XX
SQ
GTAACAGAATGCTGG
//
ID GAREAT
XX
AC S000439
XX
DT 27-Jan-2004 (last modified) kehi
XX
DE GARE (GA-responsive element); Occurrence of GARE in GA-inducible,
DE GA-responsible, and GA-nonresponsive genes found in Arabidopsis
DE seed germination was 20, 18, and 12%, respectively; see S000181;
XX
KW GARE; GA;
XX
OS Arabidopsis thaliana;
XX
RA Ogawa M, Hanada A, Yamauchi Y, Kuwahara A, Kamiya Y, Yamaguchi
RA S.
RT Gibberellin biosynthesis and response during Arabidopsis seed
RT germination.
RL Plant Cell 15: 1591-1604 (2003)
RD PubMed: 12837949;
XX
SQ
TAACAAR
//
ID GAREHVAMY1
XX
AC S000038
XX
DT 17-May-1998 (last modified) kehi
XX
DE "GARE (gibberellic acid responsive element)" of barley (H.v.)
DE alpha-amylase gene (Amy 1/6-4); GA3;
XX
KW gibberellic acid; GA; GA3; amylase; Amy1/6-4; GARE;
XX
OS barley (Hordeum vulgare)
XX
RA Skriver K, Olsen FL, Rogers JC, Mundy J
RT Cis-acting DNA elements responsive to gibberellin and its
RT antagonist abscisic acid.
RL Proc Natl Acad Sci USA 88:7266-7270 (1991)
RD PubMed: 1831269;
XX
RA Gilmartin PM, Sarokin L, Memelink J, Chua N-H
RT Molecular light switches for plant genes.
RL Plant Cell 2:369-378 (1990)
RD PubMed: 2152164;
XX
SQ
GGCCGATAACAAACTCCGGCC
//
ID GATABOX
XX
AC S000039
XX
DT 01-August-2006 (last modified) kehi
XX
DE "GATA box"; GATA motif in CaMV 35S promoter; Binding with ASF-2;
DE Three GATA box repeats were found in the promoter of Petunia
DE (P.h.) chlorophyll a/b binding protein, Cab22 gene; Required for
DE high level, light regulated, and tissue specific expression;
DE Conserved in the promoter of all LHCII type I Cab genes;
XX
KW ASF-2; GATA box; Cab; chlorophyll a/b binding protein; leaf;
KW shoot;
XX
OS CaMV; Cauliflower mosaic virus; Petunia hybrida (petunia);
OS Arabidopsis thaliana; Oryza sativa (rice);
XX
RA Lam E, Chua NH
RT ASF-2: A factor that binds to the cauliflower mosaic virus 35S
RT promoter and a conserved GATA motif in cab promoters.
RL Plant Cell 1:1147-1156 (1989)
RD PubMed: 2535536;
XX
RA Gilmartin PM, Sarokin L, Memelink J, Chua N-H
RT Molecular light switches for plant genes.
RL Plant Cell 2:369-378 (1990)
RD PubMed: 2152164;
XX
RA Benfey PN, Chua NH
RT The cauliflower mosaic virus 35S promoter: combinatorial
RT regulation of transcription in plants
RL Science 250:959-966 (1990)
XX
RA Gidoni D, Brosio P, Bond-Nutter D, Bedbrook J, Dunsmuir P
RT Novel cis-acting elements in Petunia Cab gene promoters
RL Mol Gen Genet 215: 337-344 (1989)
RD PubMed: 2651885;
XX
RA Teakle GR, Manfield IW, Graham JF, Gilmartin PM
RT Arabidopsis thaliana GATA factors: organisation, expression and
RT DNA-binding characteristics
RL Plant Mol Biol. 50 :43-57 (2002)
RD PubMed: 12139008;
XX
RA Reyes JC, Muro-Pastor MI, Florencio FJ.
RT The GATA family of transcription factors in Arabidopsis and
RT rice.
RL Plant Physiol. 134: 1718-1732 (2004).
RD PubMed: 15084732
XX
RA Rubio-Somoza I, Martinez M, Abraham Z, Diaz I, Carbonero P.
RT Ternary complex formation between HvMYBS3 and other factors
RT involved in transcriptional control in barley seeds.
RL Plant J. 47: 269-281 (2006)
RD PubMed: 16762033
XX
SQ
GATA
//
ID GBOX10NT
XX
AC S000272
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE One of 11 G-box sequences in tobacco (N.t.); Required for
DE high-level constitutive expression in seed, leaf, root, axillary
DE bud, almost all parts of flower buds and pollen;
XX
KW G-box; G-box 10; tetramer; seed; root; leaf; axillary bud;
KW pollen;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Ishige F, Takaichi M, Foster R, Chua NH, Oeda K
RT A G-box motif (GCCACGTGCC) tetramer confers high-level
RT constitutive expression in dicot and monocot plants
RL Plant J 18:443-448 (1999)
XX
SQ
GCCACGTGCC
//
ID GBOXLERBCS
XX
AC S000041
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "G box"; Conserved sequence upstream of light-regulated genes;
DE Sequence found in the promoter region of rbcS of tomato (L.e.)
DE and Arabidopsis; Binding with GBF; M=A/C; See S000345;
XX
KW G box; rbcS; tomato; G-box; leaf; shoot;
XX
OS tomato (Lycopersicon esculentum); Arabidopsis thaliana;
XX
RA Giuliano G, Pichersky E, Malik VS, Timko MP, Scolnik PA, Cashmore
RA AR
RT An evolutionarily conserved protein binding sequence upstream of
RT a plant light-regulated gene.
RL Proc Natl Acad Sci USA 85:7089-7093 (1988)
RD PubMed: 2902624;
XX
RA Donald RGK, Cashmore AR
RT Mutation of either G box or I box sequences profoundly affects
RT expression from the Arabidopsis rbcS-1A promoter.
RL EMBO J 9:1717-1726 (1990)
RD PubMed: 2347304;
XX
RA Vasil V, Marcotte Jr. WR, Rosenkrans L, Cocciolone SM, Vasil IK,
RA Quatrano RS, McCarty DR
RT Overlap of viviparous1 (VP1) and abscisic acid response elements
RT in the EM promoter: G-Box elements are sufficient but not
RT necessary for VP1 transactivation
RL Plant Cell 7: 1511-1518 (1995)
RD PubMed: 8589631
XX
SQ
MCACGTGGC
//
ID GBOXPC
XX
AC S000324
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "G box"; Binding site of parsley (P.c.) cytosolic G-box binding
DE factors (cytosolic GBFs); Cytosolic G-Box binding activity is
DE modulated by light; DNA binding activity of cytosolic GBFs is
DE regulated by cytosolic phosphorylation/dephospholylation
DE activities; Cytosolic GBFs are translocated to the nucleus in a
DE light-regulated manner;
XX
KW G-box; light; cytosolic GBFs; bZIP; leaf; shoot;
XX
OS parsley (Petroselinum crispum)
XX
RA Harter K, Kircher S, Frohnmeyer H, Krenz M, Nagy F, Schafer E
RT Light-regulated modification and nuclear translocation of
RT cytosolic G-box binding factors in parsley
RL Plant Cell 6: 545-559 (1994)
RD PubMed: 8205004;
XX
SQ
ACCACGTGGC
//
ID GBOXRELOSAMY3
XX
AC S000206
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE G box-related element found in Amy3D (amylase) promoter of rice
DE (O.s.); Similar to ABRE;
XX
KW amylase; G box; G box-like element;
XX
OS rice (Oryza sativa);
XX
RA Hwang YS, Karrer EE, Thomas BR, Chen L, Rodriguez RL
RT Three cis-elements required for rice alpha-amylase Amy3D
RT expression during sugar starvation
RL Plant Mol Biol 36:331-341 (1998)
RD PubMed: 9484474;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
CTACGTGGCCA
//
ID GBOXSORBCS1
XX
AC S000380
XX
DT 23-Aug-2001 (last modified) uchi
XX
DE "G-box" found in the spinach(S.O.) RBCS-1 gene promoter; Located
DE between -219 and -212; G-box trimer confers relatively high level
DE expression in roots;
XX
KW RBCS-1; G-box; root;
XX
OS spinach (Spinacia oleracea)
XX
RA Lubberstedt T, Bolle CE, Sopory S, Flieger K, Herrmann RG,
RA Oelmuller R
RT Promoters from genes for plastid proteins possess regions with
RT different sensitivities toward red and blue light
RL Plant Physiol 104: 997-1006 (1994)
RD PubMed: 8165263;
XX
SQ
TCCACGTGGT
//
ID GCAACREPEATZMZEIN
XX
AC S000027
XX
DT 17-May-1998 (last modified) kehi
XX
DE "GCAAC repeat" found in the 22bp recognition site for beta-1
DE factor in the promoter of beta-zein (prolamin type) gene of maize
DE (Z.m.); GCAAC is the core recognition sequence of the protein
DE encoded by the retroviral oncogene myb (Biedenkapp et al. Nature
DE 335:835-837 (1988));
XX
KW beta-zein; GCAAC; repeat; myb; seed; endosperm;
XX
OS maize (Zea mays)
XX
RA So J-S, Larkins BA
RT Binding of an endosperm-specific nuclear protein to a maize
RT beta-zein gene correlates with zein transcriptional activity
RL Plant Mol Biol 17:309-319 (1991)
RD PubMed: 1883992;
XX
SQ
GCAACGCAAC
//
ID GCBP2ZMGAPC4
XX
AC S000351
XX
DT 16-Feb-2001 (last modified) seki
XX
DE Binding site of tobacco nuclear factor (GCBP-2) found in the
DE maize (Z.m.) GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4)
DE gene promoter; Located between -293 and -285; See S000350;
XX
KW anaerobic; GapC4; GCBP-2;
XX
OS maize (Zea mays)
XX
RA Geffers R, Cerff R, Hehl R
RT Anaerobiosis-specific interaction of tobacco nuclear factors with
RT cis-regulatory sequences in the maize GapC4 promoter
RL Plant Mol Biol 43: 11-21 (2000)
RD PubMed: 10949370;
XX
SQ
GTGGGCCCG
//
ID GCCCORE
XX
AC S000430
XX
DT 28-Jan-2004 (last modified) kehi
XX
DE Core of GCC-box found in many pathogen-responsive genes such as
DE PDF1.2, Thi2.1, and PR4; Has been shown to function as
DE ethylene-responsive element; See S000036, S000232, S000332;
DE Appears to play important roles in regulating
DE jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates
DE defence-related gene expression via GCC box and non-GCC box cis
DE elements (Myb1 (GTTAGTT) and G-box(CACGTG));
XX
KW GCC; GCC-box; ERE; JA; Pti4; ERF; PR;
XX
OS Arabidopsis thaliana; Lycopersicon esculentum (tomato);
XX
RA Brown RL, Kazan K, McGrath KC, Maclean DJ, Manners JM.
RT A role for the GCC-box in jasmonate-mediated activation of the
RT PDF1.2 gene of Arabidopsis.
RL Plant Physiol. 132:1020-1032 (2003)
RD PubMed: 12805630;
XX
RA Chakravarthy S, Tuori RP, DAscenzo MD, Fobert PR, Despres C,
RA Martin GB
RT The tomato transcription factor Pti4 regulates defence-related
RT gene expression via GCC box and non-GCC box cis elements
RL Plant Cell 15: 3033-3050 (2003)
RD PubMed: 14630974;
XX
SQ
GCCGCC
//
ID GCN4OSGLUB1
XX
AC S000277
XX
DT 21-May-2002 (last modified) uchi
XX
DE "GCN4 motif" found in GluB-1 gene in rice (O.s.); Required for
DE endosperm-specific expression; See S000276; AACA and ACGT motifs
DE was found sufficient to confer a detectable level of endosperm
DE expression; See S000353, S000354; This motif is the recognition
DE site for a basic leucine zipper transcription factor that belongs
DE to the group of maize Opaque-2 (O2)-like proteins; Although all
DE the RISBZ proteins are able to interact with the GCN4 motif, only
DE RISBZ1 is capable of activating the gene expression;
XX
KW GluB-1; glutelin; endosperm; seed; storage protein; GCN4 motif;
KW RISBZ proteins; O2;
XX
OS rice (Oryza sativa)
XX
RA Washida H, Wu CY, Suzuki A, Yamanouchi U, Akihama T, Harada K,
RA Takaiwa F
RT Identification of cis-regulatory elements required for endosperm
RT expression of the rice storage protein glutelin gene GluB-1
RL Plant Mol Biol 40:1-12 (1999)
RD PubMed: 10394940;
XX
RA Wu C, Washida H, Onodera Y, Harada K, Takaiwa F
RT Quantitative nature of the Prolamin-box, ACGT and AACA motifs in
RT a rice glutelin gene promoter: minimal cis-element requirements
RT for endosperm-specific gene expression
RL Plant J 23: 415-421 (2000)
RD PubMed: 10929134;
XX
RA Onodera Y, Suzuki A, Wu CY, Washida H, Takaiwa F
RT A rice functional transcriptional activator, RISBZ1, responsible
RT for endosperm-specific expression of storage protein genes
RT through GCN4 motif
RL J Biol Chem 27: 14139-14152 (2001)
RD PubMed: 11133985;
XX
SQ
TGAGTCA
//
ID GGTCCCATGMSAUR
XX
AC S000360
XX
DT 16-Feb-2001 (last modified) seki
XX
DE Sequence found in NDE element in Soybean (G.m.) SAUR (Small
DE Auxin-Up RNA) 15A gene promoter; Involved in auxin
DE responsiveness; See S000270, S000359;
XX
KW SAUR; NDE; Auxin;
XX
OS Soybean (Glycine max)
XX
RA Xu N, Hagen G, Guilfoyle T
RT Multiple auxin response modules in the soybean SAUR 15A promoter
RL Plant Sci 126: 193-201 (1997)
XX
SQ
GGTCCCAT
//
ID GLMHVCHORD
XX
AC S000451
XX
DT 29-November-2004 (last modified) kehi
XX
DE "GLM (GCN4-like motif)" found in the promoter of barley (H.v.)
DE B1- and c-hordein gene; Involved in the nitrogen response of
DE c-hordein promoter; R=A/G; S=C/G; See also S000277 (GCN4OSGLUB1);
DE SPA, a seed-specific basic leucine zipper protein from wheat, can
DE activate transcription from the GCN4-like motif (GLM) of -326
DE LMWG-1D1 promoter (Albani et al., 1997);
XX
KW GLM; GCN4; hordein; GLM;
XX
OS Hordeum vulgare (barley); Triticum aestivum (wheat);
XX
RA Muller M, Knudsen S.
RT The nitrogen response of a barley C-hordein promoter is
RT controlled by positive and negative regulation of the GCN4 and
RT endosperm box.
RL Plant J. 4: 343-355 (1993).
RD PubMed: 8220485
XX
RA Albani D, Hammond-Kosack MC, Smith C, Conlan S, Colot V,
RA Holdsworth M, Bevan MW.
RT The wheat transcriptional activator SPA: a seed-specific bZIP
RT protein that recognizes the GCN4-like motif in the bifactorial
RT endosperm box of prolamin genes.
RL Plant Cell. 9: 171-184 (1997).
RD PubMed: 9061949
XX
RA Onate L, Vicente-Carbajosa J, Lara P, Diaz I, Carbonero P.
RT Barley BLZ2, a seed-specific bZIP protein that interacts with
RT BLZ1 in vivo and activates transcription from the GCN4-like motif
RT of B-hordein promoters in barley endosperm.
RL J Biol Chem. 274: 9175-9182 (1999).
RD PubMed: 10092589
XX
SQ
RTGASTCAT
//
ID GLUTAACAOS
XX
AC S000045
XX
DT 17-May-1998 (last modified) kehi
XX
DE "glutelin common motif"; "AACA motif"; Conserved in all member of
DE rice (0.s.) glutelin; -74 to -64;
XX
KW AACA; glutelin; seed; endosperm;
XX
OS rice (Oryza sativa)
XX
RA Takaiwa F, Oono K
RT Interaction of an immature seed-specific trans-acting factor with
RT the 5' upstream region of a rice glutelin gene.
RL Mol Gen Genet 224:289-293 (1990)
RD PubMed: 2277646;
XX
SQ
AACAAACTCTAT
//
ID GLUTEBOX1OSGT2
XX
AC S000046
XX
DT 17-May-1998 (last modified) kehi
XX
DE "Box 1" of rice (O.s.) glutelin Gt2 gene family promoter regions;
DE nuclear factor binding site;
XX
KW glutelin; Box 1; Gt2; seed; endosperm;
XX
OS rice (Oryza sativa)
XX
RA Kim SY, Wu R
RT Multiple protein factors bind to a rice glutelin promoter
RT region.
RL Nucleic Acids Res 18:6845-6852 (1990)
RD PubMed: 2263449; GenBank: X52153;
XX
SQ
ATATCATGAGTCACTTCA
//
ID GLUTEBOX1OSGT3
XX
AC S000128
XX
DT 17-May-1998 (last modified) kehi
XX
DE "Box 1" of rice (O.s.) glutelin Gt3 gene family promoter region;
DE See S000128 GLUTEBOX2A;
XX
KW Box 1; glutelin; Gt3; seed; endosperm;
XX
OS rice (Oryza sativa);
XX
RA Croissant-Sych Y, Okita TW
RT Identification of positive and negative regulatory cis-elements
RT of the rice glutelin Gt3 promoter.
RL Plant Science 116:27-35 (1996)
XX
SQ
TATCTAGTGAGTCACTTCA
//
ID GLUTEBOX2OSGT2
XX
AC S000047
XX
DT 17-May-1998 (last modified) kehi
XX
DE "Box II" of rice (O.s.) glutelin Gt2 gene family; nuclear factor
DE binding site;
XX
KW glutelin; Box II; Gt2; seed; endosperm;
XX
OS rice (Oryza sativa)
XX
RA Kim SY, Wu R
RT Multiple protein factors bind to a rice glutelin promoter
RT region.
RL Nucleic Acids Res 18:6845-6852 (1990)
RD PubMed: 2263449; GenBank: X52153;
XX
SQ
TCCGTGTACCA
//
ID GLUTEBOX2OSGT3
XX
AC S000129
XX
DT 17-May-1998 (last modified) kehi
XX
DE "Box 2" of rice (O.s.) glutelin Gt3 gene family promoter region;
DE See S000128 GLUTEBOX1A;
XX
KW Box 2; glutelin; Gt3; seed; endosperm;
XX
OS rice (Oryza sativa);
XX
RA Croissant-Sych Y, Okita TW.
RT Identification of positive and negative regulatory cis-elements
RT of the rice glutelin Gt3 promoter.
RL Plant Science 116:27-35 (1996)
XX
SQ
CTTTTGTGTACCTTA
//
ID GLUTEBP1OS
XX
AC S000048
XX
DT 17-May-1998 (last modified) kehi
XX
DE "Glutelin BP-1"; Binding site in the promoter region of glutelin
DE Gt3 gene family of nuclear factor (PB-1); PB-1 is observed only
DE in nuclear extract of developing seeds;
XX
KW glutelin; nuclear factor; seed; endosperm; BP-1; PB-1;
XX
OS rice (Oryza sativa)
XX
RA Zhao, Okita
RL (in press; cited by Croissant-Sych Y, Okita TW, 1996)
XX
RA Croissant-Sych Y, Okita TW.
RT Identification of positive and negative regulatory cis-elements
RT of the rice glutelin Gt3 promoter.
RL Plant Science 116:27-35 (1996)
XX
SQ
AAGCAACACACAAC
//
ID GLUTEBP2OS
XX
AC S000049
XX
DT 17-May-1998 (last modified) kehi
XX
DE "Glutelin BP-2"; Binding with nuclear factors from developing
DE seeds;
XX
KW glutelin; nuclear factor; seed; endosperm; Gt3 gene family;
XX
OS rice (Oryza sativa)
XX
RA Zhao, Okita
RL (in press; cited by Croissant-Sych Y, Okita TW, 1996)
XX
RA Croissant-Sych Y, Okita TW.
RT Identification of positive and negative regulatory cis-elements
RT of the rice glutelin Gt3 promoter.
RL Plant Science 116:27-35 (1996)
XX
SQ
ATGCTCAATAGATATAAGT
//
ID GLUTECOREOS
XX
AC S000050
XX
DT 17-May-1998 (last modified) kehi
XX
DE Core site required for binding of the trans-acting factor in the
DE promoter region of rice (O.s.) glutelin (type 2 glutelin gene
DE family);
XX
KW rice; glutelin; type 2 glutelin; seed; endosperm;
XX
OS rice (Oryza sativa)
XX
RA Takaiwa F, Oono K
RT Interaction of an immature seed-specific trans-acting factor with
RT the 5' upstream region of a rice glutelin gene.
RL Mol Gen Genet 224:289-293 (1990)
RD PubMed: 2277646;
XX
SQ
CTTTCGTGTAC
//
ID GMHDLGMVSPB
XX
AC S000372
XX
DT 31-Jul-2001 (last modified) uchi
XX
DE Binding site of the soybean homeodomein leucine zipper proteins
DE (GmHdl56, GmHdl57); Found in the phosphate response domain of the
DE soybean VspB promoter; Located between -536 and -527; VspB
DE encodes vacuolar glycoprotein acid phosphatase that serve as
DE vegetative storage protein;
XX
KW VspB; HD-ZIPS; phosphate response; homeotic domain;
XX
OS soybean (Glycine max)
XX
RA Tang Z, Sadka A, Morishige DT, Mullet JE
RT Homeodomain leucine zipper proteins bind to the phosphate
RT response domain of the soybean VspB tripartite promoter
RL Plant Physiol 125: 797-809 (2001)
RD PubMed: 11161037;
XX
SQ
CATTAATTAG
//
ID GRAZMRAB17
XX
AC S000150
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE "GRA"; GC-rich rab activator; Found in the promoter of ABA
DE responsive rab17 gene from maize (Z.m.); Important for
DE transcription in leaves but not in embryos; See S000200, S000401
DE and S000402;
XX
KW GRA; ABA; rab17; rab; leaf; embryo; seed;
XX
OS maize (Zea mays)
XX
RA Busk PK, Jensen AB, Pages M
RT Regulatory elements in vivo in the promoter of the abscisic acid
RT responsive gene rab17 from maize.
RL Plant J 11:1258-1295 (1997)
RD PubMed: 9225468;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
CACTGGCCGCCC
//
ID GRAZMRAB28
XX
AC S000220
XX
DT 11-May-2006 (last modified) kehi
XX
DE "GRA"; "GC-rich rab activator"; Found in the promoter of ABA
DE responsive rab28 gene from maize (Z.m.); Similar (seven of 12
DE bases) to the GRA element from the maize rab17 promoter (S000150;
DE GRAZMRAB17); Found at -138 to -130;
XX
KW GRA; ABA; rab28; rab; seed;
XX
OS maize (Zea mays)
XX
RA Busk PK, Pages M
RT Protein binding to the abscisic acid-responsive element is
RT independent of VIVIPAROUS1 in vivo
RL Plant Cell 9:2261-2270 (1997)
RD PubMed: 11407411
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
CATGCCGCC
//
ID GREGIONNTPRB1B
XX
AC S000364
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "G region" found in tobacco (N.t.) PRB-1b gene promoter; Located
DE at -201 to -178; Binding site of nuclear protein; Required for
DE ethylene induction; Contains an 11bp sequence, TAAGAGCCGCC, which
DE is highly conserved in the promoter of ethylene-induced PR genes;
DE Contains a G box motif; See S000365;
XX
KW PR-1; PRB-1b; ethylene; G; G box;
XX
OS Tobacco (Nicotiana tabacum)
XX
RA Meller Y, Sessa G, Eyal Y, Fluhr R
RT DNA-protein interactions on a cis-DNA element essential for
RT ethylene regulation
RL Plant Mol Biol 23: 453-463 (1993)
RD PubMed: 8219081;
XX
SQ
TGGCGGCTCTTATCTCACGTGATG
//
ID GT1CONSENSUS
XX
AC S000198
XX
DT 11-May-2006 (last modified) kehi
XX
DE Consensus GT-1 binding site in many light-regulated genes, e.g.,
DE RBCS from many species, PHYA from oat and rice, spinach RCA and
DE PETA, and bean CHS15; R=A/G; W=A/T; For a compilation of related
DE GT elements and factors, see Villain et al. (1996); GT-1 can
DE stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation
DE mechanism of GT-1 may be achieved through direct interaction
DE between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a
DE promoter influences the level of SA-inducible gene expression;
XX
KW GT-1; light; TATA; TFIIA; TBP; HR; SAR; TMV; leaf; shoot;
XX
OS pea (Pisum sativum); oat (Avena sativa); rice (Oryza sativa);
OS tobacco (Nicotiana tabacum); Arabidopsis thaliana; spinach
OS (Spinacia oleracea); bean;
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
RC Review
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Le Gourrierec J, Li YF, Zhou DX
RT Transcriptional activation by Arabidopsis GT-1 may be through
RT interaction with TFIIA-TBP-TATA complex
RL Plant J 18:663-668 (1999)
RD PubMed: 10417717
XX
RA Buchel AS, Brederode FT, Bol JF, Linthorst HJM
RT Mutation of GT-1 binding sites in the Pr-1A promoter influences
RT the level of inducible gene expression in vivo
RL Plant Mol Biol 40:387-396 (1999)
RD PubMed: 10437823;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
GRWAAW
//
ID GT1CORE
XX
AC S000125
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE Critical for GT-1 binding to box II of rbcS; See S000051
DE GT1MOTIF1; For a compilation of related GT elements and factors,
DE see Villain et al. (1996);
XX
KW rbcS; box II; GT-1; rbcS-3; leaf; shoot;
XX
OS pea (Pisum sativum);
XX
RA Green PJ, Yong M-H, Cuozzo M, Kano-Murakami Y, Silverstein P,
RA Chua N-H
RT Binding site requirements for pea nuclear protein factor GT-1
RT correlate with sequences required for light-dependent
RT transcriptional activation of the rbcS-3A gene.
RL EMBO J 7:4035-4044 (1988)
RD PubMed: 3243271;
XX
RA Gilmartin PM, Sarokin L, Memelink J, Chua N-H
RT Molecular light switches for plant genes.
RL Plant Cell 2:369-378 (1990)
RD PubMed: 2152164;
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
XX
SQ
GGTTAA
//
ID GT1GMSCAM4
XX
AC S000453
XX
DT 29-November-2004 (last modified) kehi
XX
DE "GT-1 motif" found in the promoter of soybean (Glycine max) CaM
DE isoform, SCaM-4; Plays a role in pathogen- and salt-induced
DE SCaM-4 gene expression; See also S000198 (GT-1 consensus);
XX
KW GT-1 box;
XX
OS Glycine max (soybean)
XX
RA Park HC, Kim ML, Kang YH, Jeon JM, Yoo JH, Kim MC, Park CY, Jeong
RA JC, Moon BC, Lee JH, Yoon HW, Lee SH, Chung WS, Lim CO, Lee SY,
RA Hong JC, Cho MJ.
RT Pathogen- and NaCl-induced expression of the SCaM-4 promoter is
RT mediated in part by a GT-1 box that interacts with a GT-1-like
RT transcription factor.
RL Plant Physiol. 135: 2150-2161 (2004).
RD PubMed: 15310827
XX
SQ
GAAAAA
//
ID GT1MOTIFPSRBCS
XX
AC S000051
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE "GT-1 motif"; "Consensus sequence of rbcS BOX II, III, II',
DE III'"; "GT-1 box"; 5' upstream region (-151) of pea (P.s.) rbcS
DE gene; binding with trans factor GT-1; See S000125 GT1CORE; K=G/T;
DE W=A/T; R=A/G; For a compilation of related GT elements and
DE factors, see Villain et al. (1996);
XX
KW RBCS; BOX 2; Box II; GT-1; PEA; leaf; shoot;
XX
OS pea (Pisum sativum)
XX
RA Green PJ, Yong M-H, Cuozzo M, Kano-Murakami Y, Silverstein P,
RA Chua N-H
RT Binding site requirements for pea nuclear protein factor GT-1
RT correlate with sequences required for light-dependent
RT transcriptional activation of the rbcS-3A gene.
RL EMBO J 7:4035-4044 (1988)
RD PubMed: 3243271;
XX
RA Gilmartin PM, Sarokin L, Memelink J, Chua N-H
RT Molecular light switches for plant genes.
RL Plant Cell 2:369-378 (1990)
RD PubMed: 2152164;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
XX
SQ
KWGTGRWAAWRW
//
ID GT2OSPHYA
XX
AC S000207
XX
DT 11-May-2006 (last modified) kehi
XX
DE GT-2 (a rice nuclear protein) binding site in a rice (O.s.) phyA
DE promoter; phyA gene are transcriptionaly repressed in response to
DE light; One of GT elements; For a compilation of related GT
DE elements and factors, see Villain et al. (1996); The HMG-1/Y
DE protein PF1 stimulates binding of the GT-2 to PHYA gene
DE promoter;
XX
KW GT-2; phyA; GT; light; HMG-1/Y protein; PF1; leaf; shoot;
XX
OS rice (Oryza sativa); oat (Avena sativa);
XX
RA Dehesh K, Bruce WB, Quail PH
RT A trans-acting factor that binds to a GT-motif in a phytochrome
RT gene promoter
RL Science 250:1397-1399 (1990)
RD PubMed: 2255908;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Martinez-Garcia JF, Quail PH
RT The HMG-I/Y protein PF1 stimulates binding of the transcriptional
RT activator GT-2 to the PHYA gene promoter
RL Plant J 18:173-183 (1999)
RD PubMed: 10363369;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
GCGGTAATT
//
ID GTGANTG10
XX
AC S000378
XX
DT 23-Aug-2001 (last modified) uchi
XX
DE "GTGA motif" found in the promoter of the tobacco (N.t.) late
DE pollen gene g10 which shows homology to pectate lyase and is the
DE putative homologue of the tomato gene lat56; Located between -96
DE and -93; See S000280;
XX
KW g10; pollen; pectate lyase;
XX
OS tabacco(Nicotiana tabacum)
XX
RA Rogers HJ, Bate N, Combe J, Sullivan J, Sweetman J, Swan C,
RA Lonsdale DM, Twell D
RT Functional analysis of cis-regulatory elements within the
RT promoter of the tobacco late pollen gene g10
RL Plant Mol Biol 45: 577-585 (2001)
RD PubMed: 11414616;
XX
SQ
GTGA
//
ID HBOXCONSENSUSPVCHS
XX
AC S000200
XX
DT 27-Aug-2002 (last modified) uchi
XX
DE "H-box"; Consensus sequence of H-boxes found in bean (Phaseolus
DE vulgaris) chs15 gene promoter; Essential for both light
DE regulation and elicitor induction; Similar sequence was found in
DE tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by
DE wounding and by abiotic stress; "KAP-2" binds to the H-box and
DE stimulates transcription from a promoter harboring the H-box;
DE "KAP-2" shares sequence similarity to the large subunit of
DE mammalian Ku autoantigen; See S000150, S000402 and S000401;
XX
KW H-box; H box; CHS; chs; light regulation; light; elicitor;
KW stress; transposon; wounding; leaf; shoot; Ku autoantigen;
KW KAP-2;
XX
OS bean (Phaseolus vulgaris); tobacco;
XX
RA Loake GJ, Faktor O, Lamb CJ, Dixon RA
RT Combination of H-box [CCTACC(N)7CT] and G-box (CACGTG) cis
RT elements is necessary for feed-forward stimulation of a chalcone
RT synthase promoter by the phenypropanoid-pathway intermediate
RT p-coumaric acid
RL Proc Natl Acad Sci USA 89:9230-9234(1992)
RD PubMed: 1409628;
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
RC Review
XX
RA Mhiri C, Morel JB, Vernhettes S, Casacuberta JM, Lucas H,
RA Grandbastien MA
RT The promoter of the tobacco Tnt1 retrotransposon is induced by
RT wounding and by abiotic stress
RL Plant Mol Biol 33:257-266 (1997)
RD PubMed: 9037144;
XX
RA Lindsay WP, McAlister FM, Zhu Q, He XZ, Droge-Laser W, Hedrick S,
RA Doerner P, Lamb C, Dixon RA
RT KAP-2, a protein that binds to the H-box in a bean chalcone
RT synthase promoter, is a novel plant transcription factor with
RT sequence identity to the large subunit of human Ku autoantigen
RL Plant Mol Biol 49: 503-514 (2002)
RD PubMed: 12090626;
XX
SQ
CCTACCNNNNNNNCT
//
ID HBOXPVCHS15
XX
AC S000361
XX
DT 16-Feb-2001 (last modified) seki
XX
DE Binding site of two bean protein factors, KAP-1 and KAP-2; KAP-1
DE is a 97 kDa polypeptide; KAP-2 comprises two polypeptides of 76
DE kDa and 56 kDa; Elicitation of bean cell with glutathione causes
DE a rapid increase in specific activities of KAP-1 and KAP2;
XX
KW H-box; KAP-1; KAP-2; elicitor; glutathione;
XX
OS bean (Phaseolus vulgaris)
XX
RA Yu LM, Lamb CJ, Dixon RA
RT Purification and biochemical characterization of proteins which
RT bind to the H-box cis-element implicated in transcriptional
RT activation of plant defense genes
RL Plant J 3: 805-816 (1993)
RD PubMed: 8401613;
XX
SQ
CCTACCNNNNNNNCTNNNNA
//
ID HDMOTIFPCPR2
XX
AC S000233
XX
DT 17-May-1998 (last modified) kehi
XX
DE HD (homeodomain) protein target site in parsley (P.c.)
DE pathogenesis-related protein 2 (PR2); A potential in vivo target
DE site;
XX
KW HD; homeodomain; PR2;
XX
OS parsley (Petroselinum crispum)
XX
RA Korfhage U, Trezzini GF, Meier I, Hahlbrock K, Somssich IE
RT Plant homeodomain protein involved in transcriptional regulation
RT of a pathogen defense-related gene
RL Plant Cell 6:695-708 (1994)
RD PubMed: 7913642;
XX
SQ
CTAATTGTTTA
//
ID HDZIP2ATATHB2
XX
AC S000373
XX
DT 31-Jul-2001 (last modified) uchi
XX
DE Binding site of the Arabidopsis (A.T.) homeobox gene (ATHB-2)
DE found in its own promoter; Located between -72 and -80; Similar
DE to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated
DE by light signals which function as a negative autoregulator of
DE its own gene; M=C/A;
XX
KW ATHB-2; HAT4; HD-ZIP; shade avoidance responses;
XX
OS Arabidopsis thaliana
XX
RA Ohgishi M, Oka A, Morelli G, Ruberti I, Aoyama T
RT Negative autoregulation of the Arabidopsis homeobox gene ATHB-2
RL Plant J 25: 389-398 (2001)
RD PubMed: 11260495;
XX
SQ
TAATMATTA
//
ID HDZIPIIIAT
XX
AC S000475
XX
DT 05-November-2005 (last modified) kehi
XX
DE Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip
DE proteins (HD-ZIP III), in Arabidopsis recognize this sequence;
DE See also S000371; S=G/C;
XX
KW Homeobox; HD-ZIP;
XX
OS Arabidopsis thaliana
XX
RA Sessa G, Steindler C, Morelli G, Ruberti I.
RT The Arabidopsis Athb-8, -9 and -14 genes are members of a small
RT gene family coding for highly related HD-ZIP proteins.
RL Plant Mol Biol. 38: 609-622.(1998)
RD PubMed: 9747806
XX
RA Ohashi-Ito K, Kubo M, Demura T, Fukuda H.
RT Class III Homeodomain Leucine-Zipper Proteins Regulate Xylem Cell
RT Differentiation.
RL Plant Cell Physiol. 46: 1646-1656 (2005)
RD PubMed: 16081527
XX
SQ
GTAATSATTAC
//
ID HEXAMERATH4
XX
AC S000146
XX
DT 10-May-1998 (last modified) kehi
XX
DE hexamer motif of Arabidopsis thaliana (A.t.) histone H4
DE promoter;
XX
KW hexamer; histone; H4; meristem;
XX
OS Arabidopsis thaliana;
XX
RA Chaubet N, Flenet M, Clement B, Brignon P, Gigot C
RT Identification of cis-elements regulating the expression of an
RT Arabidopsis histone H4 gene.
RL Plant J 10:425-435 (1996)
RD PubMed: 8811858;
XX
SQ
CCGTCG
//
ID HEXAT
XX
AC S000334
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "Hex motif"; Binding site of Arabidopsis (A.t.) bZIP protein TGA1
DE and G box binding factor GBF1; TGA1 and members of the GBF family
DE differ in their DNA binding properties; G-Box-like element;
XX
KW TGA1; GBF; G-box; bZIP; Hex motif;
XX
OS Arabidopsis thaliana
XX
RA Schindler U, Beckmann H, Cashmore AR
RT TGA1 and G-box binding factors: two distinct classes of
RT Arabidopsis leucine zipper proteins compete for the G-box-like
RT element TGACGTGG
RL Plant Cell 4: 1309-1319 (1992)
RD PubMed: 1446171; GenBank: X68053
XX
SQ
TGACGTGG
//
ID HEXMOTIFTAH3H4
XX
AC S000053
XX
DT 11-May-2006 (last modified) kehi
XX
DE "hexamer motif" found in promoter of wheat (T.a.) histone genes
DE H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding
DE site of wheat (T.a.) nuclear protein HBP-1 (histone DNA binding
DE protein-1); HBP-1 has a leucine zipper motif; "hexamer motif" in
DE type 1 element may play important roles in regulation of
DE replication- dependent but not of replication-independent
DE expression of the wheat histone H3 gene; See S000076, S000267;
DE Rice OBF1-homodimer-binding site (Shimizu et al.);
XX
KW hexamer; HBP-1A; HBP-1B; histone H3; CaMV; 35S; NOS; HBP-1;
KW Leucine zipper motif; meristem; OBF1; bZIP; lip19; LIP19;
XX
OS wheat (Triticum aestivum); CaMV; Oryza sativa (rice);
XX
RA Mikami K, Tabata T, Kawata T, Nakayama T, Iwabuchi M
RT Nuclear protein(s) binding to the conserved DNA hexameric
RT sequence postulated to regulate transcription of wheat histone
RT genes.
RL FEBS Lett 223: 273-278 (1987)
RD PubMed: 2822486;
XX
RA Mikami K, Nakayama T, Kawata T, Tabata T, Iwabuchi M
RT Specific interaction of nuclear protein HBP-1 with the conserved
RT hexameric sequence ACGTCA in the regulatory region of wheat
RT histone genes.
RL Plant Cell Physiol 30:107-119 (1989).
RD PubMed: 2772648;
XX
RA Tabata T, Takase H, Takayama S, Mikami K, Nakatsuka A, Kawata T,
RA Nakayama T, Iwabuchi M
RT A protein that binds to a cis-acting element of wheat histone
RT genes has a leucine zipper motif
RL Science 245: 965-967 (1989)
RD PubMed: 2772648
XX
RA Terada R, Nakayama T, Iwabuchi M, Shimamoto K
RT A type I element composed of the hexamer (ACGTCA) and octamer
RT (CGCGGATC) motifs plays a role(s) in meristematic expression of a
RT wheat histone H3 gene in transgenic rice plants
RL Plant Mol Biol 27: 17-26 (1995)
RD PubMed: 7865787
XX
RA Shimizu H, Sato K, Berberich T, Miyazaki A, Ozaki R, Imai R,
RA Kusano T.
RT LIP19, a Basic Region Leucine Zipper Protein, is a Fos-like
RT Molecular Switch in the Cold Signaling of Rice Plants.
RL Plant Cell Physiol. 46 :1623-34. (2005)
RD PubMed: 16051676
XX
SQ
ACGTCA
//
ID HSE
XX
AC S000054
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "HSE (heat shock response element)"; consensus sequence found in
DE the promoter regions of heat shock protein genes; HSF binding
DE site; HsfA3, a new member of the Hsf (heat stress transcription
DE factor) family; was isolated by yeast two-hybrid screening, using
DE HsfA1 as a bait; HsfA3 is a single copy gene with all conserved
DE sequence elements characteristic of a heat stress transcription
DE factor;
XX
KW heat shock; HSP; HSE;
XX
OS animal; plant; Drosophila; tomato (Lycopersicon peruvianum);
XX
RA Pelham H
RT Activation of heat-shock genes in eukaryotes.
RL Trends Genet 1:31-35 (1985)
RC Review
XX
RA Bharti K, Schmidt E, Lyck R, Heerklotz D, Bublak D, Scharf KD
RT Isolation and characterization of HsfA3, a new heat stress
RT transcription factor of Lycopersicon peruvianum
RL Plant J (2000) 22: 355-365
RD PubMed: 10849352;
XX
SQ
CTNGAANNTTCNAG
//
ID HSELIKENTACIDICPR1
XX
AC S000056
XX
DT 17-May-1997 (last modified) kehi
XX
DE "HSE-like motif" in -56 region of acidic PR1 gene of tobacco
DE (N.t.); not found in basic PR1 gene;
XX
KW tobacco; PR-protein; hse;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Pfitzner UM, Pfitzner AJP, Goodman HM
RT DNA sequence analysis of a PR-1a gene from tobacco: Molecular
RT relationship of heat shock and pathogen responses in plants.
RL Mol Gen Genet 211:290-295 (1988)
XX
SQ
CNNGAANNNTTCNNG
//
ID HSELIKENTGLN2
XX
AC S000057
XX
DT 17-May-1998 (last modified) kehi
XX
DE "HSE-like sequence" in 5' upstream region of beta-1,3-glucanase
DE gene (GLN2) of tobacco (N.t.);
XX
KW tobacco; beta-1,3-glucanase group 2; PR-protein; hse; promoter;
KW heat shock;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Ohme-Takagi M, Shinshi H
RT Structure and expression of a tobacco beta-1,3-glucanase gene.
RL Plant Mol Biol 15:941-946 (1990)
RD PubMed: 2103484; GenBank: X53600;
XX
SQ
AGGAATTCCT
//
ID HSRENTHSR203J
XX
AC S000466
XX
DT 24-April-2005 (last modified) kehi
XX
DE "HSRE(HSR203 responsive element)" in tobacco (N.t.) responsible
DE for the marked induction of the HSR203J gene during the HR
DE (hypersensitive response); HSR203J is specifically activated
DE during the early steps of incompatible plant/pathogen
DE interactions;
XX
KW HR
XX
OS Nicotiana tabacum (tobacco)
XX
RA Pontier D, Balague C, Bezombes-Marion I, Tronchet M, Deslandes L,
RA Roby D.
RT Identification of a novel pathogen-responsive element in the
RT promoter of the tobacco gene HSR203J, a molecular marker of the
RT hypersensitive response.
RL Plant J. 26: 495-507 (2001).
RD PubMed: 11439136
XX
SQ
CAAAATTTTGTA
//
ID HY5AT
XX
AC S000345
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "G box"; Binding site of Arabidopsis bZIP protein HY5; HY5 is
DE constitutively nuclear localized and is involved in light
DE regulation of transcriptional activity of the promoters
DE containing the G-box; See S000041, S000042, S000229; HY5
DE abundance peaks in early seedling development, consistent with
DE its role in promoting photomorphogenesis; HY5 stability and
DE activity is regulated by phosphorylation in its COP1 binding
DE domain; HY5 regulates stimulus-induced development of root and
DE hypocotyl;
XX
KW bZIP; HY5; LRE; G box; COP1; bZIP; stimulus-response; root;
KW hypocotyl; leaf; shoot;
XX
OS Arabidopsis thaliana
XX
RA Chattopadhyay S, Ang LH, Puente P, Deng XW, Wei N
RT Arabidopsis bZIP protein HY5 directly interacts with
RT light-responsive promoters in mediating light control of gene
RT expression
RL Plant Cell 10:673-683 (1998)
RD PubMed: 9596629;
XX
RA Hardtke CS, Gohda K, Osterlund MT, Oyama T, Okada K, Deng XW
RT HY5 stability and activity in arabidopsis is regulated by
RT phosphorylation in its COP1 binding domain
RL EMBO J 19: 4997-5006 (2000)
RD PubMed: 10990463;
XX
RA Oyama T, Shimura Y, Okada K
RT The Arabidopsis HY5 gene encodes a bZIP protein that regulates
RT stimulus-induced development of root and hypocotyl
RL Genes Dev (1997) 11: 2983-2995
RD PubMed: 9367981;
XX
SQ
TGACACGTGGCA
//
ID IBOX
XX
AC S000124
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "I box"; "I-box"; Conserved sequence upstream of light-regulated
DE genes; Sequence found in the promoter region of rbcS of tomato
DE and Arabidopsis; I box (Giuliano et al. 1988); Binding site of
DE LeMYB1, that is a member of a novel class of myb-like proteins;
DE LeMYBI act as a transcriptional activator;
XX
KW I box; I-box; rbcS; light regulation; light; LeMYB1, Myb-like
KW protein; leaf; shoot;
XX
OS tomato (Lycopersicon esculentum); Arabidopsis thaliana;
XX
RA Giuliano G, Pichersky E, Malik VS, Timko MP, Scolnik PA, Cashmore
RA AR
RT An evolutionarily conserved protein binding sequence upstream of
RT a plant light-regulated gene.
RL Proc Natl Acad Sci USA 85:7089-7093 (1988)
RD PubMed: 2902624;
XX
RA Donald RGK, Cashmore AR
RT Mutation of either G box or l box sequences profoundly affects
RT expression from the Arabidopsis rbcS-1A promoter.
RL EMBO J 9:1717-1726 (1990)
RD PubMed: 2347304;
XX
RA Rose A, Meier I, Wienand U
RT The tamato I-box binding factor LeMYBI is a member of a novel
RT class of Myb-like proteins
RL Plant J 20: 641-652 (1999)
RD PubMed: 10652136;
XX
SQ
GATAAG
//
ID IBOXCORE
XX
AC S000199
XX
DT 2-May-1998 (last modified) kehi
XX
DE "I box"; "I-box"; Conserved sequence upstream of light-regulated
DE genes; Conserved sequence upstream of light-regulated genes of
DE both monocots and dicots; See IBOX (S000124);
XX
KW I box; I-box; rbcS; light regulation; light; leaf; shoot;
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
RC Review
XX
SQ
GATAA
//
ID IBOXCORENT
XX
AC S000424
XX
DT 29-Sep-2003 (last modified) kehi
XX
DE "I-box core motif" in the CAMs (conserved DNA modular arrays)
DE associated with light-responsive promoter regions; See S000124
DE (GATAAG), S000199 (GATAA), S000213;
XX
KW I-box; CAM; light;
XX
OS Nicotiana plumbaginifolia (tobacco)
XX
RA Martinez-Hernandez A, Lopez-Ochoa L, Arguello-Astorga G,
RA Herrera-Estrella L.
RT Functional properties and regulatory complexity of a minimal RBCS
RT light-responsive unit activated by phytochrome, cryptochrome, and
RT plastid signals.
RL Plant Physiol. 128:1223-1233 (2002)
RD PubMed: 11950971;
XX
SQ
GATAAGR
//
ID IBOXLSCMCUCUMISIN
XX
AC S000423
XX
DT 29-Sep-2003 (last modified) kehi
XX
DE "I-box-like sequence" found in the region (from -254 to -215) of
DE cucumisin (a subtilisin-like serine protease) in the fruit of
DE melon (Cucumis melo L.); I-box-like sequence functions as a
DE negative regulatory element; See S000199 (I-box, GATAA), S000124
DE (I-box, GATAAG);
XX
KW cucumisin; fruit;
XX
OS Cucumis melo L. (melon)
XX
RA Yamagata H, Yonesu K, Hirata A, Aizono Y.
RT TGTCACA motif is a novel cis-regulatory enhancer element involved
RT in fruit-specific expression of the cucumisin gene.
RL J Biol Chem. 277:11582-11590 (2002)
RD PubMed: 11782472;
XX
SQ
AGATATGATAAAA
//
ID IDE1HVIDS2
XX
AC S000463
XX
DT 24-April-2005 (last modified) kehi
XX
DE IDE1 (iron-deficiency-responsive element 1) found at -153/-136 of
DE barley IDS2 (iron deficiency specific clone 2) gene promoter; See
DE also S000464;
XX
KW iron; root;
XX
OS Hordeum vulgare (barley)
XX
RA Kobayashi T, Nakayama Y, Itai RN, Nakanishi H, Yoshihara T, Mori
RA S, Nishizawa NK.
RT Identification of novel cis-acting elements, IDE1 and IDE2, of
RT the barley IDS2 gene promoter conferring
RT iron-deficiency-inducible, root-specific expression in
RT heterogeneous tobacco plants.
RL Plant J. 36: 780-793 (2003).
RD PubMed: 14675444
XX
RA Kobayashi T, Suzuki M, Inoue H, Itai RN, Takahashi M, Nakanishi
RA H, Mori S, Nishizawa NK.
RT Expression of iron-acquisition-related genes in iron-deficient
RT rice is co-ordinately induced by partially conserved
RT iron-deficiency-responsive elements.
RL J Exp Bot. 56: 1305-1316. (2005)
RD PubMed: 15781441
XX
SQ
ATCAAGCATGCTTCTTGC
//
ID IDE2HVIDS2
XX
AC S000464
XX
DT 24-April-2005 (last modified) kehi
XX
DE IDE2 (iron-deficiency-responsive element 2) found at -262/-236 of
DE barley IDS2 (iron deficiency specific clone 2) gene promoter; See
DE also S000463;
XX
KW iron; root;
XX
OS Hordeum vulgare (barley)
XX
RA Kobayashi T, Nakayama Y, Itai RN, Nakanishi H, Yoshihara T, Mori
RA S, Nishizawa NK.
RT Identification of novel cis-acting elements, IDE1 and IDE2, of
RT the barley IDS2 gene promoter conferring
RT iron-deficiency-inducible, root-specific expression in
RT heterogeneous tobacco plants.
RL Plant J. 36: 780-793 (2003).
RD PubMed: 14675444
XX
RA Kobayashi T, Suzuki M, Inoue H, Itai RN, Takahashi M, Nakanishi
RA H, Mori S, Nishizawa NK.
RT Expression of iron-acquisition-related genes in iron-deficient
RT rice is co-ordinately induced by partially conserved
RT iron-deficiency-responsive elements.
RL J Exp Bot. 56: 1305-1316. (2005)
RD PubMed: 15781441
XX
SQ
TTGAACGGCAAGTTTCACGCTGTCACT
//
ID IDRSZMFER1
XX
AC S000445
XX
DT 04-August-2006 (last modified) kehi
XX
DE "IDRS" (Iron-Dependent Regulatory Sequence) found in maize and
DE Arabidopsis ferritin genes (Fer1); IDRS is responsible for
DE transcriptional repression of ZmFer1 gene under low iron supply
DE conditions; S=C/G; K=G/T; IDRS is not involved in the
DE Fe-regulated expression of the AtAPX1 gene (Fourcroy et al.,
DE 2004);
XX
KW iron; ferritin; APX1; AtFer1; Fer;
XX
OS Zea mays (maize); Arabidopsis thaliana;
XX
RA Petit JM, van Wuytswinkel O, Briat JF, Lobreaux S.
RT Characterization of an iron-dependent regulatory sequence
RT involved in the transcriptional control of AtFer1 and ZmFer1
RT plant ferritin genes by iron.
RL J Biol Chem. 276:5584-5590. (2001)
RD PubMed: 11092880
XX
RA Fourcroy P, Vansuyt G, Kushnir S, Inze D, Briat JF.
RT Iron-regulated expression of a cytosolic ascorbate peroxidase
RT encoded by the APX1 gene in Arabidopsis seedlings.
RL Plant Physiol. 134: 605-613 (2004). .
RD PubMed: 14739345
XX
RA Tarantino D, Petit JM, Lobreaux S, Briat JF, Soave C, Murgia I.
RT Differential involvement of the IDRS cis-element in the
RT developmental and environmental regulation of the AtFer1 ferritin
RT gene from Arabidopsis.
RL Planta. 217: 709-716 (2003)
RD PubMed: 12728319
XX
RA Arnaud N, Murgia I, Boucherez J, Briat JF, Cellier F, Gaymard F.
RT An iron-induced nitric oxide burst precedes ubiquitin-dependent
RT protein degradation for arabidospsis atfer1 ferritin gene
RT expression.
RL J Biol Chem. 2006 Jun 16; [Epub ahead of print]
RD PubMed: 16782706
XX
SQ
CACGAGSCCKCCAC
//
ID INRNTPSADB
XX
AC S000395
XX
DT 21-May-2002 (last modified) uchi
XX
DE "Inr (initiator)" elements found in the tobacco psaDb gene
DE promoter without TATA boxes; Light-responsive transcription of
DE psaDb depends on Inr, but not TATA box;
XX
KW initiater; light-responsive transcription; TATA-less promoter;
KW psaDb; Inr element;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Nakamura M, Tsunoda T, Obokata J
RT Photosynthesis nuclear genes generally lack TATA-boxes: a tobacco
RT photosystem I gene responds to light through an initiater
RL Plant J 29: 1-10 (2002)
RD PubMed: 12060222 ;
XX
SQ
YTCANTYY
//
ID INTRONLOWER
XX
AC S000086
XX
DT 17-May-1998 (last modified) kehi
XX
DE "3' intron-exon splice junctions"; Plant intron lower sequence;
DE Consensus sequence for plant introns;
XX
KW intron; splice junction;
XX
OS maize (Zea mays)
XX
RA Brown JWS
RT A catalog of splice junction and putative branch point sequences
RT from plant introns.
RL Nucleic Acids Res 14:9549-9559 (1986)
RC Review
RD PubMed: 3808952;
XX
SQ
TGCAGG
//
ID INTRONUPPER
XX
AC S000085
XX
DT 17-May-1998 (last modified) kehi
XX
DE "5' exon-intron splice junctions" of plant introns; Plant intron
DE upper sequence; Consensus sequence for plant introns;
XX
KW intron; splice junction;
XX
OS maize (Zea mays)
XX
RA Brown JWS
RT A catalog of splice junction and putative branch point sequences
RT from plant introns.
RL Nucleic Acids Res 14:9549-9559 (1986)
RC Review
RD PubMed: 3808952;
XX
SQ
MAGGTAAGT
//
ID IRO2OS
XX
AC S000505
XX
DT 15-September-2006 (last modified) kehi
XX
DE OsIRO2-binding core sequence; "G-box plus G"; Transcription
DE factor OsIRO2 is induced exclusively by Fe deficiency;
XX
KW root; shoot; Fe; iron;
XX
OS Oryza sativa (rice)
XX
RA Ogo Y, Itai RN, Nakanishi H, Inoue H, Kobayashi T, Suzuki M,
RA Takahashi M, Mori S, Nishizawa NK.
RT Isolation and characterization of IRO2, a novel iron-regulated
RT bHLH transcription factor in graminaceous plants.
RL J Exp Bot. 57:2867-2878. (2006)
RD PubMed: 16887895
XX
SQ
CACGTGG
//
ID JASE1ATOPR1
XX
AC S000388
XX
DT 20-Feb-2002 (last modified) uchi
XX
DE "JASE1"found in promoter of Arabidopsis thaliana
DE 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located
DE between -179 and -170; Involved in up-regulation by both
DE senescence and JA;
XX
KW OPR1; senescence; Jasmonic acid; JASE1; JASE2; leaf;
XX
OS Arabidopsis thaliana
XX
RA He Y, Gan S
RT Identical promoter elements are involved in regulation of the
RT OPR1 gene by senescence and jasmonic acid in Arabidopsis
RL Plant Mol Biol 47: 595-605 (2001)
RD PubMed: 11725945;
XX
SQ
CGTCAATGAA
//
ID JASE2ATOPR1
XX
AC S000389
XX
DT 20-Feb-2002 (last modified) uchi
XX
DE "JASE2"found in promoter of Arabidopsis thaliana
DE 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located
DE between -112 and -100; Involved in up-regulation by both
DE senescence and JA; JASE2 contains a mixed A/C box-like motif;
XX
KW OPR1; senescence; Jasmonic acid; JASE1; JASE2; leaf;
XX
OS Arabidopsis thaliana
XX
RA He Y, Gan S
RT Identical promoter elements are involved in regulation of the
RT OPR1 gene by senescence and jasmonic acid in Arabidopsis
RL Plant Mol Biol 47: 595-605 (2001)
RD PubMed: 11725945;
XX
SQ
CATACGTCGTCAA
//
ID JERECRSTR
XX
AC S000384
XX
DT 21-Nov-2002 (last modified) uchi
XX
DE "JERE" (jasmonate- and elicitor-responsive element) found in the
DE periwinkle(C.R.) strictosidine synthase(Str) gene promoter;
DE Located between -100 and -58; ORCA1, ORCA2 and ORCA3 bind
DE specifically to the JERE of the Str promoter; Elicitor and MeJA
DE rapidly induce Orca2, but not Orca1 mRNA levels; ORCA3 mRNA
DE accumulation was rapidly induced by the metyljasmonate;
XX
KW JERE; JA; jasmonate; elicitor; strictosidine synthase(Str);
KW ORCA1; ORCA2; ORCA3; AP2 domain;
XX
OS periwinkle(Catharanthus roseus)
XX
RA Menke FL, Champion A, Kijne JW, Memelink J
RT A novel jasmonate- and elicitor-responsive element in the
RT periwinkle secondary metabolite biosynthetic gene Str interacts
RT with a jasmonate- and elicitor-inducible AP2-domain transcription
RT factor, ORCA2
RL EMBO J 18: 4455-4463 (1999)
RD PubMed: 10449411;
XX
RA van der Fits L, Memelink J
RT The jasmonate-inducible AP2/ERF-domain transcription factor ORCA3
RT activates gene expression via interaction with a
RT jasmonate-responsive promoter element
RL Plant J 25: 43-53 (2001)
RD PubMed: 11169181;
XX
RA Rushton PJ, Reinstadler A, Lipka V, Lippok B, Somssich IE
RT Synthetic plant promoters containing defined regulatory elements
RT provide novel insights into pathogen- and wound-induced
RT signaling
RL Plant Cell. 14: 749-762 (2002)
RD PubMed: 11971132;
XX
SQ
CTCTTAGACCGCCTTCTTTGAAAG
//
ID L1BOXATPDF1
XX
AC S000386
XX
DT 05-November-2005 (last modified) kehi
XX
DE "L1 box" found in promoter of Arabidopsis thaliana (A.t.)
DE PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127;
DE Involved in L1 layer-specific expression; L1-specific homeodomain
DE protein ATML can bind to the "L1 box"; Y=C/T; A cotton fiber
DE gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box
DE and a MYB binding motif (Wang et al., 2004); HDZip IV; See also
DE S000371;
XX
KW PDF1; L1 box; L1 layer-specific expression; Shoot apical
KW meristem; SAM; organ primordia; cotton fiber; HDZip; homeodomain;
KW leucine zipper;
XX
OS Arabidopsis thaliana; Gossypium spp (cotton);
XX
RA Abe M, Takahashi T, Komeda Y
RT Identification of a cis-regulatory element for L1 layer-specific
RT gene expression, which is targeted by an L1-specific homeodomain
RT protein
RL Plant J 26: 487-494 (2001)
RD PubMed: 11439135;
XX
RA Wang S, Wang JW, Yu N, Li CH, Luo B, Gou JY, Wang LJ, Chen XY.
RT Control of plant trichome development by a cotton fiber MYB
RT gene.
RL Plant Cell 16: 2323-2334 (2004)
RD PubMed: 15316114
XX
RA Henriksson E, Olsson AS, Johannesson H, Johansson H, Hanson J,
RA Engstrom P, Soderman E.
RT Homeodomain leucine zipper class I genes in Arabidopsis.
RT Expression patterns and phylogenetic re
RL Plant Physiol. 139: 509-518. (2005)
RD PubMed: 16055682
XX
RA Abe M, Katsumata H, Komeda Y, Takahashi T.
RT Regulation of shoot epidermal cell differentiation by a pair of
RT homeodomain proteins in Arabidopsis.
RL Development. 130: 635-643.(2003)
RD PubMed: 12505995
XX
RA Ohashi Y, Oka A, Rodrigues-Pousada R, Possenti M, Ruberti I,
RA Morelli G, Aoyama T.
RT Modulation of phospholipid signaling by GLABRA2 in root-hair
RT pattern formation.
RL Science. 300: 1427-1430 (2003).
RD PubMed: 12775839
XX
SQ
TAAATGYA
//
ID L1DCPAL1
XX
AC S000504
XX
DT 15-September-2006 (last modified) kehi
XX
DE "L1" element, found in PAL1 promoter in carrot (Daucus carota),
DE is a protoplastization (dilution) responsive element; L1 contains
DE Box L-like sequence (ACCTACCC); see also S000492 (BOXL CORE of DC
DE PAL1);
XX
KW L1
XX
OS Daucus carota (carrot)
XX
RA Takeda J, Ito Y, Maeda K, Ozeki Y.
RT Assignment of UVB-responsive cis-element and
RT protoplastization-(dilution-) and elicitor-responsive ones in the
RT promoter region of a carrot phenylalanine ammonia-lyase gene
RT (gDcPAL1).
RL Photochem Photobiol. 76:232-238 (2002).
RD PubMed: 12194222
XX
SQ
ATTCACCTACCC
//
ID L4DCPAL1
XX
AC S000503
XX
DT 15-September-2006 (last modified) kehi
XX
DE "L4" element, found in PAL1 promoter in carrot (Daucus carota),
DE is a UV-B responsive element; L4 contains Box L-like sequence
DE (TCCAACCA); see also S000492 (BoxL core of DC PAL);
XX
KW L4; PAL;
XX
OS Daucus carota (carrot)
XX
RA Takeda J, Ito Y, Maeda K, Ozeki Y.
RT Assignment of UVB-responsive cis-element and
RT protoplastization-(dilution-) and elicitor-responsive ones in the
RT promoter region of a carrot phenylalanine ammonia-lyase gene
RT (gDcPAL1).
RL Photochem Photobiol. 76:232-238 (2002).
RD PubMed: 12194222
XX
SQ
AATCTCCAACCA
//
ID LBOXLERBCS
XX
AC S000126
XX
DT 17-May-1998 (last modified) kehi
XX
DE "L box"; Conserved sequence found in rbcS upstream sequences of
DE both tomato (L.e.) and tobacco;
XX
KW L box; rbcS; leaf; shoot;
XX
OS tomato (Lycopersicon esculentum); tobacco (Nicotiana tabacum);
XX
RA Giuliano G, Pichersky E, Malik VS, Timko MP, Scolnik PA, Cashmore
RA AR
RT An evolutionarily conserved protein binding sequence upstream of
RT a plant light-regulated gene.
RL Proc Natl Acad Sci USA 85:7089-7093 (1988)
RD PubMed: 2902624;
XX
RA Donald RGK, Cashmore AR
RT Mutation of either G box or l box sequences profoundly affects
RT expression from the Arabidopsis rbcS-1A promoter.
RL EMBO J 9:1717-1726 (1990)
RD PubMed: 2347304;
XX
SQ
AAATTAACCAA
//
ID LEAFYATAG
XX
AC S000432
XX
DT 27-Jan-2004 (last modified) kehi
XX
DE Target sequence of LEAFY in the intron of AGAMOUS gene in
DE Arabidopsis; See Lohmann et al. Cell 105:793-803 (2003);
XX
KW LEAFY; AGAMOUS;
XX
OS Oryza sativa (rice); Arabidopsis thaliana;
XX
RA Kamiya N, Nagasaki H, Morikami A, Sato Y, Matsuoka M.
RT Isolation and characterization of a rice WUSCHEL-tyope homoebox
RT gene that is specifically expressed in the central cells of a
RT quiescent center in the root apical meristem.
RL Plant J. 35: 429-441 (2003)
RD PubMed: 12904206;
XX
SQ
CCAATGT
//
ID LECPLEACS2
XX
AC S000465
XX
DT 24-April-2005 (last modified) kehi
XX
DE Core element in LeCp (tomato Cys protease) binding cis-element
DE (from -715 to -675) in LeAcs2 gene;
XX
KW cysteine protease; ethylene; xylanase; ACS;
XX
OS Lycopersicon esculentum (tomato)
XX
RA Matarasso N, Schuster S, Avni A.
RT A novel plant cysteine protease has a dual function as a
RT regulator of 1-aminocyclopropane-1-carboxylic Acid synthase gene
RT expression.
RL Plant Cell. 17: 1205-1216. (2005)
RD PubMed: 15749766
XX
SQ
TAAAATAT
//
ID LEGUMINBOXLEGA5
XX
AC S000060
XX
DT 17-May-1998 (last modified) kehi
XX
DE "legumin box" in legA 5' legumin gene promoter in legumin;
XX
KW legumin; pea; tobacco; promoter; seed;
XX
OS pea (Pisum sativum); tobacco (Nicotiana tabacum); Vicia faba;
XX
RA Baumlein H, Wobus U, Pustell J, Kafatos FC
RT The legumin gene family: structure of a B type gene of Vicia faba
RT and a possible legumin gene specific regulatory element.
RL Nucleic Acids Res 14:2707-2720 (1986)
RD PubMed: 3960730; GenBank: X03677;
XX
RA Shirsat A, Wilford N, Croy R, Boulter D
RT Sequences responsible for the tissue specific promoter activity
RT of a pea legumin gene in tobacco.
RL Mol Gen Genet 215:326-331 (1989)
RD PubMed: 2710102;
XX
SQ
TCCATAGCCATGCAWRCTGMAGAATGTC
//
ID LREBOX2PSRBCS3
XX
AC S000061
XX
DT 11-May-2006 (last modified) kehi
XX
DE "LRE (light-responsive element) Box II" of pea (P.s.) rbcS-3A
DE gene; GT-1 binding; "GT-motif"; "GT1 motif"; Some similarity to
DE SV40 enhancer core sequence; For a compilation of related GT
DE elements and factors, see Villain et al. (1996); "BoxII" Binding
DE site of transcriptional factor GTI; Located at -152 to -138;
DE Confers light responsiveness;
XX
KW light; rbcS; GT-1; GT1; enhancer; core; Box II; LRE; GT element;
KW leaf; shoot;
XX
OS pea (Pisum sativum); Arabidopsis thaliana;
XX
RA Green PJ, Kay SA, Chua N-H
RT Sequence-specific interactions of a pea nuclear factor with
RT light-responsive elements upstream of the rbcS-3A gene.
RL EMBO J 6:2543-2549 (1987)
RD PubMed: 3678200;
XX
RA Kuhlemeier C, Green PJ, Chua N-H
RT Regulation of gene expression in higher plants
RL Ann Rev Plant Physiol 38:221-257 (1987)
RC Review
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Chattopadhyay S, Puente P, Deng X-W, Wei N
RT Combinatorial interaction of ligth-responsive elements plays a
RT critical role in determining the response characteristics of
RT ligth-regulated promoters in Arabidopsis
RL Plant J 15:69-77 (1998)
RD PubMed: 9744096;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
XX
RA Lam E, Chua NH
RT GT-1 binding site confers light responsive expression in
RT transgenic tobacco
RL Science 248: 471-474 (1990)
RD PubMed: 2330508
XX
SQ
TGTGTGGTTAATATG
//
ID LREBOX3PSRBCS3
XX
AC S000062
XX
DT 17-May-1998 (last modified) kehi
XX
DE "LRE (light-responsive element) Box III" of pea (P.s.) rbcS-3A
DE gene; GT-1 binding; For a compilation of related GT elements and
DE factors, see Villain et al. (1996);
XX
KW light; rbcS; GT-1; leaf; shoot;
XX
OS pea (Pisum sativum)
XX
RA Green PJ, Kay SA, Chua N-H
RT Sequence-specific interactions of a pea nuclear factor with
RT light-responsive elements upstream of the rbcS-3A gene.
RL EMBO J 6:2543-2549 (1987)
RD PubMed: 3678200;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
SQ
ACTATTTTCACTATC
//
ID LREBOXIIPCCHS1
XX
AC S000303
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "BoxII"; Light responsive element (LRE) found in the parsley
DE (P.c.) CHS-1 (chalcone synthase-1) gene promoter; Required for
DE light responsiveness; nuclear protein binding site; Highly
DE conserved in various light inducible gene promoters; See
DE S000302;
XX
KW chalcone synthase; CHS; light; Box II; LRE; leaf; shoot;
XX
OS parsley (Petroselinum crispum)
XX
RA Schulze-Lefert P, Dangl JL, Becker-Andre M, Hahlbrock K, Schulz
RA W
RT Inducible in vivo DNA footprints define sequences necessary for
RT UV light activation of the parsley chalcon sythase gene
RL EMBO J 8: 651-656 (1989)
RD PubMed: 2566481
XX
SQ
TCCACGTGGC
//
ID LREBOXIPCCHS1
XX
AC S000302
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "BoxI"; Light responsive element (LRE) found in the parsley
DE (P.c.) CHS-1 (chalcone synthase-1) gene promoter; Required for
DE light responsiveness; nuclear protein binding site; See S000303;
DE "MRECHS" (MRE=Myb Recognition Element)Recognition site of MYB305
DE and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains
DE only one MYB repeat;
XX
KW chalcone synthase; CHS; light; Box I; LRE; PcMYB1; MRECHS; MYB;
KW leaf; shoot;
XX
OS parsley (Petroselinum crispum)
XX
RA Schulze-Lefert P, Dangl JL, Becker-Andre M, Hahlbrock K, Schulz
RA W
RT Inducible in vivo DNA footprints define sequences necessary for
RT UV light activation of the parsley chalcone synthase gene
RL EMBO J 8: 651-656 (1989)
RD PubMed: 2566481
XX
RA Feldbrugge M, Sprenger M, Hahlbrock K, Weisshaar B
RT PcMYB1, a novel plant protein containing a DNA-binding domain
RT with one MYB repeat, interacts in vivo with a light-regulatory
RT promoter unit
RL Plant J (1997) 11: 1079-1093
RD PubMed: 9193077;
XX
SQ
AACCTAACCT
//
ID LRENPCABE
XX
AC S000231
XX
DT 17-May-1998 (last modified) kehi
XX
DE "LRE"; A positive light regulatory element in tobacco (N.p.) CAB
DE (cab-E) gene; Located at -241;
XX
KW CAB; cab; cab-E; CABE; light; leaf; shoot;
XX
OS tobacco (Nicotiana plumbaginifolia)
XX
RA Castresana C, Garcia-Luque I, Alonso E, Malik VS, Cashmore AR
RT Both positive and negative regulatory elements mediate expression
RT of a photoregulated CAB gene from Nicotiana plumbaginifolia
RL EMBO J 7:1929-1936 (1988)
RD PubMed: 2901343; GenBank: X12512;
XX
SQ
ACGTGGCA
//
ID LS5ATPR1
XX
AC S000323
XX
DT 04-January-2007 (last modified) kehi
XX
DE "LS5"; A negative regulatory element found in the Arabidopsis
DE (A.t.) PR-1 gene promoter; Binding site of TGA2; NPR1 increased
DE the binding of TGA2 to the element; NPR1 is essential in
DE activating systemic, inducible plant defense response; See
DE S000322; TGA6 expressed in roots in young seedlings; TGA2.1 is a
DE direct transcriptional activator; TGA2.2 stabilizes TGA2.1
DE binding; NOTE: The motif sequence previously shown was that of
DE LS7. The correction was made.
XX
KW TGA2; LS5; LS7; SA; NPR1; TGA6; auxin; salicylic acid; root;
XX
OS Arabidopsis thaliana; tobacco (Nicotiana tabacum);
XX
RA Despres C, DeLong C, Glaze S, Liu E, Fobert PR
RT The Arabidopsis NPR1/NIM1 protein enhances the DNA binding
RT activity of a subgroup of the TGA family of bZIP transcription
RT factors
RL Plant Cell 12: 279-290 (2000)
RD PubMed: 10662863;
XX
RA Xiang C, Miao Z, Lam E
RT DNA-binding properties, genomic organization and expression
RT pattern of TGA6,a new member of the TGA family of bZIP
RT transcription factors in Arabidopsis thaliana
RL Plant Mol Biol 34: 403-415 (1997)
RD PubMed: 9225852
XX
RA Niggeweg R, Thurow C, Weigel R, Pfitzner U, Gatz C
RT Tobacco TGA factors differ with respect to interaction with NPR1,
RT activation potential and DNA-binding properties.
RL Plant Mol Biol 42: 775-788 (2000)
RD PubMed: 10809449;
XX
RA Thurow C, Schiermeyer A, Krawczyk S, Butterbrodt T, Nickolov K,
RA Gatz C.
RT Tobacco bZIP transcription factor TGA2.2 and related factor
RT TGA2.1 have distinct roles in plant defense responses and plant
RT development.
RL Plant J. 44:100-113 (2005)
RD PubMed: 16167899
XX
SQ
TCTACGTCAC
//
ID LS7ATPR1
XX
AC S000322
XX
DT 04-January-2007 (last modified) kehi
XX
DE "LS7"; A positive salicylic acid-inducible element found in the
DE Arabidopsis (A.t.) PR-1 gene promoter; Binding site of TGA1; NPR1
DE increased the binding of TGA2 to the element; NPR1 is essential
DE in activating systemic, inducible plant defense responses; See
DE S000323; TGA6 expressed in roots in young seedlings; TGA2.1 is a
DE direct transcriptional activator; TGA2.2 stabilizes TGA2.1
DE binding; NOTE: The motif sequence previously shown was that of
DE LS5. The correction was made. We are very sorry.
XX
KW TGA2; LS5; LS7; SA; NPR1; TGA6; auxin; salicylic acid; root;
XX
OS Arabidopsis thaliana; tobacco (Nicotiana tabacum);
XX
RA Despres C, DeLong C, Glaze S, Liu E, Fobert PR
RT The Arabidopsis NPR1/NIM1 protein enhances the DNA binding
RT activity of a subgroup of the TGA family of bZIP transcription
RT factors
RL Plant Cell 12: 279-290 (2000)
RD PubMed: 10662863;
XX
RA Xiang C, Miao Z, Lam E
RT DNA-binding properties, genomic organization and expression
RT pattern of TGA6,a new member of the TGA family of bZIP
RT transcription factors in Arabidopsis thaliana
RL Plant Mol Biol 34: 403-415 (1997)
RD PubMed: 9225852
XX
RA Niggeweg R, Thurow C, Weigel R, Pfitzner U, Gatz C
RT Tobacco TGA factors differ with respect to interaction with NPR1,
RT activation potential and DNA-binding properties
RL Plant Mol Biol 42: 775-788 (2000)
RD PubMed: 10809449;
XX
RA Johnson C, Boden E, Arias J.
RT Salicylic acid and NPR1 induce the recruitment of
RT trans-activating TGA factors to a defense gene promoter in
RT Arabidopsis.
RL Plant Cell. 15:1846-1858 (2003)
RD PubMed: 12897257
XX
RA Thurow C, Schiermeyer A, Krawczyk S, Butterbrodt T, Nickolov K,
RA Gatz C.
RT Tobacco bZIP transcription factor TGA2.2 and related factor
RT TGA2.1 have distinct roles in plant defense responses and plant
RT development.
RL Plant J. 44:100-113 (2005)
RD PubMed: 16167899
XX
SQ
ACGTCATAGA
//
ID LTRE1HVBLT49
XX
AC S000250
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE "LTRE-1" (low-temperature-responsive element) in barley (H.v.)
DE blt4.9 gene promoter; A new LTRE; A previously known LTRE is
DE CCGAC;
XX
KW low temperature; LTRE;
XX
OS barley (Hordeum vulgare)
XX
RA Dunn MA, White AJ, Vural S, Hughes MA
RT Identification of promoter elements in a
RT low-temperature-responsive gene (blt4.9) from barley (Hordeum
RT vulgare L.)
RL Plant Mol Biol 38:551-564 (1998)
RD PubMed: 9747801;
XX
SQ
CCGAAA
//
ID LTREATLTI78
XX
AC S000157
XX
DT 17-May-1998 (last modified) kehi
XX
DE Putative low temperature responsive element (LTRE); Found in
DE Arabidopsis thaliana (A.t.) low-temperature-induced (lti) genes,
DE lti78 and lti65; Repeated four times in lti78 which is also
DE known as cor78 and rd29A (see S000152)(Baker et al., Plant Mol
DE Biol 24:701(1994)); Found also in barley low temperature
DE responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes);
DE cold inducible; See LTRECORE (S000153); Also present in rab18,
DE kin1, and kin2 (Nordin et al., 1993);
XX
KW low temperature responsive element; LTRE; cold; leaf; shoot;
XX
OS Arabidopsis thaliana; barley (Hordeum vulgare);
XX
RA Nordin K, Vahala T, Palva ET
RT Differential expression of two related, low-temperature-induced
RT genes in Arabidopsis thaliana (L.) Heynh.
RL Plant Mol Biol 21:641-653 (1993)
RC Consensus sequence among 2 genes;
RD PubMed: 8448363; GenBank: X67670, X67671;
XX
RA White AJ, Dunn MA, Brown K, Hughes MA
RT Comparative analysis of genomic sequence and expression of a
RT lipid transfer protein gene family in winter barley.
RL J Exp Bot 45:1885-1892 (1994)
XX
SQ
ACCGACA
//
ID LTRECOREATCOR15
XX
AC S000153
XX
DT 8-February-2006 (last modified) kehi
XX
DE Core of low temperature responsive element (LTRE) of cor15a gene
DE in Arabidopsis (A.t.); A portion of repeat-C (C-repeat),
DE TGGCCGAC, which is repeated twice in cor15a promoter (Baker et
DE al., 1994); ABA responsiveness; Involved in cold induction of
DE BN115 gene from winter Brassica napus; LTRE; See S000157,
DE S000152; Light signaling mediated by phytochrome is necessary for
DE cold- or drought- induced gene expression through the C/DRE in
DE Arabidopsis; See S000152;
XX
KW low temperature; cold; LTRE; drought; ABA; cor15a; BN115; leaf;
KW shoot; phytochrome;
XX
OS Arabidopsis thaliana; Brassica napus
XX
RA Baker SS, Wilhelm KS, Thomashow MF
RT The 5'-region of Arabidopsis thaliana cor15a has cis-acting
RT elements that confer cold-, drought- and ABA-regulated gene
RT expression.
RL Plant Mol Biol 24:701-713 (1994)
RD PubMed: 8193295; GenBank: U01377;
XX
RA Jiang C, Iu B, Singh J
RT Requirement of a CCGAC cis-acting element for cold induction of
RT the BN115 gene from winter Brassica napus
RL Plant Mol Biol 30:679-684 (1996)
RD PubMed: 8605318;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
RA Kim HJ, Kim YK, Park JY, Kim J
RT Light signalling mediated by phytochrome plays an important role
RT in cold-induced gene expression through the C-repeat/dehydration
RT responsive element (C/DRE) in Arabidopsis thaliana
RL Plant J 29: 693-704 (2002)
RD PubMed: 12148528;
XX
SQ
CCGAC
//
ID MARABOX1
XX
AC S000063
XX
DT 13-Feb-2001 (last modified) kehi
XX
DE "A-box" found in SAR(scaffold attachment region; or matrix
DE attachment region, MAR);
XX
KW MAR; SAR; matrix; A-box; scaffold;
XX
OS Drosophila; fly;
XX
RA Gasser SM, Amati BB, Cardenas ME, Hofmann JFX
RT Studies on scaffold attachment sites and their relation to genome
RT function.
RL Intnatl Rev Cyto 119:57-96 (1989)
RC Review
RD PubMed: 2695485;
XX
SQ
AATAAAYAAA
//
ID MARARS
XX
AC S000064
XX
DT 16-Jan-1998 (last modified) kehi
XX
DE "ARS element"; Motif found in SAR (MAR);
XX
KW MAR; SAR; ARS;
XX
OS yeast
XX
RA Gasser SM, Amati BB, Cardenas ME, Hofmann JFX
RT Studies on scaffold attachment sites and their relation to genome
RT function.
RL Intnatl Rev Cyto 119:57-96 (1989)
RC Review
RD PubMed: 2695485;
XX
SQ
WTTTATRTTTW
//
ID MARCEN3
XX
AC S000065
XX
DT 16-Jan-1998 (last modified) kehi
XX
DE "CEN III element"; Motif found in SAR (MAR); centromere element;
XX
KW MAR; SAR; ARS; CEN; centromere;
XX
OS yeast
XX
RA Gasser SM, Amati BB, Cardenas ME, Hofmann JFX
RT Studies on scaffold attachment sites and their relation to genome
RT function.
RL Intnatl Rev Cyto 119:57-96 (1989)
RC Review
RD PubMed: 2695485;
XX
SQ
TGTTTWTGNTTTCCGAAANNNNWWW
//
ID MARTBOX
XX
AC S000067
XX
DT 13-Feb-2001 (last modified) kehi
XX
DE "T-Box"; Motif found in SAR (scaffold attachment region; or
DE matrix attachment region, MAR);
XX
KW MAR; SAR; T-box; scaffold; matrix;
XX
OS Drosophila; fly;
XX
RA Gasser SM, Amati BB, Cardenas ME, Hofmann JFX
RT Studies on scaffold attachment sites and their relation to genome
RT function.
RL Intnatl Rev Cyto 119:57-96 (1989)
RC Review
RD PubMed: 2695485;
XX
SQ
TTWTWTTWTT
//
ID MEJARELELOX
XX
AC S000151
XX
DT 17-May-1998 (last modified) kehi
XX
DE MeJa-responsive element (MeJaRE) in tomato (L. e.) lipoxygenase
DE (LOX) gene; Related to tomato lipoxygenase gene expression during
DE development and for MeJa (methyl jasmonate)-responsiveness;
XX
KW lipoxygenase; lox; methyl jasmonate; shoot; leaf;
XX
OS tomato (Lycopersicon esculentum);
XX
RA Beaudoin N, Rothstein SJ
RT Developmental regulation of two tomato lipoxygenase promoters in
RT transgenic tobacco and tomato.
RL Plant Mol Biol 33:835-846 (1997)
RD PubMed: 9106507; GenBank: U63117, U63118;
XX
SQ
GATACANNAATNTGATG
//
ID MNF1ZMPPC1
XX
AC S000251
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE "MNF1" binding site in maize (Z.m.) Ppc1 (phosphoenolpyruvate
DE carboxylase) gene promoter; Involved in light induction;
XX
KW MNF1; Ppc1; light; leaf; shoot;
XX
OS maize (Zea mays)
XX
RA Morishima A
RT Identification of preferred binding sites of a light-inducible
RT DNA-binding factor (MNF1) within 5'-upstream sequence of C4-type
RT phosphoenolpyruvate carboxylase gene in maize
RL Plant Mol Biol 38:633-646 (1998)
RD PubMed: 9747808;
XX
SQ
GTGCCCTT
//
ID MREATCHS
XX
AC S000356
XX
DT 02-August-2006 (last modified) kehi
XX
DE "MREAtCHS (MRE = Myb Recognition Element)" found in the LRU
DE (light-responsive unit) in Arabidopsis (A.t.) chalcone synthase
DE (CHS) gene promoter; Required for UV-B and UV-A/blue light
DE responsiveness; See S000355;
XX
KW CHS; ACE; MYB; light; UV-A; UV-B; leaf; shoot; MRE;
XX
OS Arabidopsis thaliana
XX
RA Hartmann U, Valentine WJ, Christie JM, Hays J, Jenkins GI,
RA Weisshaar B
RT Identification of UV/blue light-response elements in the
RT Arabidopsis thaliana chalcone synthase promoter using a
RT homologous protoplast transient expression system
RL Plant Mol Biol (1998) 36: 741-754
RD PubMed: 9526507;
XX
RA Hartmann U, Sagasser M, Mehrtens F, Stracke R, Weisshaar B.
RT Differential combinatorial interactions of cis-acting elements
RT recognized by R2R3-MYB, BZIP, and BHLH factors control
RT light-responsive and tissue-specific activation of
RT phenylpropanoid biosynthesis genes.
RL Plant Mol Biol. 57: 155-171 (2005).
RD PubMed: 15821875
XX
SQ
TCTAACCTACCA
//
ID MRNA3ENDTAH3
XX
AC S000069
XX
DT 17-May-1998 (last modified) kehi
XX
DE Cis element in 3' end region of wheat (T.a.) histone H3 mRNA; 3'
DE end formation; Also found in histone genes of other plants,
DE yeast, etc;
XX
KW histone H3; mRNA; 3' end formation; meristem;
XX
OS wheat (Triticum aestivum); yeast;
XX
RA Ohtsubo N, Iwabuchi M
RT The conserved 3'-flanking sequence, AATGGAAATG, of the wheat
RT histone H3 gene is necessary for the accurate 3'-end formation of
RT mRNA.
RL Nucleic Acids Res 22:1052-1058 (1994)
RD PubMed: 8152910;
XX
SQ
AATGGAAATG
//
ID MRNASTA1CRPSBD
XX
AC S000274
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE mRNA stability determinant found in 5'-UTR of psbD mRNA of
DE Chlamydomonas reinhardtii (C.r.); Required for the stable
DE accumulation; Located within the first 12 nucleotides of the
DE leader region;
XX
KW mRNA; stability; chloroplast; 5'-UTR; psbD;
XX
OS Chlamydomonas reinhardtii
XX
RA Nickelsen J, Fleischmann M, Boudreau E, Rahire M, Rochaix JD
RT Identification of cis-acting RNA leader elements required for
RT chloroplast psbD gene expression in Chlamydomonas
RL Plant Cell 11:957-970 (1999)
RD PubMed: 10330479;
XX
SQ
CUCUUTGUTTUU
//
ID MRNASTA2CRPSBD
XX
AC S000275
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE mRNA stability determinant found in 5'-UTR of psbD mRNA of
DE Chlamydomonas reinhardtii (C.r.); Required for the stable
DE accumulation; Located near position -30 relative to the AUG
DE initiation codon;
XX
KW mRNA; stability; chloroplast; 5'-UTR; psbD;
XX
OS Chlamydomonas reinhardtii
XX
RA Nickelsen J, Fleischmann M, Boudreau E, Rahire M, Rochaix JD
RT Identification of cis-acting RNA leader elements required for
RT chloroplast psbD gene expression in Chlamydomonas
RL Plant Cell 11:957-970 (1999)
RD PubMed: 10330479;
XX
SQ
UGAGUUG
//
ID MSACRCYM
XX
AC S000236
XX
DT 17-May-1998 (last modified) kehi
XX
DE "MSA (M-specific activator)" motif in Catharanthus roseus (C.r.)
DE B-type cyclin (CYM) promoter; Essential for M phase-specific
DE expression; Found at -66 to -58;
XX
KW M phase; cyclin; CYM; meristem;
XX
OS Catharanthus roseus
XX
RA Ito M, Iwase M, Kodama H, Lavisse P, Komamine A, Nishihama R,
RA Machida Y, Watanabe A
RT A novel cis-acting element in promoters of plant B-type cyclin
RT genes activates M phase-specific transcription
RL Plant Cell 10:331-341 (1998)
RD PubMed: 9501108;
XX
SQ
AGACCGTTG
//
ID MYB1AT
XX
AC S000408
XX
DT 03-Jun-2003 (last modified) kehi
XX
DE MYB recognition site found in the promoters of the
DE dehydration-responsive gene rd22 and many other genes in
DE Arabidopsis; W=A/T;
XX
KW MYB; rd22BP1; ABA; leaf; seed; stress;
XX
OS Arabidopsis thaliana
XX
RA Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki
RA K.
RT Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as
RT transcriptional activators in abscisic acid signaling.
RL Plant Cell 15: 63-78 (2003)
RD PubMed: 12509522;
XX
SQ
WAACCA
//
ID MYB1LEPR
XX
AC S000443
XX
DT 28-Jan-2004 (last modified) kehi
XX
DE Tomato Pti4(ERF) regulates defence-related gene expression via
DE GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box
DE (CACGTG));
XX
KW Pti4; ERF; PR; MYB;
XX
OS Arabidopsis thaliana; Lycopersicon esculentum (tomato);
XX
RA Chakravarthy S, Tuori RP, DAscenzo MD, Fobert PR, Despres C,
RA Martin GB
RT The tomato transcription factor Pti4 regulates defence-related
RT gene expression via GCC box and non-GCC box cis elements
RL Plant Cell 15: 3033-3050 (2003)
RD PubMed: 14630974;
XX
SQ
GTTAGTT
//
ID MYB26PS
XX
AC S000182
XX
DT 17-May-1998 (last modified) kehi
XX
DE Myb26 binding site; Myb26 recognizes the c-Myb and P-box-like
DE binding sites representing cis-elements in the promoter regions
DE of several phenylpropanoid biosynthetic genes; Identical to P-box
DE in maize, and to Myb305 binding site in snapdragon;
XX
KW MYB; myb; Myb; myb26; P-box; P box; flower;
XX
OS pea (Pisum sativum)
XX
RA Uimari A, Strommer J
RT Myb26: a MYB-like protein of pea flowers with affinity for
RT promoters of phenylpropanoid genes
RL Plant J 12:1273-1284 (1997)
RD PubMed: 9450341;
XX
SQ
GTTAGGTT
//
ID MYB2AT
XX
AC S000177
XX
DT 16-May-2001 (last modified) uchi
XX
DE Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2
DE binds oligonucleotides that contained a consensus MYB recognition
DE sequence (TAACTG), such as is in the SV40 enhancer and the maize
DE bronze-1 promoter (Urao et al., Plant Cell 5:1529 (1993)); ATMYB2
DE is involved in regulation of genes that are responsive to water
DE stress in Arabidopsis; See S000355;
XX
KW MYB; myb; SV40; enhancer; bronze; bronze-1; leaf; shoot;
XX
OS Arabidopsis thaliana;
XX
RA Urao T, Yamaguchi-Shinozaki K, Urao S, Shinozaki K
RT An Arabidopsis myb homolog is induced by dehydration stress and
RT its gene product binds to the conserved MYB recognition sequence
RL Plant Cell 5:1529-1539 (1993)
RD PubMed: 8312738; GenBank: D14712;
XX
SQ
TAACTG
//
ID MYB2CONSENSUSAT
XX
AC S000409
XX
DT 03-Jun-2003 (last modified) kehi
XX
DE MYB recognition site found in the promoters of the
DE dehydration-responsive gene rd22 and many other genes in
DE Arabidopsis; Y=C/T; K=G/T; See S000177 (MYB2), S000175
DE (MYBATRD22);
XX
KW MYB; rd22BP1; ABA; leaf; seed; stress;
XX
OS Arabidopsis thaliana
XX
RA Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki
RA K.
RT Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as
RT transcriptional activators in abscisic acid signaling.
RL Plant Cell 15: 63-78 (2003)
RD PubMed: 12509522;
XX
SQ
YAACKG
//
ID MYBATRD22
XX
AC S000175
XX
DT 16-May-2001 (last modified) uchi
XX
DE Binding site for MYB (ATMYB2) in dehydration-responsive gene,
DE rd22; MYB binding site in rd22 gene of Arabidopsis thaliana;
DE ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca.
DE -200 of rd22 gene; See S000174 (MYCATRD22); See S000355;
XX
KW Dehydration; Water stress; ABA; MYC; leaf; shoot;
XX
OS Arabidopsis thaliana
XX
RA Abe H, Yamaguchi-Shinozaki k, Urao T, Iwasaki T, Hosokawa D,
RA Shinozaki K
RT Role of Arabidopsis MYC and MYB homologs in drought- and abscisic
RT acid-regulated gene expression.
RL Plant Cell 9:1859-1868 (1997)
RD PubMed: 9368419;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
CTAACCA
//
ID MYBCORE
XX
AC S000176
XX
DT 16-May-2001 (last modified) uchi
XX
DE Binding site for all animal MYB and at least two plant MYB
DE proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis;
DE ATMYB2 is involved in regulation of genes that are responsive to
DE water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is
DE involved in regulation of flavonoid biosynthesis (Solano et al.
DE EMBO J 14:1773 (1995)); See S000355;
XX
KW MYB; myb; dehydration; water; stress; flavonoid biosynthesis;
KW leaf; shoot;
XX
OS Arabidopsis thaliana; animal; petunia (Petunia hybrida);
XX
RA Luscher B, Eiseman RN
RT New light on Myc and Myb. Part II. Myb.
RL Genes Dev. 4:2235-2241 (1990)
RC Review
RD PubMed: 2279697;
XX
RA Urao T, Yamaguchi-Shinozaki K, Urao S, Shinozaki K
RT An Arabidopsis myb homolog is induced by dehydration stress and
RT its gene product binds to the conserved MYB recognition sequence
RL Plant Cell 5:1529-1539 (1993)
RD PubMed: 8312738; GenBank: D14712;
XX
RA Solano R, Nieto C, Avila J, Canas L, Diaz I, Paz-Ares J
RT Dual DNA binding specificity of a petal epidermis-specific MYB
RT transcription factor (MYB.Ph3) from Petunia hybrida
RL EMBO J 14:1773-1784 (1995)
RD PubMed: 7737128;
XX
SQ
CNGTTR
//
ID MYBCOREATCYCB1
XX
AC S000502
XX
DT 15-September-2006 (last modified) kehi
XX
DE "Myb core" in the 18 bp sequence which is able to activate
DE reporter gene without leading to M-phase-specific expression,
DE found in the promoter of Arabidopsis thaliana cyclin B1:1 gene;
DE the 18 bp sequence share homology with a sequence found in the N.
DE sylvestris cyclin B1 promoter (Trehin et al., 1999; see
DE S000283):
XX
KW Cyc; M phase; Myb;
XX
OS Arabidopsis thaliana
XX
RA Planchais S, Perennes C, Glab N, Mironov V, Inze D, Bergounioux
RA C.
RT Characterization of cis-acting element involved in cell cycle
RT phase-independent activation of Arath;CycB1;1 transcription and
RT identification of putative regulatory proteins.
RL Plant Mol Biol. 50:111-127 (2002).
RD PubMed: 12139003
XX
SQ
AACGG
//
ID MYBGAHV
XX
AC S000181
XX
DT 15-September-2006 (last modified) kehi
XX
DE Central element of gibberellin (GA) response complex (GARC) in
DE high-pI alpha-amylase gene in barley (H.v.); Similar to c-myb and
DE v-myb consensus binding site; GAmyb binds specifically to the
DE TAACAAA box in vitro; GAmyb is the sole GA-regulated
DE transcriptional factor required for transcriptional activation of
DE the high-pI alpha-amylase; GARC consist of the pyrimidine,
DE TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and
DE pyrimidine box in RAmy1A are partially involved in sugar
DE repression;
XX
KW myb; Myb; GAmyb; GA; gibberellin; GARC; alph-amylase; amylase;
KW aleurone; GARE; seed;
XX
OS barley (Hordeum vulgare); rice (Oryza sativa);
XX
RA Gubler F, Kalla R, Roberts JK, Jacobsen JV
RT Gibberellin-regulated expression of a myb gene in barley aleurone
RT cells: evidence for Myb transactivation of a high-pl
RT alpha-amylase gene promoter
RL Plant Cell 7:1879-1891 (1995)
RD PubMed: 8535141;
XX
RA Morita A, Umemura T, Kuroyanagi M, Futsuhara Y, Perata P,
RA Yamaguchi J
RT Functional dissection of a sugar-repressed alpha-amylase gene
RT (Ramy1A) promoter in rice embryos
RL FEBS Lett 423:81-85 (1998)
RD PubMed: 9506846;
XX
RA Gubler F, Raventos D, Keys M, Watts R, Mundy J, Jacobsen JV.
RT Target genes and regulatory domains of the GAMYB transcriptional
RT activator in cereal aleurone.
RL Plant J. 17:1-9(1999).
RD PubMed: 10069063
XX
SQ
TAACAAA
//
ID MYBPLANT
XX
AC S000167
XX
DT 16-May-2001 (last modified) uchi
XX
DE Plant MYB binding site; Consensus sequence related to box P in
DE promoters of phenylpropanoid biosynthetic genes such as PAL, CHS,
DE CHI, DFR, CL, Bz1; Myb305; M=A/C; W=A/T; See S000355; The
DE AmMYB308 and AmMYB330 transcription factors from Antirrhinum
DE majus regulate phenylpropanoid and lignin biosynthesis in
DE transgenic tobacco;
XX
KW Myb; MYB; Myb305; AmMYB308; AmMYB330; flower; PAL; CHS; DFR;
KW Candi; Bz1; phenylpropanoid; lignin; leaf; shoot;
XX
OS snapdragon (Antirrhinum majus); bean (Phaseolus vulgaris);
OS petunia (Petunia hybrida); Arabidopsis thaliana; maize (Zea
OS mays); parsley (Petroselinum crispum);
XX
RA Sablowski RWM, Moyano E, Culianez-Macia FA, Schuch W, Martin C,
RA Bevan M
RT A flower-specific Myb protein activates transcription of
RT phenylpropanoid biosynthetic genes.
RL EMBO J 13:128-137 (1994)
RD PubMed: 8306956;
XX
RA Tamagnone L, Merida A, Parr A, Mackay S, Culianez-Macia FA,
RA Roberts K, Martin C
RT The AmMYB308 and AmMYB330 transcription factors from antirrhinum
RT regulate phenylpropanoid and lignin biosynthesis in transgenic
RT tobacco
RL Plant Cell 10: 135-154 (1998)
RD PubMed: 9490739;
XX
SQ
MACCWAMC
//
ID MYBPZM
XX
AC S000179
XX
DT 17-May-1998 (last modified) kehi
XX
DE Core of consensus maize P (myb homolog) binding site; W=A/T; 6 bp
DE core; Maize P gene specifies red pigmentation of kernel pericarp,
DE cob, and other floral organs; P binds to A1 gene, but not Bz1
DE gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes
DE (Grotewold et al. 1994); W=A/T;
XX
KW P; P gene: P-gene; MYB; myb; seed;
XX
OS maize (Zea mays);
XX
RA Grotewold E, Drummond BJ, Bowen B, Peterson T
RT The myb-homologous P gene controls phlobaphene pigmentation in
RT maize floral organs by directly activating a flavonoid
RT biosynthetic gene subset
RL Cell 76:543-553 (1994)
RD PubMed: 8313474;
XX
SQ
CCWACC
//
ID MYBST1
XX
AC S000180
XX
DT 17-Apr-1998 (last modified) kehi
XX
DE Core motif of MybSt1 (a potato MYB homolog) binding site; MybSt1
DE cDNA clone was isolated by using CaMV 35S promoter domain A as a
DE probe (Baranowskij et al. 1994); The Myb motif of the MybSt1
DE protein is distinct from the plant Myb DNA binding domain
DE described so far;
XX
KW MYB; myb; Myb;
XX
OS potato (Solanum tuberosum);
XX
RA Baranowskij N, Frohberg C, Prat S, Willmitzer L
RT A novel DNA binding protein with homology to Myb oncoproteins
RT containing only one repeat can function as a transcriptional
RT activator
RL EMBO J 13:5383-5392 (1994)
RD PubMed: 7957104;
XX
SQ
GGATA
//
ID MYCATERD1
XX
AC S000413
XX
DT 29-November-2004 (last modified) kehi
XX
DE MYC recognition sequence (from -466 to -461) necessary for
DE expression of erd1 (early responsive to dehydration) in
DE dehydrated Arabidopsis; NAC protein bound specifically to the
DE CATGTG motif (Tran et al., 2004)); NAC protein bound specifically
DE to the CATGTG motif (Tran et al., 2004);
XX
KW water-stress; erd;
XX
OS Arabidopsis thaliana
XX
RA Simpson SD, Nakashima K, Narusaka Y, Seki M, Shinozaki K,
RA Yamaguchi-Shinozaki K.
RT Two different novel cis-acting elements of erd1, a clpA
RT homologous Arabidopsis gene function in induction by dehydration
RT stress and dark-induced senescence.
RL Plant J. 33: 259-270 (2003)
RD PubMed: 12535340;
XX
RA Tran LS, Nakashima K, Sakuma Y, Simpson SD, Fujita Y, Maruyama K,
RA Fujita M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K.
RT Isolation and functional analysis of arabidopsis stress-inducible
RT NAC transcription factors that bind to a drought-responsive
RT cis-element in the early responsive to dehydration stress 1
RT promoter.
RL Plant Cell. 16: 2481-2498 (2004).
RD PubMed: 15319476
XX
SQ
CATGTG
//
ID MYCATRD22
XX
AC S000174
XX
DT 29-Sep-1999 (last modified) kehi
XX
DE Binding site for MYC (rd22BP1) in Arabidopsis (A.t.)
DE dehydration-resposive gene, rd22; MYC binding site in rd22 gene
DE of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of
DE rd22 gene; Also MYB at ca. -141 of rd22 gene; See also S000175
DE (MYBATRD22);
XX
KW Dehydration; Water stress; ABA; MYC; myc; leaf; shoot;
XX
OS Arabidopsis thaliana
XX
RA Abe H, Yamaguchi-Shinozaki K, Urao T, Iwasaki T, Hosokawa D,
RA Shinozaki K
RT Role of Arabidopsis MYC and MYB homologs in drought- and abscisic
RT acid-regulated gene expression.
RL Plant Cell 9:1859-1868 (1997)
RD PubMed: 9368419;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810;
XX
SQ
CACATG
//
ID MYCCONSENSUSAT
XX
AC S000407
XX
DT 04-January-2007 (last modified) kehi
XX
DE MYC recognition site found in the promoters of the
DE dehydration-responsive gene rd22 and many other genes in
DE Arabidopsis; Binding site of ATMYC2 (previously known as
DE rd22BP1); see S000144 (E-box; CANNTG), S000174 (MYCATRD22);
DE N=A/T/G/C; MYC recognition sequence in CBF3 promoter; Binding
DE site of ICE1 (inducer of CBF expression 1) that regulates the
DE transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1
DE (Chinnusamy et al., 2004);) This sequence is also known as RRE (R
DE response element)(Hartmann et al., 2005);
XX
KW MYC; rd22BP1; ABA; leaf; seed; stress; CBF3; cold; CBF/DREB1;
KW ICE1; RRE;
XX
OS Arabidopsis thaliana
XX
RA Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki
RA K.
RT Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as
RT transcriptional activators in abscisic acid signaling.
RL Plant Cell 15: 63-78 (2003)
RD PubMed: 12509522;
XX
RA Chinnusamy V, Ohta M, Kanrar S, Lee BH, Hong X, Agarwal M, Zhu
RA JK.
RT ICE1: a regulator of cold-induced transcriptome and freezing
RT tolerance in Arabidopsis.
RL Genes Dev. 17: 1043-1054 (2003)
RD PubMed: 12672693;
XX
RA Chinnusamy V, Schumaker K, Zhu JK.
RT Molecular genetic perspectives on cross-talk and specificity in
RT abiotic stress signalling in plants.
RL J Exp Bot. 55: 225-236 (2004).
RC Review.
RD PubMed: 14673035
XX
RA Oh SJ, Song SI, Kim YS, Jang HJ, Kim SY, Kim M, Kim YK, Nahm BH,
RA Kim JK.
RT Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased
RT tolerance to abiotic stress without stunting growth.
RL Plant Physiology 138: 341-351 (2005)
RD PubMed: 15834008
XX
RA Lee BH, Henderson DA, Zhu JK.
RT The Arabidopsis Cold-Responsive Transcriptome and Its Regulation
RT by ICE1.
RL Plant Cell. 17: 3155-3175 (2005)
RD PubMed: 16214899
XX
RA Hartmann U, Sagasser M, Mehrtens F, Stracke R, Weisshaar B.
RT Differential combinatorial interactions of cis-acting elements
RT recognized by R2R3-MYB, BZIP, and BHLH factors control
RT light-responsive and tissue-specific activation of
RT phenylpropanoid biosynthesis genes.
RL Plant Mol Biol. 57: 155-171(2005).
RD PubMed: 15821875
XX
RA Agarwal M, Hao Y, Kapoor A, Dong CH, Fujii H, Zheng X, Zhu JK.
RT A R2R3 type MYB transcription factor is involved in the cold
RT regulation of CBF genes and in acquired freezing tolerance.
RL J Biol Chem. 281:37636-37645 (2006)
RD PubMed: 17015446
XX
SQ
CANNTG
//
ID NAPINMOTIFBN
XX
AC S000070
XX
DT 17-May-1998 (last modified) kehi
XX
DE Sequence found in 5' upstream region (-6, -95, -188) of napin (2S
DE albumin) gene in Brassica napus (B.n.); Interact with a protein
DE present in crude nuclear extracts from developing B. napus
DE seeds;
XX
KW napin; 2S albumin; seed; storage protein;
XX
OS rape (Brassica napus)
XX
RA Ericson ML, Muren E, Gustavsson H-O, Josefsson L-G, Rask L
RT Analysis of the promoter region of napin genes from Brassica
RT napus demonstrates binding of nuclear protein in vitro to a
RT conserved sequence motif.
RL Eur J Biochem 197:741-746 (1991)
RD PubMed: 2029903; GenBank: X58142;
XX
SQ
TACACAT
//
ID NDEGMSAUR
XX
AC S000359
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "NDE" found in Soybean (G.m.) SAUR (Small Auxin-Up RNA) 15A gene
DE promoter; Required for auxin responsiveness; Contains two
DE adjacent sequences, TGTCTC (see S000270) and GGTCCCAT, which have
DE been previously identified as putative auxin-responsive elements;
DE See S000360;
XX
KW NDE; SAUR; Auxin;
XX
OS Soybean (Glycine max)
XX
RA Li Y, Liu ZB, Shi X, Hagen G, Guilfoyle TJ
RT An auxin-inducible element in soybean SAUR promoters
RL Plant Physiol 106:37-43 (1994)
RD PubMed: 7972520;
XX
SQ
CCATATGCCATGTCTCTCAATTGGTCCCAT
//
ID NODCON1GM
XX
AC S000461
XX
DT 24-April-2005 (last modified) kehi
XX
DE One of two putative nodulin consensus sequences; See also S000462
DE (NODCON2GM);
XX
KW nodulin
XX
OS Glycine max (soybean)
XX
RA Sandal NN, Bojsen K, Marcker KA.
RT A small family of nodule specific genes from soybean.
RL Nucleic Acids Res. 15:1507-1519 (1987).
RC consesus; in silico;
RD PubMed: 3822835
XX
RA Stougaard J, Jorgensen JE, Christensen T, Kuhle A, Marcker KA.
RT Interdependence and nodule specificity of cis-acting regulatory
RT elements in the soybean leghemoglobin lbc3 and N23 gene
RT promoters.
RL Mol Gen Genet. 220: 353-360 (1990).
RD PubMed: 2338938
XX
SQ
AAAGAT
//
ID NODCON2GM
XX
AC S000462
XX
DT 24-April-2005 (last modified) kehi
XX
DE One of two putative nodulin consensus sequences; See also S000461
DE (NODCON1GM);
XX
KW nodulin
XX
OS Glycine max (soybean)
XX
RA Sandal NN, Bojsen K, Marcker KA.
RT A small family of nodule specific genes from soybean.
RL Nucleic Acids Res. 15:1507-1519 (1987).
RC consesus; in silico;
RD PubMed: 3822835
XX
RA Stougaard J, Jorgensen JE, Christensen T, Kuhle A, Marcker KA.
RT Interdependence and nodule specificity of cis-acting regulatory
RT elements in the soybean leghemoglobin lbc3 and N23 gene
RT promoters.
RL Mol Gen Genet. 220: 353-360 (1990).
RD PubMed: 2338938
XX
SQ
CTCTT
//
ID NONAMERATH4
XX
AC S000147
XX
DT 10-May-1998 (last modified) kehi
XX
DE Nonamer motif of Arabidopsis thaliana (A.t.) histone H4
DE promoter;
XX
KW nonamer; histone; H4; meristem;
XX
OS Arabidopsis thaliana;
XX
RA Chaubet N, Flenet M, Clement B, Brignon P, Gigot C
RT Identification of cis-elements regulating the expression of an
RT Arabidopsis histone H4 gene.
RL Plant J 10:425-435 (1996)
RD PubMed: 8811858;
XX
SQ
AGATCGACG
//
ID NONAMERMOTIFTAH3H4
XX
AC S000071
XX
DT 17-May-1998 (last modified) kehi
XX
DE "Nonamer motif" found in promoter of wheat (T.a.) histone genes
DE H3 and H4;
XX
KW HBP-1A; HBP-1B; wheat histone; CaMV 35S; NOS; meristem;
XX
OS wheat (Triticum aestivum); CaMV;
XX
RA Nakayama T, Sakamoto A, Yang P, Minami M, Fujimoto Y, Ito T,
RA Iwabuchi M
RT Highly conserved hexamer, octamer and nonamer motifs are positive
RT cis-regulatory elements of the wheat histone H3 gene.
RL FEBS Lett 300:167-170 (1992)
RD PubMed: 1563517; GenBank: S95162;
XX
SQ
CATCCAACG
//
ID NRRBNEXTA
XX
AC S000242
XX
DT 11-0ct-1999 (last modified) kehi
XX
DE "NRR (negative regulatory region)" in promoter region of Brassica
DE napus (B.n.) extA extensin gene; Removal of this region leads to
DE expression in all tissues within the stem internode, petiole and
DE root;
XX
KW ext; extensin; stem; internode; petiole; root;
XX
OS Brassica napus
XX
RA Elliott KA , Shirsat AH
RT Promoter regions of the extA extensin gene from Brassica napus
RT control activation in response to wounding and tensile stress
RL Plant Mol Biol 37:675-687 (1998)
RD PubMed: 9687071;
XX
SQ
TAGTGGAT
//
ID NTBBF1ARROLB
XX
AC S000273
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE NtBBF1(Dof protein from tobacco) binding site in Agrobacterium
DE rhizogenes (A.r.) rolB gene; Found in regulatory domain B (-341
DE to -306); Required for tissue-specific expression and auxin
DE induction;
XX
KW rolB; Dof; auxin; domain B; root; shoot; meristem; vascular;
XX
OS Agrobacterium rhizogenes
XX
RA Baumann K, De Paolis A, Costantino P, Gualberti G
RT The DNA binding site of the Dof protein NtBBF1 is essential for
RT tissue-specific and auxin-regulated expression of the rolB
RT oncogene in plants
RL Plant Cell 11:323-333 (1999)
RD PubMed: 10072394; GenBank: AJ009594;
XX
SQ
ACTTTA
//
ID O2F1BE2S1
XX
AC S000162
XX
DT 17-May-1998 (last modified) kehi
XX
DE opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut
DE tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2
DE and F3 sequences of be2S1 promoter; F1 is hybrid C/G box;
XX
KW O2; opaque-2; be2S1; F1; seed;
XX
OS Brazil nut tree (Bertholletia excelsa);
XX
RA Vincentz M, Leite A, Neshich G, Vriend G, Mattar C, Barros L,
RA Weinberg D, de Almeida ER, Paes de Carvalho M, Aragao F, Gander
RA ES
RT ACGT and vicilin core sequences in a promoter domain required for
RT seed-specific expression of a 2S storage protein gene are
RT recognized by the opaque-2 regulatory protein.
RL Plant Mol Biol 34:879-889 (1997)
RD PubMed: 9290640; GenBank: X78287;
XX
SQ
TCCACGTCGA
//
ID O2F2BE2S1
XX
AC S000163
XX
DT 17-May-1998 (last modified) kehi
XX
DE opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut
DE tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2
DE and F3 sequences of be2S1 promoter; F2 is a new O2-binding
DE sequence related to the O2 target sites of the Coix alpha-coxin,
DE the maize b-32 genes and the AP-1 pseudopalindrome;
XX
KW O2; opaque-2; be2S1; seed;
XX
OS Brazil nut tree (Bertholletia excelsa)
XX
RA Vincentz M, Leite A, Neshich G, Vriend G, Mattar C, Barros L,
RA Weinberg D, de Almeida ER, Paes de Carvalho M, Aragao F, Gander
RA ES
RT ACGT and vicilin core sequences in a promoter domain required for
RT seed-specific expression of a 2S storage protein gene are
RT recognized by the opaque-2 regulatory protein.
RL Plant Mol Biol 34:879-889 (1997)
RD PubMed: 9290640; GenBank: X78287;
XX
SQ
GCCACCTCAT
//
ID O2F3BE2S1
XX
AC S000164
XX
DT 17-May-1998 (last modified) kehi
XX
DE opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut
DE tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2
DE and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box;
XX
KW O2; opaque-2; be2S1; seed;
XX
OS Brazil nut tree (Bertholletia excelsa)
XX
RA Vincentz M, Leite A, Neshich G, Vriend G, Mattar C, Barros L,
RA Weinberg D, de Almeida ER, Paes de Carvalho M, Aragao F, Gander
RA ES
RT ACGT and vicilin core sequences in a promoter domain required for
RT seed-specific expression of a 2S storage protein gene are
RT recognized by the opaque-2 regulatory protein.
RL Plant Mol Biol 34:879-889 (1997)
RD PubMed: 9290640; GenBank: X78287;
XX
SQ
TCCACGTACT
//
ID OBF5ATGST6
XX
AC S000304
XX
DT 29-Sep-2003 (last modified) kehi
XX
DE "OBF5 (ocs element binding factor 5)" binding site found in the
DE Arabidopsis (A.t.) GST6 gene promoter; Similar to Ocs sequence;
DE Located between -426 and -401; See S000305; Overexpression of
DE OBP3 lead to severe growth defect with altered root development
DE and yellowish leaves; All OBP proteins contain transcriptional
DE activation domains in their C-terminal region; Dof protein play
DE important roles in plant growth and development; Binding site of
DE OBF4 and OBF5; See S000305, S000346;
XX
KW GST; Ocs; OBF; OBP; auxin; SA; cycloheximide, Dof; TGA; pathogen;
KW root; leaf; shoot;
XX
OS Arabidopsis (Arabidopsis thaliana)
XX
RA Chen W, Chao G, Singh KB
RT The promoter of a H202-inducible, Arabidopsis glutathione
RT S-transferase gene contains closely linked OBF- and OBP1-binding
RT sites
RL Plant J 10: 955-966 (1996)
RD PubMed: 9011080;
XX
RA Kang HG, Singh KB
RT Characterization of salicylic acid-responsive, Arabidopsis Dof
RT domain proteins: Overexpression of OBP3 leads to growth defects
RL Plant J 21: 329-339 (2000)
RD PubMed: 10758484;
XX
RA Zhang B, Foley RC, Singh KB
RT Isolation and characterization of two related Arabidopsis
RT ocs-element bZIP binding proteins
RL Plant J (1993) 4: 711-716
RD PubMed: 8252072; GenBank: X69899; X69900;
XX
RA Zhang B, Chen W, Foley RC, Buttner M, Singh KB
RT Interactions between distinct types of DNA binding proteins
RT enhance binding to ocs element promoter sequences
RL Plant Cell 7: 2241-2252 (1995)
RD PubMed: 8718629; GenBank: X89192;
XX
SQ
ATCTTATGTCATTGATGACGACCTCC
//
ID OBP1ATGST6
XX
AC S000305
XX
DT 29-Sep-2003 (last modified) kehi
XX
DE OBP1, 4, and 5 (OBF binding protein) binding site found in the
DE Arabidopsis (A.t.) GST6 gene promoter; Located between -398 and
DE -388; OBP1 is able to stimulate the binding of OBF proteins to
DE the GST6 promoter; See S000304; Overexpression of OBP3 lead to
DE severe growth defect with altered root development and yellowish
DE leaves; All OBP proteins contain transcriptional activation
DE domains in their C-term. region; Dof protein play important roles
DE in plant growth and development; See S000304;
XX
KW GST; Ocs; OBF; OBP; auxin; SA; cycloheximide, Dof; root; leaf;
KW shoot;
XX
OS Arabidopsis (Arabidopsis thaliana)
XX
RA Chen W, Chao G, Singh KB
RT The promoter of a H202-inducible, Arabidopsis glutathione
RT S-transferase gene contains closely linked OBF- and OBP1-binding
RT sites
RL Plant J 10: 955-966 (1996)
RD PubMed: 9011080;
XX
RA Kang HG, Singh KB
RT Characterization of salicylic acid-responsive, Arabidopsis Dof
RT domain proteins: Overexpression of OBP3 leads to growth defects
RL Plant J 21: 329-339 (2000)
RD PubMed: 10758484;
XX
RA Zhang B, Foley RC, Singh KB
RT Isolation and characterization of two related Arabidopsis
RT ocs-element bZIP binding proteins
RL Plant J (1993) 4: 711-716
RD PubMed: 8252072; GenBank: X69899; X69900;
XX
RA Zhang B, Chen W, Foley RC, Buttner M, Singh KB
RT Interactions between distinct types of DNA binding proteins
RT enhance binding to ocs element promoter sequences
RL Plant Cell 7: 2241-2252 (1995)
RD PubMed: 8718629; GenBank: X89192;
XX
SQ
TACACTTTTGG
//
ID OCETYPEIIINTHISTONE
XX
AC S000269
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE "Type III element"; Oct-containing composite element Type III
DE found in tobacco (N.t.) histone gene promoter; Oct (octomer)
DE motif is paired with CCAAT-box to form Type III element; Required
DE for S-phase specific and meristematic tissue-specific
DE expression;
XX
KW histone; Oct; OCE; CCAAT-box; Type III; S-phase; meristem;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Taoka K, Kaya H, Nakayama T, Araki T, Meshi T, Iwabuchi M
RT Identification of three Kinds of mutually related composite
RT elements conferring S phase-specific transcriptional activation
RL Plant J 18:611-623 (1999)
RD PubMed: 10417712;
XX
SQ
GATCCGCGNNNNNNNNNNNNNNACCAATCS
//
ID OCETYPEIINTHISTONE
XX
AC S000268
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE "Type II element"; Oct-containing composite element Type II found
DE in tobacco (N.t.) histone gene promoter; Oct (octomer) motif is
DE paired with TCA motif to form Type II element; Required for
DE S-phase specific and meristematic tissue-specific expression;
XX
KW histone; Oct; OCE; TCA-motif; Type II; S-phase; meristem;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Taoka K, Kaya H, Nakayama T, Araki T, Meshi T, Iwabuchi M
RT Identification of three Kinds of mutually related composite
RT elements conferring S phase-specific transcriptional activation
RL Plant J 18:611-623 (1999)
RD PubMed: 10417712;
XX
SQ
TCACGCGGATC
//
ID OCETYPEINTHISTONE
XX
AC S000267
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE "Type I element"; Oct-containing composite element Type I found
DE in tobacco (N.t.) histone gene promoter; Oct (octomer) motif is
DE paired with Hex motif to form Type I element; Required for
DE S-phase specific and meristematic tissue-specific expression;
XX
KW histone; Oct; OCE; Hex-motif; Type I; meristem; S-phase;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Taoka K, Kaya H, Nakayama T, Araki T, Meshi T, Iwabuchi M
RT Identification of three Kinds of mutually related composite
RT elements conferring S phase-specific transcriptional activation
RL Plant J 18:611-623 (1999)
RD PubMed: 10417712;
XX
SQ
CCACGTCANCGATCCGCG
//
ID OCSELEMENTAT
XX
AC S000158
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "OCS element" in octopine synthase gene (OCS) of Ti-plasmid of
DE Agrobacterium (A.t.); Binding with nuclear protein isolated from
DE tobacco; See OCS motif (S000074); "ocs-like element"; Also found
DE in Arabidopsis glutathione S-transferase gene (GST6); OBF (ocs
DE element binding factor)-binding site; See S000346; Tandem OCSTF
DE binding-sites are essential for the activity of the Ocs-element;
DE The Ocs-element occures rarely in plant gene promoters; See
DE S000357;
XX
KW octopine synthase; ocs; GST6; glutathione S-transferase;
XX
OS Agrobacterium tumefaciens; tobacco; Arabidopsis thaliana;
XX
RA Bouchez D, Tokuhisa JG, Llewellyn DJ, Dennis ES, Ellis JG
RT The ocs-element is a component of the promoters of several T-DNA
RT and plant viral genes.
RL EMBO J 8:4197-4204 (1989)
RD PubMed: 2591372;
XX
RA Foley RC, Grossman C, Ellis JG, Llewellyn DJ, Dennis ES, Peacock
RA WJ, Singh KB
RT Isolation of a maize bZIP protein subfamily: candidates for the
RT ocs-element transcription factor.
RL Plant J 3: 669-679 (1993)
RD PubMed: 8374617;
XX
RA Chen W, Chao G, Singh KB
RT The promoter of a H2O2-inducible, Arabidopsis glutathione
RT S-transferase gene contains closely linked OBF- and OBP1-binding
RT sites
RL Plant J 10:955-966 (1996)
RD PubMed: 9011080;
XX
RA Ellis JG, Tokuhisa JG, Llewellyn DJ, Bouchez D, Singh K, Dennis
RA ES, Peacock WJ
RT Does the ocs-element occur as a functional component of the
RT promoters of plant genes?
RL Plant J (1993) 4: 433-443
RD PubMed: 8220489;
XX
SQ
TGACGYAAGSRMTKACGYMM
//
ID OCSENHANMOTIFAT
XX
AC S000074
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "OCS enhancer element" in octopine synthase gene (OCS) of
DE Ti-plasmid of Agrobacterium tumefaciens (A.t.); Binding with
DE nuclear protein isolated from tobacco and maize; See S000346;
DE Tandem OCSTF binding-sites are essential for the activity of the
DE Ocs-element; The Ocs-element occures rarely in plant gene
DE promoters; See S000357; "OCS palindrome" found in tobacco (N.t.)
DE OCS (Octopine synthase gene) promoter; Located at -193 to -178;
DE Binding site of ASF-1; Confers expression of the gene;
XX
KW octopine synthase; ocs; enhancer; ASF-1;
XX
OS Agrobacterium tumefaciens; tobacco (Nicotiana tabacum); maize
OS (Zea mays);
XX
RA Singh K, Tokuhisa JG, Dennis ES, Peacock WJ
RT Saturation mutagenesis of the octopine synthase enhancer:
RT correlation of mutant phenotypes with binding of a nuclear
RT protein factor.
RL Proc Natl Acad Sci USA 86:3733-3737 (1989)
RD PubMed: 2726750;
XX
RA Ellis JG, Tokuhisa JG, Llewellyn DJ, Bouchez D, Singh K, Dennis
RA ES, Peacock WJ
RT Does the ocs-element occur as a functional component of the
RT promoters of plant genes?
RL Plant J (1993) 4: 433-443
RD PubMed: 8220489;
XX
RA Fromm H, Katagiri F, Chua NH
RT An octopine synthase enhancer element directs tissue-specific
RT expression and binds ASF-1, a factor from tobacco nuclear
RT extracts
RL Plant Cell 1: 977-984 (1989)
RD PubMed: 2562557;
XX
RA Tokuhisa JG, Singh K, Dennis ES, Peacock WJ
RT A DNA-binding protein factor recognizes two binding domains
RT within the octopine synthase enhancer element
RL Plant Cell 2: 215-224 (1990)
RD PubMed: 2152113;
XX
SQ
ACGTAAGCGCTTACGT
//
ID OCSGMGH24
XX
AC S000346
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "OCS element" found in the soybean (G.m) GH2/4 gene promoter;
DE Required for auxin and salycylic acid responsiveness; Activated
DE by both active and inactive auxin and salicylic acid analogues;
DE See S000074, S000130, S000158, S000304; Tandem OCSTF
DE binding-sites are essential for the activity of the Ocs-element;
DE The Ocs-element occurs rarely in plant gene promoters; See
DE S000357;
XX
KW OCS; auxin; salicylic acid; GH2/4;
XX
OS Soybean (Glycine max)
XX
RA Ulmasov T, Hagen G, Guilfoyle T
RT The ocs element in the soybean GH2/4 promoter is activated by
RT both active and inactive auxin and salicylic acid analogues
RL Plant Mol Biol 26: 1055-1064 (1994)
RD PubMed: 7811965;
XX
RA Ellis JG, Tokuhisa JG, Llewellyn DJ, Bouchez D, Singh K, Dennis
RA ES, Peacock WJ
RT Does the ocs-element occur as a functional component of the
RT promoters of plant genes?
RL Plant J (1993) 4: 433-443
RD PubMed: 8220489;
XX
SQ
CGGTTTACGTAATCTCTTACATCA
//
ID OCSGMHSP26A
XX
AC S000357
XX
DT 16-Feb-2001 (last modified) seki
XX
DE Ocs element found in soybean (Glycine max) heat shock gene
DE (Gmhsp26-A) promoter; The element is a functional ocs-element;
DE The element did not affect the promoter's response to heat or
DE wounding;
XX
KW Ocs; Hsp;
XX
OS Soybean (Glycine max)
XX
RA Ellis JG, Tokuhisa JG, Llewellyn DJ, Bouchez D, Singh K, Dennis
RA ES, Peacock WJ
RT Does the ocs-element occur as a functional component of the
RT promoters of plant genes?
RL Plant J (1993) 4: 433-443
RD PubMed: 8220489;
XX
SQ
TGATGTAAGAGATTACGTAA
//
ID OCTAMERMOTIFTAH3H4
XX
AC S000076
XX
DT 11-May-2006 (last modified) kehi
XX
DE "Octamer motif" found in promoter of wheat (T.a.) histone genes
DE H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone
DE H4; "histone-specific octamer"; About half of the Oct motifs are
DE present together with another element, HexA, TCA or CCAAT-box,
DE forming OCES (Oct-containing composite elements);
XX
KW histone; Oct; S-phase; CaMV 35S; NOS; meristem;
XX
OS wheat (Triticum aestivum); maize (Zea mays); CaMV; Arabidopsis
OS thaliana; tobacco (Nicotiana tabacum);
XX
RA Chaubet N, Philipps G, Chaboute M-E, Ehling M, Gigot C
RT Nucleotide sequences of two corn histone H3 genes. Genomic
RT organization of the corn histone H3 and H4 genes.
RL Plant Mol Biol 6:253-263 (1986)
XX
RA Nakayama T, Sakamoto A, Yang P, Minami M, Fujimoto Y, Ito T,
RA Iwabuchi M
RT Highly conserved hexamer, octamer and nonamer motifs are positive
RT cis-regulatory elements of the wheat histone H3 gene.
RL FEBS Lett 300:167-170 (1992)
RD PubMed: 1563517; GenBank: S95162;
XX
RA Chaubet N, Flenet M, Clement B, Brignon P, Gigot C
RT Identification of cis-elements regulating the expression of an
RT Arabidopsis histone H4 gene.
RL Plant J 10:425-435 (1996)
RD PubMed: 8811858;
XX
RA Taoka K, Kaya H, Nakayama T, Araki T, Meshi T, Iwabuchi M
RT Identification of three Kinds of mutually related composite
RT elements conferring S phase-specific transcriptional activation
RL Plant J 18:611-623 (1999)
RD PubMed: 10417712;
XX
SQ
CGCGGATC
//
ID OCTAMOTIF2
XX
AC S000116
XX
DT 17-May-1998 (last modified) kehi
XX
DE Octamer motif found in histone-gene-specific consensus sequences;
DE 200 base upstream from the initiation codon ATG; Exist in all of
DE seven plant histone genes;
XX
KW octamer; histone; meristem;
XX
OS maize (Zea mays);
XX
RA Chaubet N, Philipps G, Chaboute M-E, Ehling M, Gigot C
RT Nucleotide sequences of two corn histone H3 genes. Genomic
RT organization of the corn histone H3 and H4 genes.
RL Plant Mol Biol 6:253-263 (1986)
XX
SQ
CGCGGCAT
//
ID OPAQUE2ZM22Z
XX
AC S000017
XX
DT 17-May-2001 (last modified) uchi
XX
DE Opaque-2 (O2) target sequence in maize (Z.m.) 22- and 27-kD zein
DE promoters; "ACGT motif"; Related to seed expression; "O2 target
DE sequence"; Gene: maize 22-kD zein; transacting factor: 02;
XX
KW O2; opaque; 22-kD zein; seed; ACGT; opaque-2;
XX
OS maize (Zea mays)
XX
RA Schmidt RJ, Ketudat M, Aukerman MJ, Hoschek G
RT Opaque-2 is a transcriptional activator that recognizes a
RT specific target site in 22-kD zein genes
RL Plant Cell 4:689-700 (1992)
RD PubMed: 1392590; GenBank: M86591;
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Ueda T, Waverczak W, Ward K, Sher N, Ketudat M, Schmidt RJ,
RA Messing J
RT Mutations of the 22- and 27-kD zein promoters affect
RT transactivation by the opaque-2 protein
RL Plant Cell 4:701-709 (1992)
RD PubMed: 1392591;
XX
RA Singh KB
RT Transcriptional Regulation in Plants: The Importance of
RT Combinatorial Comtrol
RL Plant Pysiol 118: 1111-1120 (1998)
RC review
RD PubMed: 9847085
XX
SQ
TCCACGTAGA
//
ID OPAQUE2ZMB32
XX
AC S000077
XX
DT 17-May-1998 (last modified) kehi
XX
DE "opaque-2 binding site" of maize (Z.m.) b-32 (type I
DE ribosome-inactivating protein gene; O2; O2S; O2S and GARE form a
DE gibberellin response complex (GARC)(Rogers and Rogers, 1992);
XX
KW opaque-2; o2; b-32; O2; O2S; coupling element; GARC; GARE; seed;
XX
OS maize (Zea mays)
XX
RA Muller M, Muth JR, Gallusci P, Knudsen S, Maddaloni M, Motto M,
RA Schmitz D, Sorensen MB, Salamini F, von Wettstein D, Thompson RD
RT Regulation of storage protein synthesis in cereal seeds:
RT developmental and nutritional aspects.
RL J Plant Physiol 145:606-613 (1995)
XX
RA Croissant-Sych Y, Okita TW
RT Identification of positive and negative regulatory cis-elements
RT of the rice glutelin Gt3 promoter.
RL Plant Science 116:27-35 (1996)
XX
RA Lohmer S, Maddaloni M, Motto M, Di Fonzo N, Hartings H, Salamini
RA F, Thompson RD
RT The maize regulatory locus Opaque-2 encodes a DNA-binding protein
RT which activates the transcription of the b-32 gene.
RL EMBO J 10:617-624 (1991)
RD PubMed: 2001677;
XX
RA Rogers JC, Rogers SW
RT Definition and functional implications of gibberellin and
RT abscisic acid cis-acting hormone response complexes.
RL Plant Cell 4:1443-1451 (1992)
RD PubMed: 1477557;
XX
RA Lanahan MB, Ho THD, Rogers SW, Rogers JC
RT A gibberellin response complex in cereal alpha-amylase gene
RT promoters.
RL Plant Cell 4:203-211 (1992)
RD PubMed: 1386000;
XX
SQ
GATGAYRTGG
//
ID OSE1ROOTNODULE
XX
AC S000467
XX
DT 24-April-2005 (last modified) kehi
XX
DE One of the consensus sequence motifs of organ-specific elements
DE (OSE) characteristic of the promoters activated in infected cells
DE of root nodules; See also S000468;
XX
KW leghemoglobin; Lb29; root; nodule; arbuscule;
XX
OS Vicia faba; Medicago truncatula; Glycine max; Sesbania rostrata;
XX
RA Vieweg MF, Fruhling M, Quandt HJ, Heim U, Baumlein H, Puhler A,
RA Kuster H, Andreas MP.
RT The promoter of the Vicia faba L. leghemoglobin gene VfLb29 is
RT specifically activated in the infected cells of root nodules and
RT in the arbuscule-containing cells of mycorrhizal roots from
RT different legume and nonlegume plants.
RL Mol Plant Microbe Interact. 17: 62-69 (2004).
RD PubMed: 14714869
XX
RA Fehlberg V, Vieweg MF, Dohmann EM, Hohnjec N, Puhler A, Perlick
RA AM, Kuster H.
RT The promoter of the leghaemoglobin gene VfLb29: functional
RT analysis and identification of modules necessary for its
RT activation in the infected cells of root nodules and in the
RT arbuscule-containing cells of mycorrhizal roots.
RL J Exp Bot. 56:799-806 (2005)
RD PubMed: 15668224
XX
SQ
AAAGAT
//
ID OSE2ROOTNODULE
XX
AC S000468
XX
DT 24-April-2005 (last modified) kehi
XX
DE One of the consensus sequence motifs of organ-specific elements
DE (OSE) characteristic of the promoters activated in infected cells
DE of root nodules; See also S000467;
XX
KW leghemoglobin; Lb29; root; nodule; arbuscule;
XX
OS Vicia faba; Medicago truncatula; Glycine max; Sesbania rostrata;
XX
RA Vieweg MF, Fruhling M, Quandt HJ, Heim U, Baumlein H, Puhler A,
RA Kuster H, Andreas MP.
RT The promoter of the Vicia faba L. leghemoglobin gene VfLb29 is
RT specifically activated in the infected cells of root nodules and
RT in the arbuscule-containing cells of mycorrhizal roots from
RT different legume and nonlegume plants.
RL Mol Plant Microbe Interact. 17: 62-69 (2004).
RD PubMed: 14714869
XX
RA Fehlberg V, Vieweg MF, Dohmann EM, Hohnjec N, Puhler A, Perlick
RA AM, Kuster H.
RT The promoter of the leghaemoglobin gene VfLb29: functional
RT analysis and identification of modules necessary for its
RT activation in the infected cells of root nodules and in the
RT arbuscule-containing cells of mycorrhizal roots.
RL J Exp Bot. 56:799-806 (2005)
RD PubMed: 15668224
XX
SQ
CTCTT
//
ID P1BS
XX
AC S000459
XX
DT 27-March-2004 (last modified) kehi
XX
DE PHR1-binding sequence found in the upstream regions of phosphate
DE starvation responsive genes from several plant species; phr1
DE (phosphate starvation response 1) gene codes for PHR1 protein
DE related to PSR1 gene in C. reinhardtii;
XX
KW phosphate; starvation; MYB;
XX
OS Arabidopsis thaliana; Lycopersicon esculentum (tomato); Medicago
OS truncatula; Hordeum vulgare (barley);
XX
RA Rubio V, Linhares F, Solano R, Martin AC, Iglesias J, Leyva A,
RA Paz-Ares J.
RT A conserved MYB transcription factor involved in phosphate
RT starvation signaling both in vascular plants and in unicellular
RT algae.
RL Genes Dev. 15: 2122-2133.(2001)
RD PubMed: 11511543
XX
RA Schunmann PH, Richardson AE, Smith FW, Delhaize E.
RT Characterization of promoter expression patterns derived from the
RT Pht1 phosphate transporter genes of barley (Hordeum vulgare L.).
RL J Exp Bot. 55: 855-865. (2004)
RD PubMed: 15020637
XX
RA Schunmann PH, Richardson AE, Vickers CE, Delhaize E.
RT Promoter analysis of the barley Pht1;1 phosphate transporter gene
RT identifies regions controlling root expression and responsiveness
RT to phosphate deprivation.
RL Plant Physiol. 136: 4205-4214. (2004)
RD PubMed: 15542491
XX
SQ
GNATATNC
//
ID PALBOXAPC
XX
AC S000137
XX
DT 06-January-2006 (last modified) kehi
XX
DE Box A; Consensus; One of three putative cis-acting elements
DE (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC
DE 4.3.1.5) genes in parsley (P.c.); "None of these elements (boxes
DE P, A, and L) alone, or the promoter region containing all of them
DE together, conferred elicitor or light responsiveness. These
DE elements appear to be necessary but not sufficient for elicitor-
DE or light-mediated PAL gene activation." (Logemann et al., 1995);
DE See also S000136 (Box P), S000138 (Box L);
XX
KW Box A; PAL;
XX
OS parsley (Petroselinum crispum)
XX
RA Logemann E, Parniske M, Hahlbrock K
RT Modes of expression and common structural features of the
RT complete phenylalanine ammonia-lyase gene family in parsley.
RL Proc Natl Acad Sci USA 92:5905-5909 (1995)
RD PubMed: 7597051; GenBank: L37355, L37356, L37357;
XX
SQ
CCGTCC
//
ID PALBOXLPC
XX
AC S000138
XX
DT 06-January-2006 (last modified) kehi
XX
DE Box L; Consensus; One of three putative cis-acting elements
DE (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC
DE 4.3.1.5) genes in parsley (P.c.); "None of these elements (boxes
DE P, A, and L) alone, or the promoter region containing all of them
DE together, conferred elicitor or light responsiveness. These
DE elements appear to be necessary but not sufficient for elicitor-
DE or light-mediated PAL gene activation." (Logemann et al., 1995);
DE See also S000136 (Box P), S000137 (Box A);
XX
KW Box L; PAL;
XX
OS parsley (Petroselinum crispum)
XX
RA Logemann E, Parniske M, Hahlbrock K
RT Modes of expression and common structural features of the
RT complete phenylalanine ammonia-lyase gene family in parsley.
RL Proc Natl Acad Sci USA 92:5905-5909 (1995)
RD PubMed: 7597051; GenBank: L37355, L37356, L37357;
XX
SQ
YCYYACCWACC
//
ID PALBOXPPC
XX
AC S000136
XX
DT 06-January-2006 (last modified) kehi
XX
DE Box P; Consensus; One of three putative cis-acting elements
DE (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC
DE 4.3.1.5) genes in parsley (P.c.); "None of these elements (boxes
DE P, A, and L) alone, or the promoter region containing all of them
DE together, conferred elicitor or light responsiveness. These
DE elements appear to be necessary but not sufficient for elicitor-
DE or light-mediated PAL gene activation." (Logemann et al., 1995);
DE See also S000137 (Box A), S000138 (Box L);
XX
KW Box P; PAL;
XX
OS parsley (Petroselinum crispum)
XX
RA Logemann E, Parniske M, Hahlbrock K
RT Modes of expression and common structural features of the
RT complete phenylalanine ammonia-lyase gene family in parsley.
RL Proc Natl Acad Sci USA 92:5905-5909 (1995)
RD PubMed: 7597051; GenBank: L37355, L37356, L37357;
XX
SQ
YTYYMMCMAMCMMC
//
ID PALINDROMICCBOXGM
XX
AC S000255
XX
DT 23-June-2006 (last modified) kehi
XX
DE Palindromic C-box in soybean (G.m.); bZIP factors, STGA1 and STFs
DE (STF1 and STF2) found in soybean apical hypocotyl, bind to this
DE sequence;
XX
KW C-box; bZIP; STGA1; STF; hypocotyl; TGA; SA;
XX
OS Glycine max(soybean); Arabidopsis thaliana
XX
RA Cheong YH, Yoo CM, Park JM, Ryu GR, Goekjian VH , Nagao RT, Key
RA JL, Cho MJ, Hong JC
RT STF1 is a novel TGACG-binding factor with a zinc-finger motif and
RT a bZIP domain which heterodimerizes with GBF proteins
RL Plant J 15:199-209 (1998)
RD PubMed: 9721678;
XX
RA Thibaud-Nissen F, Wu H, Richmond T, Redman JC, Johnson C, Green
RA R, Arias J, Town CD
RT Development of Arabidopsis whole-genome microarrays and their
RT application to the discovery of binding sites for the TGA2
RT transcription factor in salicylic acid-treated plants.
RL Plant J 47:152-162 (2006)
RC in silico based on whole-genome microarray analysis after ChIP
XX
SQ
TGACGTCA
//
ID PASNTPARA
XX
AC S000336
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "pas"; as-1-related element found in the tobacco (N.t.) parA gene
DE promoter; Involved in Cadmium responsiveness; Not related to
DE copper responsiveness; Located between -68 and -49;
XX
KW parA; pas; cadmium; as-1;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Kusaba M, Takahashi Y, Nagata T
RT A multiple-stimuli-responsive as-1-related element of parA gene
RT confers responsiveness to cadmium but not to copper
RL Plant Physiol 111: 1161-1167 (1996)
RD PubMed: 8756498;
XX
SQ
TTACGCAAGCAATGACATCT
//
ID PE1ASPHYA3
XX
AC S000196
XX
DT 17-May-1998 (last modified) kehi
XX
DE PE1; Positively acting element found at -381 to -348 of oat
DE (A.s.) phyA3 promoter; A general positive element (Terzaghi &
DE Cashmore, 1995);
XX
KW phytochrome; phy; phyA; phyA3; leaf; shoot;
XX
OS oat (Avena sativa);
XX
RA Bruce WB, Quail PH
RT cis-Acting elements involved in photoregulation of an oat
RT phytochrome promoter in rice
RL Plant Cell 2:1081-1089 (1990)
RD PubMed: 2152109;
XX
RA Bruce WB, Deng X-W, Quial PH
RT A negatively acting DNA sequence element mediates
RT phytochrome-directed repression of phyA gene transcription.
RL EMBO J 10:3015-3024 (1991)
RD PubMed: 1915276;
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
RC Review
XX
SQ
GAAATAGCAAATGTTAAAAATA
//
ID PE2FNTRNR1A
XX
AC S000455
XX
DT 29-November-2004 (last modified) kehi
XX
DE "pE2F (proximal E2F elemen)" at -143bp of tobacco (N.t.) RNR1a
DE promoter; E2F factors involved in gene induction at the G1/S
DE transition of the cell cycle; Important for regulating specific
DE RNR1a (ribonucleotide reductase large subunit) gene expression in
DE response to UV-C irradiation; See S000367;
XX
KW E2F; RNR1a; UV-C; cell cycle; G1; S;
XX
OS Nicotiana tabacum (tobacco)
XX
RA Lincker F, Philipps G, Chaboute ME.
RT UV-C response of the ribonucleotide reductase large subunit
RT involves both E2F-mediated gene transcriptional regulation and
RT protein subcellular relocalization in tobacco cells.
RL Nucleic Acids Res. 32: 1430-1438 (2004). .
RD PubMed: 14990748
XX
SQ
ATTCGCGC
//
ID PE3ASPHYA3
XX
AC S000197
XX
DT 17-May-1998 (last modified) kehi
XX
DE PE3; Positively acting element found at -111 to -81 (Bruce et
DE al., 1991) of oat (A.s.) phyA3 promoter;
XX
KW phytochrome; phy; phyA; phyA3; leaf; shoot;
XX
OS oat (Avena sativa);
XX
RA Bruce WB, Quail PH
RT cis-Acting elements involved in photoregulation of an oat
RT phytochrome promoter in rice
RL Plant Cell 2:1081-1089 (1990)
RD PubMed: 2152109;
XX
RA Bruce WB, Deng X-W, Quial PH
RT A negatively acting DNA sequence element mediates
RT phytochrome-directed repression of phyA gene transcription.
RL EMBO J 10:3015-3024 (1991)
RD PubMed: 1915276;
XX
SQ
CAGCTCCCATGGCTCTCCCATCCGCGCCGGT
//
ID PIATGAPB
XX
AC S000381
XX
DT 23-Aug-2001 (last modified) uchi
XX
DE "PI" found in the Arabidopsis thaliana(A.T.) GAPB gene promoter;
DE Located between -157 and -150; Mutations in the "PI" resulted in
DE reductions of light-activated gene transcription; GAPB encodes
DE the B subunit of chloroplast glyceraldehyde-3-phosphate
DE dehydrogenase(GADPH) of A.T.;
XX
KW GAPB; glyceraldehyde-3-phosphate dehydrogenase; light-activated
KW transcription;
XX
OS Arabidopsis thaliana
XX
RA Chan CS, Guo L, Shih MC
RT Promoter analysis of the nuclear gene encoding the chloroplast
RT glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis
RT thaliana
RL Plant Mol Biol 46: 131-141 (2001)
RD PubMed: 11442054;
XX
SQ
GTGATCAC
//
ID PIIATGAPB
XX
AC S000382
XX
DT 23-Sep-2001 (last modified) kehi
XX
DE "PII" found in the Arabidopsis thaliana(A.T.) GAPB gene promoter;
DE Located between -69 and -50; Mutations in the "PII" resulted in
DE reductions of light-activated gene transcription; GAPB encodes
DE the B subunit of chloroplast glyceraldehyde-3-phosphate
DE dehydrogenase(GADPH) of A.T.;
XX
KW GAPB; glyceraldehyde-3-phosphate dehydrogenase; light-activated
KW transcription;
XX
OS Arabidopsis thaliana
XX
RA Chan CS, Guo L, Shih MC
RT Promoter analysis of the nuclear gene encoding the chloroplast
RT glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis
RT thaliana
RL Plant Mol Biol 46: 131-141 (2001)
RD PubMed: 11442054;
XX
SQ
TTGGTTTTGATCAAAACCAA
//
ID POLASIG1
XX
AC S000080
XX
DT 18-November-2005 (last modified) kehi
XX
DE "PolyA signal"; poly A signal found in legA gene of pea, rice
DE alpha-amylase; -10 to -30 in the case of animal genes. Near
DE upstream elements (NUE) in Arabidopsis (Loke et al. 2005);
XX
KW poly A signal; NUE; FUE;
XX
OS pea (Pisum sativum); rice (Oryza sativa); Arabidopsis thaliana;
XX
RA Heidecker G, Messing J
RT Structural analysis of plant genes.
RL Ann Rev Plant Physiol 37:439-466 (1986)
RC Review
XX
RA Joshi CP
RT Putative polyadenylation signals in nuclear genes of higher
RT plants: a compilation and analysis.
RL Nucleic Acids Res 15:9627-9640 (1987)
RD PubMed: 3697078;
XX
RA O'Neill SD, Kumagai MH, Majumdar A, Huang N, Sutliff TD,
RA Rodriguez RL
RT The alpha-amylase genes in Oryza sativa: Characterization of cDNA
RT clones and mRNA expression during seed germination.
RL Mol Gen Genet 221:235-244 (1990)
RD PubMed: 2370848; GenBank: M24286, M24287;
XX
RA Loke JC, Stahlberg EA, Strenski DG, Haas BJ, Wood PC, Li QQ.
RT Compilation of mRNA polyadenylation signals in Arabidopsis
RT revealed a new signal element and potential secondary
RT structures.
RL Plant Physiol. 138: 1457-1468. (2005)
RC in silico
RD PubMed: 15965016
XX
SQ
AATAAA
//
ID POLASIG2
XX
AC S000081
XX
DT 17-May-1998 (last modified) kehi
XX
DE "PolyA signal"; poly A signal found in rice alpha-amylase; -10 to
DE -30 in the case of animal genes. AATAAA; AATAAT; AATTAAA;
DE AATAAG;
XX
KW poly A signal;
XX
OS rice (Oryza sativa); animal;
XX
RA O'Neill SD, Kumagai MH, Majumdar A, Huand N, Sutliff TD,
RA Rodriguez RL
RT The alpha-amylase genes in Oryza sativa: Characterization of cDNA
RT clones and mRNA expression during seed germination.
RL Mol Gen Genet 221:235-244 (1990)
RD PubMed: 2370848; GenBank: M24286, M24287;
XX
SQ
AATTAAA
//
ID POLASIG3
XX
AC S000088
XX
DT 11-May-2006 (last modified) kehi
XX
DE "Plant polyA signal"; Consensus sequence for plant
DE polyadenylation signal;
XX
KW poly A; polyadenylation;
XX
OS maize (Zea mays)
XX
RA Heidecker G, Messing J
RT Structural analysis of plant genes.
RL Ann Rev Plant Physiol 37:439-466 (1986)
RC Review
XX
RA Joshi CP
RT Putative polyadenylation signals in nuclear genes of higher
RT plants: a compilation and analysis.
RL Nucleic Acids Res 15:9627-9640 (1987)
RD PubMed: 3697078;
XX
SQ
AATAAT
//
ID POLLEN1LELAT52
XX
AC S000245
XX
DT 26-October-2005 (last modified) kehi
XX
DE One of two co-dependent regulatory elements responsible for
DE pollen specific activation of tomato (L.e.) lat52 gene; Found at
DE -72 to -68 region; See S000246 (POLLEN2LELAT52); AGAAA and
DE TCCACCATA (S000246) are required for pollen specific expression;
DE Also found in the promoter of tomato endo-beta-mannanase gene
DE (LeMAN5) gene (Filichkin et al. 2004);
XX
KW pollen; lat52; endo-beta-mannnanase; MAN;
XX
OS Lycopersicon esculentum (tomato)
XX
RA Bate N, Twell D
RT Functional architecture of a late pollen promoter:
RT pollen-specific transcription is developmentally regulated by
RT multiple stage-specific and co-dependent activator elements
RL Plant Mol Biol 37:859-869 (1998)
RD PubMed: 9678581;
XX
RA Filichkin SA, Leonard JM, Monteros A, Liu PP, Nonogaki H.
RT A novel endo-beta-mannanase gene in tomato LeMAN5 is associated
RT with anther and pollen development.
RL Plant Physiol. 134 1080-1087 (2004)
RD PubMed: 14976239
XX
SQ
AGAAA
//
ID POLLEN2LELAT52
XX
AC S000246
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE One of two co-dependent regulatory elements responsible for
DE pollen specific activation of tomato (L.e.) lat52 gene; Found at
DE -60 to -52 region; See S000245 (POLLEN1LELAT52); AGAAA (S000245)
DE and TCCACCATA are required for pollen specific expression;
XX
KW pollen; lat52;
XX
OS tomato (Lycopersicon esculentum)
XX
RA Bate N, Twell D
RT Functional architecture of a late pollen promoter:
RT pollen-specific transcription is developmentally regulated by
RT multiple stage-specific and co-dependent activator elements
RL Plant Mol Biol 37:859-869 (1998)
RD PubMed: 9678581;
XX
SQ
TCCACCATA
//
ID PR2GCNT
XX
AC S000089
XX
DT 10-May-1998 (last modified) kehi
XX
DE "GC element" conserved in the 5' upstream regions of group 2 PR
DE protein genes (beta-1,3-glucanase (GLN2), chitinase (CHN17,
DE CHN50)) of tobacco (N.t.);
XX
KW tobacco; group 2; pr-protein; GC element; chitinase;
KW beta-1,3-glucanase;
XX
OS tobacco (Nicotiana tabacum);
XX
RA Ohme-Takagi M, Shinshi H
RT Structure and expression of a tobacco beta-1,3-glucanase gene.
RL Plant Mol Biol 15:941-946 (1990)
RD PubMed: 2103484; GenBank: X53600;
XX
SQ
TAARAGCCGCC
//
ID PREATPRODH
XX
AC S000450
XX
DT 04-August-2006 (last modified) kehi
XX
DE "PRE (Pro- or hypoosmolarity-responsive element) found in the
DE promoter region of proline dehydrogenase (ProDH) gene in
DE Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary
DE for the efficient expression of ProDH in response to L-Pro and
DE hypoosmolarity (Satoh et al., 2002); ATB2-binding site; Similar
DE to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP
DE transcription factors function as transcriptional activator for
DE hypoosmolarity-inducible ProDH (Satoh et al., 2004);
XX
KW proline; ProDH; hypoosomolarity; bZIP;
XX
OS Arabidopsis thaliana
XX
RA Satoh R, Nakashima K, Seki M, Shinozaki K, Yamaguchi-Shinozaki
RA K.
RT ACTCAT, a novel cis-acting element for proline- and
RT hypoosmolarity-responsive expression of the ProDH gene encoding
RT proline dehydrogenase in Arabidopsis.
RL Plant Physiol. 130:709-719 (2002).
RD PubMed: 12376638
XX
RA Satoh R, Fujita Y, Nakashima K, Shinozaki K, Yamaguchi-Shinozaki
RA K.
RT A novel subgroup of bZIP proteins functions as transcriptional
RT activators in hypoosmolarity-responsive expression of the ProDH
RT gene in Arabidopsis.
RL Plant Cell Physiol. 45: 309-317 (2004).
RD PubMed: 15047879
XX
RA Weltmeier F, Ehlert A, Mayer CS, Dietrich K, Wang X, Schutze K,
RA Alonso R, Harter K, Vicente-Carbajosa J, Droge-Laser W.
RT Combinatorial control of Arabidopsis proline dehydrogenase
RT transcription by specific heterodimerisation of bZIP
RT transcription factors.
RL EMBO J. 25:3133-3143. (2006)
RD PubMed: 16810321
XX
SQ
ACTCAT
//
ID PRECONSCRHSP70A
XX
AC S000506
XX
DT 04-January-2007 (last modified) kehi
XX
DE Consensus sequence of PRE (plastid response element) in the
DE promoters of HSP70A in Chlamydomonas; Involved in induction of
DE HSP70A gene by both MgProto and light; S=G/C; Y=C/T; R=A/G;
DE H=T/C/A; D=A/T/G;
XX
KW HSP; chlorophyl; MgProto;
XX
OS Chlamydomonas reinhardtii
XX
RA von Gromoff ED, Schroda M, Oster U, Beck CF.
RT Identification of a plastid response element that acts as an
RT enhancer within the Chlamydomonas HSP70A promoter.
RL Nucleic Acids Res. 34:4767-4779 (2006)
RC consensus;
RD PubMed: 16971458
XX
SQ
SCGAYNRNNNNNNNNNNNNNNNHD
//
ID PREMOTIFNPCABE
XX
AC S000230
XX
DT 17-May-1998 (last modified) kehi
XX
DE Motif sequence repeated many times in two positive regulatory
DE elements, PRE1 (-1554 to -1182) and PRE2 (-747 to -516) found far
DE upstream in the tobacco (N.p.) CAB gene (cab-E) promoter; Confer
DE maximum levels of photoregulated expression;
XX
KW PRE; cab; CAB; photoregulated genes; light-regulated genes;
KW light; leaf; shoot;
XX
OS tobacco (Nicotiana plumbaginifolia)
XX
RA Castresana C, Garcia-Luque I, Alonso E, Malik VS, Cashmore AR
RT Both positive and negative regulatory elements mediate expression
RT of a photoregulated CAB gene from Nicotiana plumbaginifolia.
RL EMBO J 7:1929-1936 (1988)
RD PubMed: 2901343; GenBank: X12512;
XX
RA Terzaghi WB, Cashmore AR
RT Light-regulated transcription
RL Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995)
RC Review
XX
SQ
ACCGGCCCACTT
//
ID PROLAMINBOX
XX
AC S000091
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE "Prolamin Box"; -330 consensus sequence found in all zein genes;
DE prolamin type consensus sequence found in the 5'upstream regions
DE of seed storage proteins of maize (22 kDa zein); similar sequence
DE found in 19 kDa zein, B-hordein (barley), gamma-gliadin (wheat),
DE high M.W. glutenin (wheat); ESBF-1 enhanced transcriptional
DE activation mediated by SPA (the endosperm-specific wheat bZIP
DE factor);
XX
KW prolamin-box; zein; hordein; gliadin; glutenin; SPA; bZIP; EB;
KW ESBF-1; endosperm; WPBF; DOF; seed;
XX
OS rice (Oryza sativa); maize (Zea mays); barley (Hordeum vulgare);
OS wheat (Triticum aestivum);
XX
RA Brown JWS, Wandelt C, Feix G
RT The upstream regions of zein genes: sequence analysis and
RT expression in the unicellular green alga Acetabularia.
RL Eur J Cell Biol 42:161-170 (1986)
XX
RA Maier U-G, Brown JWS, Toloczyki C, Feix G
RT Binding of a nuclear factor to a consensus sequence in the 5'
RT flanking region of zein genes from maize.
RL EMBO J 6:17-22 (1987)
XX
RA Schmidt RJ, Ketudat M, Aukerman MJ, Hoschek G
RT Opaque-2 is a transcriptional activator that recognizes a
RT specific target site in 22-kD zein genes.
RL Plant Cell 4:689-700 (1992)
RD PubMed: 1392590; GenBank: M86591;
XX
RA Conlan RS, Hammond-Kosack M, Bevan M
RT Transcription activation mediated by the bZIP factor SPA on the
RT endosperm box is modulated by ESBF-1 in vitro
RL Plant J 19:173-181 (1999)
RD PubMed: 10476064;
XX
SQ
CACATGTGTAAAGGT
//
ID PROLAMINBOXOSGLUB1
XX
AC S000354
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "Prolamine box" found in the rice (O.s.) GluB-1 gene promoter;
DE Involved in quantitative regulation of the GluB-1 gene; See
DE S000276, S000277, S000278 (for elements in GluB-1); See S000001,
DE S000091, S000265, S000341 (for Prolamin box);
XX
KW prolamine box; GluB-1; seed; endosperm;
XX
OS rice (Oryza sativa)
XX
RA Wu C, Washida H, Onodera Y, Harada K, Takaiwa F
RT Quantitative nature of the Prolamin-box, ACGT and AACA motifs in
RT a rice glutelin gene promoter: minimal cis-element requirements
RT for endosperm-specific gene expression
RL Plant J 23: 415-421 (2000)
RD PubMed: 10929134;
XX
SQ
TGCAAAG
//
ID PROXBBNNAPA
XX
AC S000263
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "prox B (proximal portion of B-box) found in napA gene of
DE Brassica napus (B.n.); CA-rich sequence; Found between -130 and
DE -124; Required for seed specific expression and ABA
DE responsiveness; See S000262, S000264; dist B ABRE mediated
DE transactivation by ABI3 adn ABI3-dependent response to ABA; a
DE tetramer of the composite RY/G complex mediated only
DE ABA-independent transactivation by ABI3; B2 domain of ABI3 is
DE necessary for ABA-independent and ABA-dependent activation
DE through the dist B ABRE;
XX
KW ABRE; ABA; prox B; B-box; seed; napA; napin;
XX
OS Brassica napus
XX
RA Ezcurra I, Ellerstrom M, Wycliffe P, Stalberg K, Rask L
RT Interaction between composite elements in the napA promoter: both
RT the B-box ABA-responsive complex and the RY/G complex are
RT necessary for seed-specific expression
RL Plant Mol Biol 40:699-709 (1999)
RD PubMed: 10480393
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RD PubMed: 9617810;
XX
RA Ezcurra I, Wycliffe P, Nehlin L, Ellerstrom M, Rask L
RT Transactivation of the Brassica napus napin promoter by ABI3
RT requires interaction of the conserved B2 and B3 domains of ABI3
RT with different cis-elements: B2 mediates activation through an
RT ABRE, whereas B3 interacts with an RY/G-box
RL Plant J 24:57-66 (2000)
RD PubMed: 11029704;
XX
SQ
CAAACACC
//
ID PSREGIONZMZM13
XX
AC S000253
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE Pollen specific (PS) region in maize (Z.m.) ZM13 gene promoter;
DE Found at -84 to -53;
XX
KW pollen; ZM13;
XX
OS maize (Zea mays)
XX
RA Hamilton DA, Schwarz YH, Mascarenhas JP
RT A monocot pollen-specific promoter contains separable
RT pollen-specific and quantitative elements
RL Plant Mol Biol 38:663-669 (1998)
RD PubMed: 9747811;
XX
SQ
TCGGCCACTATTTCTACGGGCAGCCAGACAAA
//
ID PYRIMIDINEBOXHVEPB1
XX
AC S000298
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "Pyrimidine box" found in the barley (H.v.) EPB-1 (cysteine
DE proteinase) gene promoter; Located between -120 to -113; Required
DE for GA induction; See S000297, S000259;
XX
KW EPB; cysteine proteinase; GA; ABA; GARE; pyrimidine box; seed;
KW aleurone;
XX
OS barley (Hordeum vulgare)
XX
RA Cercos M, Gomez-Cadenas A, Ho THD
RT Hormonal regulation of a cysteine proteinase gene, EPB-1, in
RT barley aleurone layers: cis- and trans-acting elements involved
RT in the co-ordinated gene expression regulated by gibberellins and
RT abscisic acid
RL Plant J 19: 107-118 (1999)
RD PubMed: 10476058
XX
SQ
TTTTTTCC
//
ID PYRIMIDINEBOXOSRAMY1A
XX
AC S000259
XX
DT 19-August-2004 (last modified) kehi
XX
DE Pyrimidine box found in rice (O.s.) alpha-amylase (RAmy1A) gene;
DE Gibberellin-respons cis-element of GARE and pyrimidine box are
DE partially involved in sugar repression; Found in the promoter of
DE barley alpha-amylase (Amy2/32b) gene which is induced in the
DE aleurone layers in response to GA; BPBF protein binds
DE specifically to this site; See S000265;
XX
KW alpha-amylase; sugar repression; GARE; pyrimidine box; feed-back
KW metabolic repression; embryo; seed; Dof; BPBF; pbf;
XX
OS rice (Oryza sativa); barley (Hordeum vulgare);
XX
RA Morita A, Umemura T, Kuroyanagi M, Futsuhara Y, Perata P,
RA Yamaguchi J
RT Functional dissection of a sugar-repressed alpha-amylase gene
RT (Ramy1A) promoter in rice embryos
RL FEBS Lett 423:81-85 (1998)
RD PubMed: 9506846;
XX
RA Mena M, Cejudo FJ, Isabel-Lamoneda I, Carbonero P
RT A Role for the DOF Transcription Factor BPBF in the Regulation of
RT Gibberellin-Responsive Genes in Barley Aleurone
RL Plant Physiol. 130: 111-119 (2002)
RD PubMed: 12226491;
XX
SQ
CCTTTT
//
ID QARBNEXTA
XX
AC S000244
XX
DT 11-0ct-1999 (last modified) kehi
XX
DE "QAR (quantitative activator region)" in promoter region of
DE Brassica napus (B.n.) extA extensin gene;
XX
KW ext; extensin;
XX
OS Brassica napus
XX
RA Elliott KA , Shirsat AH
RT Promoter regions of the extA extensin gene from Brassica napus
RT control activation in response to wounding and tensile stress
RL Plant Mol Biol 37:675-687 (1998)
RD PubMed: 9687071;
XX
SQ
AACGTGT
//
ID QELEMENTZMZM13
XX
AC S000254
XX
DT 11-Oct-1999 (last modified) kehi
XX
DE "Q(quantitative)-element" in maize (Z.m.) ZM13 gene promoter;
DE Found at -107 to -102; Involved in expression enhancing activity;
DE ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a
DE pollen-specific maize gene;
XX
KW enhancing; ZM13; LAT52; pollen;
XX
OS maize (Zea mays)
XX
RA Hamilton DA, Schwarz YH, Mascarenhas JP
RT A monocot pollen-specific promoter contains separable
RT pollen-specific and quantitative elements
RL Plant Mol Biol 38:663-669 (1998)
RD PubMed: 9747811;
XX
SQ
AGGTCA
//
ID RAV1AAT
XX
AC S000314
XX
DT 7-Sep-2000 (last modified) seki
XX
DE Binding consensus sequence of Arabidopsis (A.t.) transcription
DE factor, RAV1; RAV1 specifically binds to DNA with bipartite
DE sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1
DE protein contain AP2-like and B3-like domains; The AP2-like and
DE B3-like domains recognize the CAACA and CACCTG motifs,
DE respectively; The expression level of RAV1 were relatively high
DE in rosette leaves and roots; See S000315(CACCTG);
XX
KW RAV1; AP2; VP1; B3; root; leaf; shoot;
XX
OS Arabidopsis (Arabidopsis thaliana)
XX
RA Kagaya Y, Ohmiya K, Hattori T
RT RAV1, a novel DNA-binding protein, binds to bipartite recognition
RT sequence through two distinct DNA-binding domains uniquely found
RT in higher plants
RL Nucleic Acids Res 27: 470-478 (1999)
RD PubMed: 9862967;
XX
SQ
CAACA
//
ID RAV1BAT
XX
AC S000315
XX
DT 7-Sep-2000 (last modified) seki
XX
DE Binding consensus sequence of an Arabidopsis (A.t.) transcription
DE factor, RAV1; RAV1 specifically binds to DNA with bipartite
DE sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1
DE protein contain AP2-like and B3-like domains; The AP2-like and
DE B3-like domains recognize the CAACA and CACCTG motifs,
DE respectively; The expression level of RAV1 were relatively high
DE in rosette leaves and roots; See S000314(CAACA);
XX
KW RAV1; AP2; VP1; B3; root; leaf; shoot;
XX
OS Arabidopsis (Arabidopsis thaliana)
XX
RA Kagaya Y, Ohmiya K, Hattori T
RT RAV1, a novel DNA-binding protein, binds to bipartite recognition
RT sequence through two distinct DNA-binding domains uniquely found
RT in higher plants
RL Nucleic Acids Res 27: 470-478 (1999)
RD PubMed: 9862967;
XX
SQ
CACCTG
//
ID RBCSBOX2PS
XX
AC S000094
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE "rbcS box II"; 5' upstream region (-151) of pea (P.s.) rbcS gene;
DE Binding with trans factor GT-1; one of GT-1 boxes; For a
DE compilation of related GT elements and factors, see Villain et
DE al. (1996); GT-1 may act as a molecular switch modulated by
DE calcium-dependent phosphorylation and dephosphorylation in
DE response to light signals;
XX
KW rbcS; box II; GT-1 box; GT-1; light; LRE; leaf; shoot;
XX
OS pea (Pisum sativum)
XX
RA Fluhr R, Kuhlemeier C, Nagy F, Chua N-H
RT Organ-specific and light-induced expression of plant genes.
RL Science 232:1106-1112 (1986)
XX
RA Green PJ, Yong M-H, Cuozzo M, Kano-Murakami Y, Silverstein P,
RA Chua N-H
RT Binding site requirements for pea nuclear protein factor GT-1
RT correlate with sequences required for light-dependent
RT transcriptional activation of the rbcS-3A gene.
RL EMBO J 7:4035-4044 (1988)
RD PubMed: 3243271;
XX
RA Gilmartin PM, Sarokin L, Memelink J, Chua N-H
RT Molecular light switches for plant genes.
RL Plant Cell 2:369-378 (1990)
RD PubMed: 2152164;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Marechal E, Hiratsuka K, Delgado J, Nairn A, Qin J, Chait BT,
RA Chua NH
RT Modulation of GT-1 DNA-binding activity by calcium-dependent
RT phosphorylation
RL Plant Mol Biol 40:373-386 (1999)
RD PubMed: 10437822;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
XX
SQ
GTGTGGTTAATATG
//
ID RBCSBOX3PS
XX
AC S000095
XX
DT 17-May-1998 (last modified) kehi
XX
DE "rbcS box III"; 5' upstream region (-114) of pea (P.s.) rbcS
DE gene; binding with trans factor GT-1; one of GT-1 boxes; For a
DE compilation of related GT elements and factors, see Villain et
DE al. (1996);
XX
KW rbcS; box III; GT-1 box; GT-1; leaf; shoot;
XX
OS pea (Pisum sativum)
XX
RA Fluhr R, Kuhlemeier C, Nagy F, Chua N-H
RT Organ-specific and light-induced expression of plant genes.
RL Science 232:1106-1112 (1986)
XX
RA Green PJ, Yong M-H, Cuozzo M, Kano-Murakami Y, Silverstein P,
RA Chua N-H
RT Binding site requirements for pea nuclear protein factor GT-1
RT correlate with sequences required for light-dependent
RT transcriptional activation of the rbcS-3A gene.
RL EMBO J 7:4035-4044 (1988)
RD PubMed: 3243271;
XX
RA Gilmartin PM, Sarokin L, Memelink J, Chua N-H
RT Molecular light switches for plant genes.
RL Plant Cell 2:369-378 (1990)
RD PubMed: 2152164;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
SQ
ATCATTTTCACT
//
ID RBCSCONSENSUS
XX
AC S000127
XX
DT 17-May-1998 (last modified) kehi
XX
DE "rbcS general consensus sequence"; AATCCAA or AATCCAAC;
XX
KW rbcS; G box; I box; leaf; shoot;
XX
OS tomato (Lycopersicon esculentum); petunia (Petunia hybrida);
OS tobacco (Nicotiana tabacum); pea (Pisum sativum); soybean
OS (Glycine max);
XX
RA Manzara T, Gruissem W
RT Organization and expression of the genes encoding
RT ribulose-1,5-bisphosphate carboxylase in higher plants.
RL Photosynth Res 16:117-139 (1988)
XX
RA Donald RGK, Cashmore AR
RT Mutation of either G box or l box sequences profoundly affects
RT expression from the Arabidopsis rbcS-1A promoter.
RL EMBO J 9:1717-1726 (1990)
RD PubMed: 2347304;
XX
SQ
AATCCAA
//
ID RBCSGBOXPS
XX
AC S000096
XX
DT 17-May-1998 (last modified) kehi
XX
DE "rbcS G-box"; 5'upstream region (-211) of pea rbcS gene; binding
DE with trans factor GBF (CG-1); Light-responsiveness;
XX
KW rbcS; G-box; G box; GBF; CG-1; light; leaf; shoot;
XX
OS pea (Pisum sativum);
XX
RA Gilmartin PM, Sarokin L, Memelink J, Chua N-H
RT Molecular light switches for plant genes.
RL Plant Cell 2:369-378 (1990)
RD PubMed: 2152164;
XX
SQ
CACATGGCACT
//
ID RBENTGA3
XX
AC S000358
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "rbe (RSG binding element)" found in the tobacco (N.t.) GA3 gene
DE promoter; Binding site of RSG (Repression of shoot growth); RSG
DE is a bZIP transcriptional activator; RSG regulates the morphology
DE of plants by controlling the endogenous amounts of GAs;
XX
KW RSG; rbe; rbeGA3; bZIP; GA3; gibberellin; leaf; shoot;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Fukazawa J, Sakai T, Ishida S, Yamaguchi I, Kamiya Y, Takahashi
RA Y
RT Repression of shoot growth, a bZIP transcriptional activator,
RT regulates cell elongation by controlling the level of
RT gibberellins
RL Plant Cell 12: 901-915 (2000)
RD PubMed: 10852936;
XX
SQ
TCCAACTTGGA
//
ID RE1ASPHYA3
XX
AC S000195
XX
DT 17-May-1998 (last modified) kehi
XX
DE RE1 (putative repressor element) responsible for Pfr-directed
DE repression of oat (A.s.) phyA3 phytochrome gene; Also found in
DE pea AS1 (asparagine synthetase) gene (Ngai, Tsai, Coruzzi: Plant
DE J 12:1021-1234 (1997));
XX
KW light; repression; phy; phyA; leaf; shoot;
XX
OS oat (Avena sativa); pea (Pisum sativum);
XX
RA Bruce WB, Deng XW, Quail PH
RT A negatively acting DNA sequence element mediates
RT phytochrome-directed repression of phyA gene transcription
RL EMBO J 10:3015-3024 (1991)
RD PubMed: 1915276;
XX
RA Ngai N, Tsai FY, Coruzzi G
RT Light-induced transcriptional repression of the pea AS1 gene:
RT identification of cis-elements and transfactors
RL Plant J 12:1021-1034 (1997)
RD PubMed: 9418044;
XX
SQ
CATGGGCGCGG
//
ID REALPHALGLHCB21
XX
AC S000362
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "REalpha" found in Lemna gibba Lhcb21 gene promoter; Located at
DE -134 to -129; Binding site of proteins of whole-cell extracts;
DE The DNA binding activity is high in etiolated plants but much
DE lower in green plants; Required for phytochrome regulation; See
DE S000363;
XX
KW REalpha; Lhcb21; phytochrome; REbeta;
XX
OS Lemna gibba
XX
RA Degenhardt J, Tobin EM
RT A DNA binding activity for one of two closely defined phytochrome
RT regulatory elements in an Lhcb promoter is more abundant in
RT etiolated than in green plants
RL Plant Cell 8: 31-41 (1996)
RD PubMed: 8597658;
XX
SQ
AACCAA
//
ID REBETALGLHCB21
XX
AC S000363
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "REbeta" found in Lemna gibba Lhcb21 gene promoter; Located at
DE -114 to -109; A GATA sequence created at a position six
DE nucleotides upstream could replace the function of REbeta;
DE Required for phytochrome regulation; See S000362;
XX
KW REalpha; Lhcb21; phytochrome; REbeta;
XX
OS Lemna gibba
XX
RA Degenhardt J, Tobin EM
RT A DNA binding activity for one of two closely defined phytochrome
RT regulatory elements in an Lhcb promoter is more abundant in
RT etiolated than in green plants
RL Plant Cell 8: 31-41 (1996)
RD PubMed: 8597658;
XX
SQ
CGGATA
//
ID REGION1OSOSEM
XX
AC S000300
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "region 1" ABRE-like sequence found in rice (O.s.) Osem gene
DE promoter; Important for regulation by ABA; See S000102, S000299;
DE TRAB1, bZIP transcription factor, interacts with VP1 and mediates
DE abscisic acid-induced transcritption;
XX
KW ABRE; Em; Osem; ABA; VP1; seed;
XX
OS rice (Oryza sativa)
XX
RA Hattori T, Terada t, Hamasuna S
RT Regulation of the Osem gene by abscisic acid and the
RT transcriptional activator VP1: analysis of cis-acting promoter
RT elements required for regulation by abscisic acid and VP1
RL Plant J 7: 913-925 (1995)
RD PubMed: 7599651; GenBank: U22102
XX
RA Hobo T, Kowyama Y, Hattori T
RT A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic
RT acid-induced transcription
RL Proc Natl Acad Sci USA 96: 15348-15353 (1999)
RD PubMed: 10611387;
XX
SQ
CGGCGGCCTCGCCACG
//
ID RGATAOS
XX
AC S000191
XX
DT 17-May-1998 (last modified) kehi
XX
DE R-GATA (GATA motif binding factor) binding site; GATA motif is
DE found at -143 to -135 of RTBV promoter; GATA motif is required
DE for phloem-specific gene expression of Rice Tungro Bacilliform
DE Virus (RTBV); See also RNFG1OS (S000188), RNFG2OS (S000189), and
DE ABFOS (S000190);
XX
KW GATA; phloem; RTBV; R-GATA; stem; phloem;
XX
OS rice (Oryza sativa); RTBV; rice tungro bacilliform virus;
XX
RA Yin Y, Chen L, Beachy R
RT Promoter elements required for phloem-specific gene expression
RT from the RTBV promoter in rice
RL Plant J 12:1179-1188 (1997)
RD PubMed: 9418055;
XX
SQ
CAGAAGATA
//
ID RHERPATEXPA7
XX
AC S000512
XX
DT 04-January-2007 (last modified) kehi
XX
DE "Right part of RHEs (Root Hair-specific cis-Elements)" conserved
DE among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and
DE paralogous) genes from diverse angiosperm species with different
DE hair distribution patterns; K=G/T; W=T/A;
XX
KW root; hair;
XX
OS Arabidopsis thaliana
XX
RA Kim DW, Lee SH, Choi SB, Won SK, Heo YK, Cho M, Park YI, Cho HT.
RT Functional Conservation of a Root Hair Cell-Specific cis-Element
RT in Angiosperms with Different Root Hair Distribution Patterns.
RL Plant Cell. 18:2958-2970 (2006)
RD PubMed: 17098810
XX
SQ
KCACGW
//
ID RNFG1OS
XX
AC S000188
XX
DT 17-May-1998 (last modified) kehi
XX
DE RNFG1 binding site; Box I; RNFG1 is one of two Rice Nuclear
DE Factors required for phloem-specific gene expression of Rice
DE Tungro Bacilliform Virus (RTBV); Box I is found at -3 to +8 of
DE RTBV promoter; See also RNFG2OS (S000189);
XX
KW RNFG1; phloem; RTBV; stem; phloem;
XX
OS rice (Oryza sativa);
XX
RA Yin Y, Beachy RN
RT The regulatory regions of the rice tungro bacilliform virus
RT promoter and interacting nuclear factors in rice (Oryza sativa
RT L.)
RL Plant J 7:969-980 (1995)
RD PubMed: 7599653;
XX
SQ
GATCATCGATC
//
ID RNFG2OS
XX
AC S000189
XX
DT 12-Apri-2004 (last modified) kehi
XX
DE RNFG2 binding site; Box II; RNFG2 is one of two Rice Nuclear
DE Factors required for phloem-specific gene expression of Rice
DE Tungro Bacilliform Virus (RTBV); Box II is found at -53 to -39 of
DE RTBV promoter; See also RNFG1OS (S000188); "Box II" is the
DE binding site of bZIP protein RF2a and RF2b; RF2a and RF2b are
DE predominantly expressed in vascular tissue (Dai et al.);
XX
KW RNFG1; phloem; RTBV; Box II; stem; phloem; RF2a; RF2b; bZIP;
KW vascular;
XX
OS rice (Oryza sativa);
XX
RA Yin Y, Beachy RN
RT The regulatory regions of the rice tungro bacilliform virus
RT promoter and interacting nuclear factors in rice (Oryza sativa
RT L.)
RL Plant J 7:969-980 (1995)
RD PubMed: 7599653;
XX
RA Yin Y, Chen L, Beachy R
RT Promoter elements required for phloem-specific gene expression
RT from the RTBV promoter in rice
RL Plant J 12:1179-1188 (1997)
RD PubMed: 9418055;
XX
RA Dai S, Zhang Z, Chen S, Beachy RN.
RT RF2b, a rice bZIP transcription activator, interacts with RF2a
RT and is involved in symptom development of rice tungro disease.
RL Proc Natl Acad Sci U S A. 101:687-92.(2004)
RD PubMed: 14704272;
XX
SQ
CCAGTGTGCCCCTGG
//
ID ROOTMOTIFTAPOX1
XX
AC S000098
XX
DT 13-Feb-2001 (last modified) kehi
XX
DE Motif found both in promoters of rolD;
XX
KW root; rolD;
XX
OS Agrobacterium rhizogenes;
XX
RA Elmayan T, Tepfer M
RT Evaluation in tobacco of the organ specificity and strength of
RT the rol D promoter, domain A of the 35S promoter and the 35S^2
RT promoter
RL Transgenic Res 4:388-396 (1995)
RC Sequence similarity;
RD PubMed: 7581519;
XX
SQ
ATATT
//
ID RSEPVGRP1
XX
AC S000099
XX
DT 13-Feb-2001 (last modified) kehi
XX
DE "RSE (root-specific element)" of bean (P.v.) GRP1.8 gene;
DE consensus sequence;See also S000288 and S000289;
XX
KW root; GRP1.8;
XX
OS bean (Phaseolus vulgaris)
XX
RA Elmayan T, Tepfer M
RT Evaluation in tobacco of the organ specificity and strength of
RT the rol D promoter, domain A of the 35S promoter and the 35S^2
RT promoter.
RL Transgenic Res 4:388-396 (1995)
RD PubMed: 7581519;
XX
SQ
CAACTTTCATAT
//
ID RSEPVGRP18
XX
AC S000289
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "RSE (root-specific element)" found in bean (P.V.) grp1.8 gene
DE promoter; Located at -98 to -73; Required also for
DE vascular-specific expression in stem; See S000288, S000099;
XX
KW RSE; grp1.8; vascular; root; stem; shoot;
XX
OS bean (Phaseolus vulgaris)
XX
RA Keller B, Heierli D
RT Vascular expression of the grp1.8 promoter is controlled by three
RT specific regulatory elements and one unspecific activating
RT sequence
RL Plant Mol Biol 26: 747-756 (1994)
RD PubMed: 7948928
XX
SQ
CATCCAACTTTCATATCCATGTGCTT
//
ID RSRBNEXTA
XX
AC S000243
XX
DT 11-0ct-1999 (last modified) kehi
XX
DE "RSR (root specific region)" in promoter region of Brassica napus
DE (B.n.) extA extensin gene;
XX
KW root;
XX
OS Brassica napus
XX
RA Elliott KA , Shirsat AH
RT Promoter regions of the extA extensin gene from Brassica napus
RT control activation in response to wounding and tensile stress
RL Plant Mol Biol 37:675-687 (1998)
RD PubMed: 9687071;
XX
SQ
CAAACTCGTATATCCAT
//
ID RYREPEAT4
XX
AC S000010
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "RY repeat motif"; "Sph element"; seed expression; ABA; Gene:
DE maize C1, wheat Em, rice rab16A, maize Rab17; Transacting factor:
DE VP1 (maize C1); See S000105 RYREPEAT2 (CATGCAT); The RY sequence
DE motif does not play a major role in VP1 or ABA regulation of Em
DE gene in protoplast; VP1 gene is specifically required for
DE expression of the maturation program in seed development;
XX
KW RY motif; C1; Em; Rab17; seed; ABA; VP1; Sph element;
XX
OS maize (Zea mays); wheat (Triticum aestivum); rice (Oryza sativa)
XX
RA Hattori T, Vasil V, Rosenkrans L, Hannah LC, McCarty DR, Vasil
RA IK
RT The Viviparous-1 gene and abscisic acid activate the C1
RT regulatory gene for anthocyanin biosynthesis during seed
RT maturation in maize.
RL Genes Dev 6:609-618 (1992)
RD PubMed: 1532784;
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Busk PK, Pages M
RT Regulation of abscisic acid-induced transcription
RL Plant Mol Biol 37:425-435 (1998)
RC Review
RD PubMed: 9617810
XX
RA Vasil V, Marcotte Jr. WR, Rosenkrans L, Cocciolone SM, Vasil IK,
RA Quatrano RS, McCarty DR
RT Overlap of viviparous1 (VP1) and abscisic acid response elements
RT in the EM promoter: G-Box elements are sufficient but not
RT necessary for VP1 transactivation
RL Plant Cell 7: 1511-1518 (1995)
RD PubMed: 8589631
XX
RA McCarty DR, Hattori T, Carson CB, Vasil V, Lazar M, Vasil IK
RT The Viviparous-1 developmental gene of maize encodes a novel
RT transcriptional activator
RL Cell 66: 895-905 (1991)
RD PubMed: 1889090;
XX
SQ
TCCATGCATGCAC
//
ID RYREPEATBNNAPA
XX
AC S000264
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "RY repeat" found in RY/G box (the complex containing the two RY
DE repeats and the G-box) of napA gene in Brassica napus (B.n.);
DE Found between -78 and -50; Required for seed specific expression;
DE See S000262, S000263; dist B ABRE mediated transactivation by
DE ABI3 adn ABI3-dependent response to ABA; a tetramer of the
DE composite RY/G complex mediated only ABA-independent
DE transactivation by ABI3; B2 domain of ABI3 is necessary for
DE ABA-independent and ABA-dependent activation through the dist B
DE ABRE;
XX
KW RY repeat; RY/G box; seed; napA; napin;
XX
OS Brassica napus
XX
RA Ezcurra I, Ellerstrom M, Wycliffe P, Stalberg K, Rask L
RT Interaction between composite elements in the napA promoter: both
RT the B-box ABA-responsive complex and the RY/G complex are
RT necessary for seed-specific expression
RL Plant Mol Biol 40:699-709 (1999)
RD PubMed: 10480393;
XX
RA Ezcurra I, Wycliffe P, Nehlin L, Ellerstrom M, Rask L
RT Transactivation of the Brassica napus napin promoter by ABI3
RT requires interaction of the conserved B2 and B3 domains of ABI3
RT with different cis-elements: B2 mediates activation through an
RT ABRE, whereas B3 interacts with an RY/G-box
RL Plant J 24:57-66 (2000)
RD PubMed: 11029704;
XX
SQ
CATGCA
//
ID RYREPEATGMGY2
XX
AC S000105
XX
DT 11-May-2006 (last modified) kehi
XX
DE "RY repeat motif (CATGCAT)"; Present in the 5' region of the
DE soybean (G.m.) glycinin gene (Gy2);
XX
KW glycinin; CATGCAT; Gy2; seed;
XX
OS soybean (Glycine max);
XX
RA Lelievre J-M, Oliveira LO, Nielsen NC
RT 5'-CATGCAT-3' elements modulate the expression of glycinin
RT genes.
RL Plant Physiol 98:387-391 (1992)
RD PubMed: 16668640
XX
SQ
CATGCAT
//
ID RYREPEATLEGUMINBOX
XX
AC S000100
XX
DT 17-May-1998 (last modified) kehi
XX
DE "RY repeat (CATGCAY)" or legumin box found in seed-storage
DE protein genes in legume such as soybean (G.m.);
XX
KW RY repeat; legumin box; seed; storage protein;
XX
OS legume; soybean (Glycine max);
XX
RA Fujiwara T, Beachy RN
RT Tissue-specific and temporal regulation of a beta-conglycinin
RT gene: roles of the RY repeat and other cis-acting elements.
RL Plant Mol Biol 24:261-272 (1994)
RD PubMed: 8111031;
XX
SQ
CATGCAY
//
ID RYREPEATVFLEB4
XX
AC S000102
XX
DT 01-August-2006 (last modified) kehi
XX
DE "RY repeat motif"; quantitative seed expression; Gene: Vicia faba
DE LeB4; Soybean glycinin (Gy2); other dicot and monocot seed
DE protein genes; "Sph box" found in rice (O.s.) Osem gene promoter;
DE See S000010, S000299, S000300; Binding site of Arabidopsis
DE B3-domain-containing transcription factor FUS3; TRAB1, bZIP
DE transcription factor, interacts with VP1 and mediates abscisic
DE acid-induced transcritption; FUS3 protein physically interact
DE with two RY elements present in the AtGA3ox promoter (Curaba et
DE al., 2004);
XX
KW RY repeat motif; LeB4; Gy2; seed; Sph; ABA; VP1; Osem; Em; ABRE;
KW FUS3; embryo; B3; GA;
XX
OS bean (Phaseolus vulgaris); soybean (Glycine max); Vicia faba;
OS rice (Oryza sativa); Arabidopsis (Arabidopsis thaliana);
XX
RA Nag R, Maity MK, Dasgupta M.
RT Dual DNA binding property of ABA insensitive 3 like factors
RT targeted to promoters responsive to ABA and auxin.
RL Plant Mol Biol. 59: 821-838 (2005).
RD PubMed: 16270233
XX
RA Baumlein H, Nagy I, Villarroel R, Inze D, Wobus U
RT Cis-analysis of a seed protein gene promoter: the conservative RY
RT repeat CATGCATG within the legumin box is essential for
RT tissue-specific expression of a legumin gene.
RL Plant J 2:233-239 (1992)
RD PubMed: 1338774;
XX
RA Thomas TL
RT Gene expression during plant embryogenesis and germination: An
RT overview.
RL Plant Cell 5:1401-1410 (1993)
RC Review
RD PubMed: 8281041;
XX
RA Hattori T, Terada t, Hamasuna S
RT Regulation of the Osem gene by abscisic acid and the
RT transcriptional activator VP1: analysis of cis-acting promoter
RT elements required for regulation by abscisic acid and VP1
RL Plant J 7: 913-925 (1995)
RD PubMed: 7599651; GenBank: U22102
XX
RA Reidt W, Wohlfarth T, Ellerstrom M, Czihal A, Tewes A, Ezcurra I,
RA Rask L, Baumlein H
RT Gene regulation during late embryogenesis: the RY motif of
RT maturation-specific gene promoters is a direct target of the FUS3
RT gene product
RL Plant J 21: 401-408 (2000)
RD PubMed: 10758492;
XX
RA Hobo T, Kowyama Y, Hattori T
RT A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic
RT acid-induced transcription
RL Proc Natl Acad Sci USA 96: 15348-15353 (1999)
RD PubMed: 10611387;
XX
RA Curaba J, Moritz T, Blervaque R, Parcy F, Raz V, Herzog M, Vachon
RA G.
RT AtGA3ox2, a Key Gene Responsible for Bioactive Gibberellin
RT Biosynthesis, Is Regulated during Embryogenesis by LEAFY
RT COTYLEDON2 and FUSCA3 in Arabidopsis.
RL Plant Physiol. 136: 3660-3669. (2004)
RD PubMed: 15516508
XX
SQ
CATGCATG
//
ID S1FBOXSORPS1L21
XX
AC S000223
XX
DT 10-May-1998 (last modified) kehi
XX
DE "S1F box" conserved both in spinach (S.o.) RPS1 and RPL21 genes
DE encoding the plastid ribosomal protein S1 and L21, respectively;
DE Negative element; Might play a role in downregulating RPS1 and
DE RPL21 promoter activity (Lagrange et al., 1993); See S000211
DE (SITE1SORPS1), S000215 (S1FSORPL21);
XX
KW S1F; S1F box; S1F-box; S1; plastid protein; RPS1; RPL21; leaf;
KW negative;
XX
OS spinach (Spinacia oleracea)
XX
RA Zhou DX, LI YF, Rocipon M, Mache R
RT Sequence specific interaction between S1F, a spinach nuclear
RT factor, and a negative cis-element conserved in plastid-related
RT genes
RL J Biol Chem 267:23515-23519 (1992)
RD PubMed: 1429696;
XX
RA Lagrange T, Franzetti B, Axelos M, Mache R, Lerbs-Mache S
RT Structure and expression of the nuclear gene encoding for the
RT chloroplast ribosomal protein L21: Developmental regulation of a
RT house-keeping gene by alternative promoters
RL Mol Cell Biol 13:2614-2622 (1993)
RD PubMed: 8455634; GenBank: M64682;
XX
SQ
ATGGTA
//
ID S1FSORPL21
XX
AC S000215
XX
DT 19-August-2004 (last modified) kehi
XX
DE "S1F binding site" ("S1 site") in spinach (S.o.) RPL21 gene
DE encoding the plastid ribosomal protein L21; Negative element;
DE Might play a role in downregulating RPL21 promoter activity
DE (Lagrange et al., 1993); See S000211 (SITE1SORPS1), S000166
DE (S2FSORPL21);
XX
KW S1F; S1; plastid protein; RPL21; leaf; negative;
XX
OS spinach (Spinacia oleracea)
XX
RA Zhou DX, LI YF, Rocipon M, Mache R
RT Sequence specific interaction between S1F, a spinach nuclear
RT factor, and a negative cis-element conserved in plastid-related
RT genes
RL J Biol Chem 267:23515-23519 (1992)
RD PubMed: 1429696;
XX
RA Lagrange T, Franzetti B, Axelos M, Mache R, Lerbs-Mache S
RT Structure and expression of the nuclear gene encoding for the
RT chloroplast ribosomal protein L21: Developmental regulation of a
RT house-keeping gene by alternative promoters
RL Mol Cell Biol 13:2614-2622 (1993)
RD PubMed: 8455634; GenBank: M64682;
XX
RA Lagrange T, Gauvin S, Yeo HJ, Mache R
RT S2F, a leaf-specific trans-acting factor, binds to a novel
RT cis-acting element and differentially activates the RPL21 gene
RL Plant Cell 9:1469-1479 (1997)
RD PubMed: 9286115;
XX
SQ
ATGGTATT
//
ID S2FSORPL21
XX
AC S000166
XX
DT 17-May-1998 (last modified) kehi
XX
DE "S2F binding site" ("S2 site") in spinach RPL21 gene encoding the
DE plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in
DE promoter region of many nuclear genes encoding plastid proteins;
DE Leaf-specific, light-independent regulatory element; S2 site is
DE related to but different from the light-responsive GT-1 binding
DE site (Lagrange et al., 1997); For a compilation of related GT
DE elements and factors, see Villain et al. (1996);
XX
KW S2F; S2; plastid protein; RPL21; leaf-specific;
KW light-independent; light; GT element; leaf; shoot;
XX
OS spinach (Spinacia oleracea);
XX
RA Lagrange T, Gauvin S, Yeo HJ, Mache R
RT S2F, a leaf-specific trans-acting factor, binds to a novel
RT cis-acting element and differentially activates the RPL21 gene.
RL Plant Cell 9:1469-1479 (1997)
RD PubMed: 9286115;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
SQ
CCATACATT
//
ID SARECAMV
XX
AC S000156
XX
DT 16-Jan-1998 (last modified) kehi
XX
DE Salicylic acid responsive element found in CaMV 35S promoter;
DE Identical to as-1; Binding with ASF-1 (Activation Sequence
DE Factor-1); See AS1 (S000023);
XX
KW Salicylic acid; SARE; as-1;
XX
OS CaMV; Cauliflower mosaic virus;
XX
RA Qin X-F, Holuigue L, Horvath DM, Chua N-H
RT Immediate early transcription activation by salicylic acid via
RT the cauliflower mosaic virus as-1 element.
RL Plant Cell 6:863-874 (1994)
RD PubMed: 8061520;
XX
RA Stange C, Ramirez I, Gomez I, Jordana X, Holuigue L
RT Phosphorylation of nuclear proteins directs binding to salicylic
RT acid-responsive elements.
RL Plant J 11:1315-1324 (1997)
RD PubMed: 9225470;
XX
SQ
CTGACGTAAGGGATGACGCAC
//
ID SB1NPABC1
XX
AC S000435
XX
DT 27-Jan-2004 (last modified) kehi
XX
DE Sclareol box1 (SB1) found at -827 of a plasma membrane ATP
DE binding cassette (ABC) transporter gene (NpABC1) in N.
DE plumbaginifolia; Mutation in SB3 completely abolished
DE sclareolide-mediated expression; See S ;
XX
KW scalareol; diterpene; ABC; transporter;
XX
OS Nicotiana plumbaginifolia (tobacco);
XX
RA Grec S, Vanham D, de Ribaucourt J, Purnelle B, Boutry P.
RT Identification of regulatory sequence elements within the
RT transcription promoter region of NpABC1, a gene encoding a plant
RT ABC transporter induced by diterpenes.
RL Plant J. 35: 237-250 (2003)
RD PubMed: 12848828;
XX
SQ
CACTAACACAAAGTAA
//
ID SB3NPABC1
XX
AC S000434
XX
DT 27-Jan-2004 (last modified) kehi
XX
DE Sclareol box3 (SB3) found at -216 of a plasma membrane ATP
DE binding cassette (ABC) transporter gene (NpABC1) in N.
DE plumbaginifolia; Mutation in SB3 completely abolished
DE sclareolide-mediated expression; See S ;
XX
KW sclareol; ABC; transporter; SB3;
XX
OS Nicotiana plumbaginifolia (tobacco);
XX
RA Grec S, Vanham D, de Ribaucourt J, Purnelle B, Boutry P.
RT Identification of regulatory sequence elements within the
RT transcription promoter region of NpABC1, a gene encoding a plant
RT ABC transporter induced by diterpenes.
RL Plant J. 35: 237-250 (2003)
RD PubMed: 12848828;
XX
SQ
TTATGAACAGTAATT
//
ID SBOXATRBCS
XX
AC S000500
XX
DT 04-August-2006 (last modified) kehi
XX
DE "S-box" conserved in several rbcS promoters in Arabidopsis; ABI4
DE binding site; "Important for the sugar and ABA responsiveness of
DE CMA5"(Acevedo-Hernandez et al., 2005);
XX
KW rbcS; sugar; ABA; ABI4;
XX
OS Arabidopsis thaliana
XX
RA Acevedo-Hernandez GJ, Leon P, Herrera-Estrella LR.
RT Sugar and ABA responsiveness of a minimal RBCS light-responsive
RT unit is mediated by direct binding of ABI4.
RL Plant J. 43:506-519 (2005).
RC in silico; Electrophoretic mobility shift assay;
RD PubMed: 16098105
XX
SQ
CACCTCCA
//
ID SE1PVGRP18
XX
AC S000288
XX
DT 10-Feb-2000 (last modified) seki
XX
DE "SE1 (Stem element 1)" found in the bean (P.v.) grp1.8 gene
DE promoter; Located between -121 and -94; Enhances the expression
DE strongly but unspecifically; See S000289, S000101 (SE2);
XX
KW SE1; grp1.8; vascular; stem; shoot;
XX
OS bean (Phaseolus vulgaris)
XX
RA Keller B, Heierli D
RT Vascular expression of the grp1.8 promoter is controlled by three
RT specific regulatory elements and one unspecific activating
RT sequence
RL Plant Mol Biol 26: 747-756 (1994)
RD PubMed: 7948928
XX
SQ
ATAATGGGCCACACTGTGGGGCAT
//
ID SE2PVGRP1
XX
AC S000101
XX
DT 17-May-1998 (last modified) kehi
XX
DE "SE2 (stem element 2)" of bean (P.v.) GRP1.8 gene; part of SE2
DE element;
XX
KW stem; SE2; GRP; GRP1;
XX
OS bean (Phaseolus vulgaris)
XX
RA Elmayan T, Tepfer M.
RT Evaluation in tobacco of the organ specificity and strength of
RT the rolD promoter, domain A of the 35S promoter and the 35S2
RT promoter.
RL Transgenic Res 4:388-396 (1995)
RD PubMed: 7581519;
XX
SQ
TTNNNGTAGCTAGTGTATTTGTAT
//
ID SEBFCONSSTPR10A
XX
AC S000391
XX
DT 20-Feb-2002 (last modified) uchi
XX
DE Binding site of the potato silencing element binding factor
DE (SEBF) gene found in promoter of pathogenesis-related gene
DE (PR-10a); Located between -45 and -39; Similar to the auxin
DE response element; W=A/T;
XX
KW PR-10a; SEBF; pathogenesis; silencing;
XX
OS Solanum tuberosum (potato)
XX
RA Boyle B, Brisson N
RT Repression of the defense gene PR-10a by the single-stranded DNA
RT binding protein SEBF
RL Plant Cell 13: 2525-2537 (2001)
RD PubMed: 11701886;
XX
SQ
YTGTCWC
//
ID SEF1MOTIF
XX
AC S000006
XX
DT 17-May-1998 (last modified) kehi
XX
DE "SEF1 (soybean embryo factor 1)" binding motif; sequence found in
DE 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S
DE globulin) gene; W=A/T;
XX
KW SOYBEAN; STORAGE PROTEIN; 7S; GLOBULIN; BETA-CONGLICININ; seed;
XX
OS soybean (Glycine max)
XX
RA Allen RD, Bernier F, Lessard PA, Beachy RN
RT Nuclear factors interact with a soybean beta-conglycinin
RT enhancer.
RL Plant Cell 1:623-631 (1989)
RD PubMed: 2535514;
XX
RA Lessard PA, Allen RD, Bernier F, Crispino JD, Fujiwara T, Beachy
RA RN
RT Multiple nuclear factors interact with upstream sequences of
RT differentially regulated beta-conglycinin genes.
RL Plant Mol Biol 16:397-413 (1991)
RD PubMed: 1893110;
XX
SQ
ATATTTAWW
//
ID SEF3MOTIFGM
XX
AC S000115
XX
DT 17-May-1998 (last modified) kehi
XX
DE "SEF3 binding site"; Soybean (G.m.) consensus sequence found in
DE the 5' upstream region of beta-conglycinin (7S globulin) gene;
DE AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3;
DE SEF4;
XX
KW SEF3; beta-conglycinin; 7S; globulin; seed;
XX
OS soybean (Glycine max);
XX
RA Allen RD, Bernier F, Lessard PA, Beachy RN
RT Nuclear factors interact with a soybean beta-conglycinin
RT enhancer.
RL Plant Cell 1:623-631 (1989)
RD PubMed: 2535514;
XX
RA Lessard PA, Allen RD, Bernier F, Crispino JD, Fujiwara T, Beachy
RA RN
RT Multiple nuclear factors interact with upstream sequences of
RT differentially regulated beta-conglycinin genes.
RL Plant Mol Biol 16:397-413 (1991)
RD PubMed: 1893110;
XX
SQ
AACCCA
//
ID SEF4MOTIFGM7S
XX
AC S000103
XX
DT 17-May-1998 (last modified) kehi
XX
DE "SEF4 binding site"; Soybean (G.m.) consensus sequence found in
DE 5'upstream region (-199) of beta-conglycinin (7S globulin) gene
DE (Gmg17.1); "Binding with SEF4 (soybean embryo factor 4)"; R=A/G;
XX
KW soybean; seed; storage protein; 7S; globulin; beta-conglycinin;
KW SEF;
XX
OS soybean (Glycine max);
XX
RA Allen RD, Bernier F, Lessard PA, Beachy RN
RT Nuclear factors interact with a soybean beta-conglycinin
RT enhancer.
RL Plant Cell 1:623-631 (1989)
RD PubMed: 2535514;
XX
RA Lessard PA, Allen RD, Bernier F, Crispino JD, Fujiwara T, Beachy
RA RN
RT Multiple nuclear factors interact with upstream sequences of
RT differentially regulated beta-conglycinin genes.
RL Plant Mol Biol 16:397-413 (1991)
RD PubMed: 1893110;
XX
SQ
RTTTTTR
//
ID SGBFGMGMAUX28
XX
AC S000287
XX
DT 10-Feb-2000 (last modified) seki
XX
DE bZIP proteins SGBF-1 and SGBF-2 binding site in soybean (G.m.)
DE GmAux28 gene promoter; see S000042;
XX
KW Aux28; G box; auxin; bZIP; SGBF-1; SGBF-2;
XX
OS soybean (Glycine max)
XX
RA Hong JC, Cheong YH, Nagao RT, Bahk JD, Key JL, Cho MJ
RT Isolation of two soybean G-box binding factors which interact
RT with a G-box sequences of an auxin-responsive gene
RL Plant J 8: 199-211 (1995)
RD PubMed: 7670504; GenBank: L01447, L01448, L01449
XX
SQ
TCCACGTGTC
//
ID SITE1SORPS1
XX
AC S000211
XX
DT 11-May-2006 (last modified) kehi
XX
DE Site 1 in the spinach (S.o.) rps1 promoter; S1F binding site;
DE Nuclear genes encoding plastid ribosomal proteins are more highly
DE expressed in leaves than in root; Involved in leaf-specific
DE induction; Seems to be light-independent; Involved in negative
DE regulation; Related to the light-responsive Box II of the pea
DE rbcs-3A promoter; Related to GT elements; For a compilation of
DE related GT elements and factors, see Villain et al. (1996); See
DE S000215 (S1FSORPL21); S1 box=ATGGTA;
XX
KW Site 1; rps1; ribosomal protein; S1F; leaf; leaf-specific;
KW repression; negative;
XX
OS spinach (Spinacia oleracea);
XX
RA Zhou DX, Li YF, Rocipon M, Mache R
RT Sequence-specific interaction between S1F, a spinach nuclear
RT factor, and a negative cis-element conserved in plastid-related
RT genes
RL J Biol Chem 267:23515-23519 (1992)
RD PubMed: 1429696;
XX
RA Villain P, Clabault G, Mache R, Zhou DX
RT S1F binding site is related to but different from the
RT light-responsive GT-1 binding site and differentially represses
RT the spinach rps1 promoter in transgenic tobacco
RL J Biol Chem 269:16626-16630 (1994)
RD PubMed: 8206981;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
TCATGGTAACAATT
//
ID SITE3SORPS1
XX
AC S000212
XX
DT 11-May-2006 (last modified) kehi
XX
DE Site 3 of spinach (S.o.) rps1 promoter; S1F binding site; For a
DE compilation of related GT elements and factors, see Villain et
DE al. (1996);
XX
KW Site 3; rps1; S1F;
XX
OS spinach (Spinacia oleracea)
XX
RA Villain P, Clabault G, Mache R, Zhou DX
RT S1F binding site is related to but different from the
RT light-responsive GT-1 binding site and differentially represses
RT the spinach rps1 promoter in transgenic tobacco
RL J Biol Chem 269:16626-16630 (1994)
RD PubMed: 8206981;
XX
RA Villain P, Mache R, Zhou DX
RT The mechanism of GT element-mediated cell type-specific
RT transcriptional control
RL J Biol Chem 271:32593-32598 (1996)
RD PubMed: 8955086;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
AGTTAGTTAAAAGA
//
ID SITEIIAOSPCNA
XX
AC S000216
XX
DT 11-May-2006 (last modified) kehi
XX
DE "Site IIa" of rice (O.s.) PCNA (proliferating cell nuclear
DE antigen) gene; Found at -197 to -188; Binding site for two
DE nuclear proteins, PCF1 and PCF2 (Kosugi and Ohashi, 1997);
DE Suggested to be involved in meristematic tissue-specific
DE expression; Resemble the conserved motif (T/GGTCCCAT) found in
DE promoter regions of auxin-regulated genes; See S000026
DE (AUXREPSIAA4);
XX
KW PCNA; Site IIa; meristem; tissue-specific;
XX
OS rice (Oryza sativa)
XX
RA Kosugi S, Suzuka I, Ohashi Y
RT Two of three promoter elements identified in a rice gene for
RT proliferating cell nuclear antigen are essential for meristematic
RT tissue-specific expression
RL Plant J 7:877-886 (1995)
RD PubMed: 7599648;
XX
RA Kosugi S, Ohashi Y
RT PCF1 and PCF2 specifically bind to cis elements in the rice
RT proliferating cell nuclear antigen gene
RL Plant Cell 9:1607-1619 (1997)
RD PubMed: 9338963;
XX
RA Zhou DX
RT Regulatory mechanism of plant gene transcription by GT-elements
RT and GT-factors
RL Trends in Plant Science 4:210-214 (1999)
RC Review
RD PubMed: 10366876
XX
SQ
TGGGCCCGT
//
ID SITEIIATCYTC
XX
AC S000474
XX
DT 01-August-2006 (last modified) kehi
XX
DE "Site II element" found in the promoter regions of cytochrome
DE genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and
DE -156 from the translational starts sites (Welchen et al., 2005);
DE Y=C/T; See also S000308; Overrepresented in the promoters of
DE nuclear genes encoding components of the oxidative
DE phosphorylation (OxPhos) machinery from both Arabidopsis and rice
DE (Welchen and Gonzalez, 2006);)
XX
KW cytochrome; TCP-domain; meristem; oxidative phosphorylation;
XX
OS Arabidopsis thaliana; Oryza sativa (rice);
XX
RA Welchen E, Gonzalez DH.
RT Differential expression of the Arabidopsis cytochrome c genes
RT Cytc-1 and Cytc-2. Evidence for the involvement of TCP-domain
RT protein-binding elements in anther- and meristem-specific
RT expression of the Cytc-1 gene.
RL Plant Physiol.139: 88-100 (2005)
RD PubMed: 16113211
XX
RA Welchen E, Gonzalez DH.
RT Overrepresentation of Elements Recognized by TCP-Domain
RT Transcription Factors in the Upstream Regions of Nuclear Genes
RT Encoding Components of the Mitochondrial Oxidative
RT Phosphorylation Machinery.
RL Plant Physiol. 141:540-545 (2006)
RC in silico
RD PubMed: 16760496
XX
SQ
TGGGCY
//
ID SITEIIBOSPCNA
XX
AC S000217
XX
DT 10-May-1998 (last modified) kehi
XX
DE "Site IIb" of rice PCNA (proliferating cell nuclear antigen)
DE gene; Found at -178 to -169; Binding site for two nuclear
DE proteins, PCF1 and PCF2 (Kosugi and Ohashi, 1997); Suggested to
DE be involved in meristematic tissue-specific expression; Resemble
DE the conserved motif (T/GGTCCCAT) found in promoter regions of
DE auxin-regulated genes; See S000026 (AUXREPSIAA4);
XX
KW PCNA; Site IIb; meristem; tissue-specific
XX
OS rice (Oryza sativa)
XX
RA Kosugi S, Suzuka I, Ohashi Y
RT Two of three promoter elements identified in a rice gene for
RT proliferating cell nuclear antigen are essential for meristematic
RT tissue-specific expression
RL Plant J 7:877-886 (1995)
RD PubMed: 7599648;
XX
RA Kosugi S, Ohashi Y
RT PCF1 and PCF2 specifically bind to cis elements in the rice
RT proliferating cell nuclear antigen gene
RL Plant Cell 9:1607-1619 (1997)
RD PubMed: 9338963;
XX
SQ
TGGTCCCAC
//
ID SITEIOSPCNA
XX
AC S000224
XX
DT 10-May-1998 (last modified) kehi
XX
DE "Site I" of rice (O.s.) PCNA (proliferating cell nuclear antigen)
DE gene; Found at -201 to -194; Resemble G-box; May contribute in
DE part to transcriptional activation;
XX
KW PCNA; Site I; G-box; meristem;
XX
OS rice (Oryza sativa)
XX
RA Kosugi S, Suzuka I, Ohashi Y
RT Two of three promoter elements identified in a rice gene for
RT proliferating cell nuclear antigen are essential for meristematic
RT tissue-specific expression
RL Plant J 7:877-886 (1995)
RD PubMed: 7599648;
XX
SQ
CCAGGTGG
//
ID SORLIP1AT
XX
AC S000482
XX
DT 18-November-2005 (last modified) kehi
XX
DE one of "Sequences Over-Represented in Light-Induced Promoters
DE (SORLIPs) in Arabidopsis; Computationally identified phyA-induced
DE motifs; SORLIP 1 is most over-represented, and most statistically
DE singnificant; See also S000483, S000484, S000485, S000486 (all
DE SORLIPs), and also S000487, S000488, S000489, S000490 (all
DE SORLREPs); Over-represented in light-induced cotyledon and root
DE common genes and root-specific genes (Jiao et al. 2005; see
DE S000486);
XX
KW phyA; phytochrome; light;
XX
OS Arabidopsis thaliana
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
RA Jiao Y, Ma L, Strickland E, Deng XW.
RT Conservation and Divergence of Light-Regulated Genome Expression
RT Patterns during Seedling Development in Rice and Arabidopsis.
RL Plant Cell. 17: 3239-3256 (2005)
RC in silico;
RD PubMed: 16284311
XX
SQ
GCCAC
//
ID SORLIP2AT
XX
AC S000483
XX
DT 18-November-2005 (last modified) kehi
XX
DE one of "Sequences Over-Represented in Light-Induced Promoters
DE (SORLIPs) in Arabidopsis; Computationally identified phyA-induced
DE motifs; See also S000482, S000484, S000485, S000486 (all
DE SORLIPs), and also S000487, S000488, S000489, S000490 (all
DE SORLREPs);
XX
KW phyA; phytochrome; light;
XX
OS Arabidopsis thaliana
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
SQ
GGGCC
//
ID SORLIP3AT
XX
AC S000484
XX
DT 18-November-2005 (last modified) kehi
XX
DE one of "Sequences Over-Represented in Light-Induced Promoters
DE (SORLIPs) in Arabidopsis; Computationally identified phyA-induced
DE motifs; See also S000482, S000483, S000485, S000486 (all
DE SORLIPs), and also S000487, S000488, S000489, S000490 (all
DE SORLREPs);
XX
KW phyA; phytochrome; light;
XX
OS Arabidopsis thaliana
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
SQ
CTCAAGTGA
//
ID SORLIP4AT
XX
AC S000485
XX
DT 18-November-2005 (last modified) kehi
XX
DE one of "Sequences Over-Represented in Light-Induced Promoters
DE (SORLIPs) in Arabidopsis; Computationally identified phyA-induced
DE motifs; See also S000482, S000483, S000484, S000486 (all
DE SORLIPs), and also S000487, S000488, S000489, S000490 (all
DE SORLREPs);
XX
KW phyA; phytochrome; light;
XX
OS Arabidopsis thaliana
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
SQ
GTATGATGG
//
ID SORLIP5AT
XX
AC S000486
XX
DT 18-November-2005 (last modified) kehi
XX
DE one of "Sequences Over-Represented in Light-Induced Promoters
DE (SORLIPs) in Arabidopsis; Computationally identified phyA-induced
DE motifs; See also S000482, S000483, S000484, S000485 (all
DE SORLIPs), and also S000487, S000488, S000489, S000490 (all
DE SORLREPs); Over-represented in both light-induced
DE cotyledon-specific and root-specific genes (Jiao et al. 2005; see
DE S000482);
XX
KW phyA; phytochrome; light;
XX
OS Arabidopsis thaliana
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
RA Jiao Y, Ma L, Strickland E, Deng XW.
RT Conservation and Divergence of Light-Regulated Genome Expression
RT Patterns during Seedling Development in Rice and Arabidopsis.
RL Plant Cell. 17: 3239-3256 (2005)
RC in silico;
RD PubMed: 16284311
XX
SQ
GAGTGAG
//
ID SORLREP2AT
XX
AC S000487
XX
DT 18-November-2005 (last modified) kehi
XX
DE one of "Sequences Over-Represented in Light-Repressed Promoters
DE (SORLREPs) in Arabidopsis; Computationally identified
DE phyA-repressed motifs; See also S000488, S000489, S000490 (all
DE SORLREPs); and also S000482, S000483, S000484, S000485, S000486
DE (all SORLIPs);
XX
KW phyA; phytochrome; light;
XX
OS Arabidopsis thaliana
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
SQ
ATAAAACGT
//
ID SORLREP3AT
XX
AC S000488
XX
DT 18-November-2005 (last modified) kehi
XX
DE one of "Sequences Over-Represented in Light-Repressed Promoters
DE (SORLREPs) in Arabidopsis; Computationally identified
DE phyA-repressed motifs; See also S000487, S000489, S000490 (all
DE SORLREPs); and also S000482, S000483, S000484, S000485, S000486
DE (all SORLIPs);
XX
KW phyA; phytochrome; light;
XX
OS Arabidopsis thaliana
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
SQ
TGTATATAT
//
ID SORLREP4AT
XX
AC S000489
XX
DT 18-November-2005 (last modified) kehi
XX
DE one of "Sequences Over-Represented in Light-Repressed Promoters
DE (SORLREPs) in Arabidopsis; Computationally identified
DE phyA-repressed motifs; Common in circadian-regulated promoters;
DE See also S000487, S000488, S000490 (all SORLREPs); and also
DE S000482, S000483, S000484, S000485, S000486 (all SORLIPs);
XX
KW phyA; phytochrome; light;
XX
OS Arabidopsis thaliana
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
SQ
CTCCTAATT
//
ID SORLREP5AT
XX
AC S000490
XX
DT 18-November-2005 (last modified) kehi
XX
DE one of "Sequences Over-Represented in Light-Repressed Promoters
DE (SORLREPs) in Arabidopsis; Computationally identified
DE phyA-repressed motifs; See also S000487, S000488, S000489 (all
DE SORLREPs); and also S000482, S000483, S000484, S000485, S000486
DE (all SORLIPs);
XX
KW phyA; phytochrome; light;
XX
OS Arabidopsis thaliana
XX
RA Hudson ME, Quail PH.
RT Identification of promoter motifs involved in the network of
RT phytochrome A-regulated gene expression by combined analysis of
RT genomic sequence and microarray data.
RL Plant Physiol. 133: 1605-1616 (2003)
RC in silico; over-represented motif;
RD PubMed: 14681527
XX
SQ
TTGCATGACT
//
ID SP8BFIBSP8AIB
XX
AC S000183
XX
DT 16-Feb-2001 (last modified) seki
XX
DE One of SPBF binding site (SP8a); Found at -155 of gSPO-A1
DE (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene
DE in sweet potato (I.b.); SP8BF recognizes both SP8a and SP8b
DE sequences; See also SP8BFIBSP8BIB (S000184); SP8BF activity is
DE also found in tobacco; "SP8a" found in the 5' upstream region of
DE three differnt genes coding for sporamin and beta-amylase;
DE Binding site of SPF1; SPF1 also binds to the SP8b; See S000184;
XX
KW SP8; SP8a; SP8BF; sporamin; beta-amylase; amylase; tuberous root;
KW root;
XX
OS sweet potato (Ipomoea batatas);
XX
RA Ishiguro S, Nakamura K
RT The nuclear factor SP8BF binds to the 5'-upstream regions of
RT three different genes coding for major proteins of sweet potato
RT tuberous roots
RL Plant Mol Biol 18:97-108 (1992)
RD PubMed: 1531033;
XX
RA Ishiguro S, Nakamura K
RT Characterization of a cDNA encoding a novel DNA-binding protein,
RT SPF1, that recognizes SP8 sequences in the 5' upstream regions of
RT genes coding for sporamin and beta-amylase from sweet potato
RL Mol Gen Genet 244: 563-571 (1994)
RD PubMed: 7969025;
XX
SQ
ACTGTGTA
//
ID SP8BFIBSP8BIB
XX
AC S000184
XX
DT 16-Feb-2001 (last modified) seki
XX
DE One of SPBF binding site (SP8b); Found at -330, -220, and -200 of
DE gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase)
DE gene; SP8BF recognizes both SP8a and SP8b sequences; See also
DE SP8BFIBSP8AIB (S000183); SP8BF activity is also found in tobacco;
DE "SP8b" found in the 5' upstream region of three differnt genes
DE coding for sporamin and beta-amylase; Binding site of SPF1; SPF1
DE also binds to the SP8b; See S000184;
XX
KW SP8; SP8b; SP8BF; sporamin; beta-a,ylase; amylase; tuberous root;
KW tuber; root;
XX
OS sweet potato (Ipomoea batatas);
XX
RA Ishiguro S, Nakamura K
RT The nuclear factor SP8BF binds to the 5'-upstream regions of
RT three different genes coding for major proteins of sweet potato
RT tuberous roots
RL Plant Mol Biol 18:97-108 (1992)
RD PubMed: 1531033;
XX
RA Ishiguro S, Nakamura K
RT Characterization of a cDNA encoding a novel DNA-binding protein,
RT SPF1, that recognizes SP8 sequences in the 5' upstream regions of
RT genes coding for sporamin and beta-amylase from sweet potato
RL Mol Gen Genet 244: 563-571 (1994)
RD PubMed: 7969025;
XX
SQ
TACTATT
//
ID SPHCOREZMC1
XX
AC S000154
XX
DT 16-Feb-2001 (last modified) seki
XX
DE Core of Sph element; Core motif of Sph element in maize (Z.m.) C1
DE gene to which maize VP1 (viviparous 1) protein binds;
DE VP1-responsive element; see RYREPEAT4 (S000010); VP1 gene is
DE specifically required for expression of the maturation program in
DE seed development; VP1 is a novel transcription factor possibly
DE involved in potentiation of a seed-specific hormone response;
XX
KW Sph motif; C1; VP1; ABA; seed;
XX
OS maize (Zea mays);
XX
RA Suzuki M, Kao CY, McCarty DR
RT The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA
RT binding activity.
RL Plant Cell 9:799-807 (1997)
RD PubMed: 9165754;
XX
RA McCarty DR, Hattori T, Carson CB, Vasil V, Lazar M, Vasil IK
RT The Viviparous-1 developmental gene of maize encodes a novel
RT transcriptional activator
RL Cell 66: 895-905 (1991)
RD PubMed: 1889090;
XX
SQ
TCCATGCAT
//
ID SPHZMC1
XX
AC S000293
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "Sph element" found in the maize (Z.m.) C1 gene promoter; Located
DE between -142 and -132; Essential for VP1 activation; See S000154,
DE S000294; VP1 gene is specifically required for expression of the
DE maturation program in seed development; VP1 is a novel
DE transcription factor possibly involved in potentiation of a
DE seed-specific hormone response;
XX
KW C1; anthocyanin pathway; ABA; VP1; light; Sph; seed;
XX
OS maize (Zea mays)
XX
RA Kao CY, Cocciolone SM, Vasil IK, McCarty DR
RT Localization and interaction of the cis-acting elements for
RT abscisic acid, VIVIPAROUS1, and light activation of the C1 gene
RT of maize
RL Plant Cell 8: 1171-1179 (1996)
RD PubMed: 8768375
XX
RA McCarty DR, Hattori T, Carson CB, Vasil V, Lazar M, Vasil IK
RT The Viviparous-1 developmental gene of maize encodes a novel
RT transcriptional activator
RL Cell 66: 895-905 (1991)
RD PubMed: 1889090;
XX
SQ
CGTCCATGCAT
//
ID SREATMSD
XX
AC S000470
XX
DT 13-August-2005 (last modified) kehi
XX
DE "sugar-repressive element (SRE)" found in 272 of the 1592
DE down-regulated genes after main stem decapitation in Arabidopsis;
DE See also S000471, S000472;
XX
KW Axillary bud outgrowth;
XX
OS Arabidopsis thaliana
XX
RA Tatematsu K, Ward S, Leyser O, Kamiya Y, Nambara E.
RT Identification of cis-elements that regulate gene expression
RT during initiation of axillary bud outgrowth in Arabidopsis.
RL Plant Physiology 138: 757-766 (2005)
RD PubMed: 15908603
XX
SQ
TTATCC
//
ID SRENTTTO1
XX
AC S000271
XX
DT 15-Oct-1999 (last modified) kehi
XX
DE Stress responsive element (SRE) in tobacco (N.t.) retrotransposon
DE Tto1; A 13 bp cis-regulatory element in the LTR promoter of the
DE tobacco retrotransposon Tto1; Involved in responsiveness to
DE tissue culture, wounding, methyl jasmonate and fungal elicitors;
DE Contains a conserved motif, Box L;
XX
KW retrotransposon; LTR; Tto1; wounding; stress; tissue culture;
KW methyl jasmonate; fungal elicitor; Box L;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Takeda S, Sugimoto K, Otsuki H, Hirochika H
RT A 13-bp cis-regulatory element in the LTR promoter of the tobacco
RT retrotransposon Tto1 is involved in responsiveness to tissue
RT culture, wounding, methyl jasmonate and fungal elicitors
RL Plant J 18:383-393 (1999)
RD PubMed: 10406122;
XX
SQ
TGGTAGGTGAGAT
//
ID SURE1STPAT21
XX
AC S000186
XX
DT 17-May-1998 (last modified) kehi
XX
DE Sucrose Responsive Element (SURE); A motif conserved among genes
DE regulated by sucrose; See also SURE2STPAT21 (S000185); Found
DE between -184 and -156 bp in the patatin (a major tuber protein)
DE gene promoter of potato (S.t.);
XX
KW SURE; SURE 1; patatin; sucrose; tuber; root;
XX
OS potato (Solanum tuberosum);
XX
RA Grierson C, Du JS, Zabala MT, Beggs K, Smith C, Holdsworth M,
RA Bevan M
RT Separate cis sequences and trans factors direct metabolic and
RT developmental regulation of a potato tuber storage protein gene
RL Plant J 5:815-826 (1994)
RD PubMed: 8054988;
XX
SQ
AATAGAAAA
//
ID SURE2STPAT21
XX
AC S000185
XX
DT 17-May-1998 (last modified) kehi
XX
DE Sucrose Responsive Element 2 (SURE2); A motif conserved among
DE genes regulated by sucrose; See also SURE1ST (S000186); Found
DE between -184 and -156 bp in the patatin (a major tuber protein)
DE gene promoter of potato (S.t.);
XX
KW SURE; SURE 2; patatin; sucrose; tuber; root;
XX
OS potato (Solanum tuberosum);
XX
RA Grierson C, Du JS, Zabala MT, Beggs K, Smith C, Holdsworth M,
RA Bevan M
RT Separate cis sequences and trans factors direct metabolic and
RT developmental regulation of a potato tuber storage protein gene
RL Plant J 5:815-826 (1994)
RD PubMed: 8054988;
XX
SQ
AATACTAAT
//
ID SUREAHVISO1
XX
AC S000441
XX
DT 28-Jan-2004 (last modified) kehi
XX
DE "SURE-a"; Sugar-responsive element found in barley (H. vulgare)
DE iso1 (encoding isoamylase1) promoter at -597 to -573; Highly
DE similar to SURE of potato class-1 putative promoter; SUSIBA2
DE (WRKY transcription factor) binding site;
XX
KW sugar; SURE; patatin; WRKY; isoamylase; SUSIBA";
XX
OS Hordeum vulgare (barley)
XX
RA Sun C, Palmqvist S, Olsson H, Boren M, Ahlandsberg S, Jansson C.
RT A novel WRKY transcription factor, SUSIBA2, participates in sugar
RT signaling in barley by binding to the sugar-responsive elements
RT of the iso1 promoter.
RL Plant Cell 15: 2076-2092 (2003)
RD PubMed: 12953112;
XX
SQ
AAAACTAAGAAAGACCGATGGAAAA
//
ID SURECOREATSULTR11
XX
AC S000499
XX
DT 02-August-2006 (last modified) kehi
XX
DE Core of sulfur-responsive element (SURE) found in the promoter of
DE SULTR1;1 high-affinity sulfate transporter gene in Arabidopsis;
DE SURE contains auxin response factor (ARF) binding sequence
DE (GAGACA)(see S000270 ARF:TGTCTC; its complementary seq is
DE GAGACA), and this core sequence is a part of it; this core seq is
DE involved in -S response; Beware of other SURE (sucrose responsive
DE element) !!;
XX
KW sulfate uptake; sulfate transporter; ARF; -S; S;
XX
OS Arabidopsis thaliana
XX
RA Maruyama-Nakashita A, Nakamura Y, Watanabe-Takahashi A, Inoue E,
RA Yamaya T, Takahashi H.
RT Identification of a novel cis-acting element conferring sulfur
RT deficiency response in Arabidopsis roots.
RL Plant J. 42: 305-314 (2005).
RD PubMed: 15842617
XX
SQ
GAGAC
//
ID SV40COREENHAN
XX
AC S000123
XX
DT 17-May-1998 (last modified) kehi
XX
DE "SV40 core enhancer"; Similar sequences found in rbcS genes;
DE W=A/T;
XX
KW enhancer; SV40; core;
XX
OS virus; plant; pea (Pisum sativum); Arabidopsis thaliana;
XX
RA Weiher H, Konig M, Gruss P
RT Multiple point mutations affecting the simian virus 40 enhancer.
RL Science 219:626-631 (1983)
RD PubMed: 6297005;
XX
RA Green PJ, Kay SA, Chua N-H
RT Sequence-specific interactions of a pea nuclear factor with
RT light-responsive elements upstream of the rbcs3A gene.
RL EMBO J 6:2543-2549 (1987)
RD PubMed: 3678200;
XX
RA Donald RGK, Cashmore AR
RT Mutation of either G box or I box sequences profoundly affects
RT expression from the Arabidopsis rbcs-1A promoter.
RL EMBO J 9:1717-1726 (1990)
RD PubMed: 2347304;
XX
SQ
GTGGWWHG
//
ID T/GBOXATPIN2
XX
AC S000458
XX
DT 29-November-2004 (last modified) kehi
XX
DE "T/G-box" found in tomato proteinase inhibitor II (pin2) and
DE leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA)
DE induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10
DE proteins specifically recognaize this motif (Boter et al.,
DE 2004);
XX
KW T/G-box; JA; pin2; LAP; MYC; wounding;
XX
OS Lycopersicon esculentum (tomato); Arabidopsis thaliana;
XX
RA Boter M, Ruiz-Rivero O, Abdeen A, Prat S.
RT Conserved MYC transcription factors play a key role in jasmonate
RT signaling both in tomato and Arabidopsis.
RL Genes Dev 18: 1577-1591 (2004).
RD PubMed: 15231736
XX
SQ
AACGTG
//
ID TAAAGSTKST1
XX
AC S000387
XX
DT 20-Feb-2002 (last modified) uchi
XX
DE TAAAG motif found in promoter of Solanum tuberosum (S.t.) KST1
DE gene; Target site for trans-acting StDof1 protein controlling
DE guard cell-specific gene expression; KST1 gene encodes a K+
DE influx channel of guard cells; See S000265;
XX
KW KST1; Dof; guard cell;
XX
OS Solanum tuberosum (potato)
XX
RA Plesch G, Ehrhardt T, Mueller-Roeber B
RT Involvement of TAAAG elements suggests a role for Dof
RT transcription factors in guard cell-specific gene expression
RL Plant J 28: 455-464 (2001)
RD PubMed: 11737782;
XX
SQ
TAAAG
//
ID TACBBFNTEAS4
XX
AC S000257
XX
DT 14-0ct-1999 (last modified) kehi
XX
DE TacBBF (TAC box binding factor) binding site in tobacco (N.t.)
DE 5-epi-aristolochene synthase (EAS4) gene; Required for
DE elicitor-inducibility; EAS is involved in sesquiterpene
DE phytoalexin biosynthesis; Found between -245 and -232; Appears to
DE function as a silencer or repressor of EAS gene expression;
XX
KW EAS; elicitor; TAC box; TacBBF; sesquiterpene; phytoalexin;
KW silencer; repressor;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Newman JD, Yin S, Chappell J
RT Characterization of the TAC box, a cis-element within an
RT elicitor-inducible sesquiterpene cyclase promoter
RL Plant J 16:1-12 (1998)
XX
SQ
ACTCTACAGTACTC
//
ID TATABOX1
XX
AC S000108
XX
DT 12-April-2004 (last modified) kehi
XX
DE "TATA box"; TATA box found in the 5'upstream region of rice
DE alpha-amylase; TATA box found in beta-phaseolin promoter (Grace
DE et al.); sequence and spacing of TATA box elements are critical
DE for accurate initiation (Grace et al.);
XX
KW amylase; rice; TATA; seed; phaseolin;
XX
OS rice (Oryza sativa); bean (Phaseolus vulgaris);
XX
RA Grace ML, Chandrasekharan MB, Hall TC, Crowe AJ.
RT Sequence and spacing of TATA box elements are critical for
RT accurate initiation from the beta-phaseolin promoter.
RL J Biol Chem. 279:8102-8110 (2004).
RD PubMed: 14660650
XX
SQ
CTATAAATAC
//
ID TATABOX2
XX
AC S000109
XX
DT 12-April-2004 (last modified) kehi
XX
DE "TATA box"; TATA box found in the 5'upstream region of pea legA
DE gene; sporamin A of sweet potato; TATA box found in
DE beta-phaseolin promoter (Grace et al.); sequence and spacing of
DE TATA box elements are critical for accurate initiation (Grace et
DE al.);
XX
KW TATA; legA; phaseolin;
XX
OS pea (Pisum sativum); tobacco (Nicotiana tabacum); bean (Phaseolus
OS vulgaris);
XX
RA Shirsat A, Wilford N, Croy R, Boulter D
RT Sequences responsible for the tissue specific promoter activity
RT of a pea legumin gene in tobacco.
RL Mol Gen Genet 215:326-331 (1989)
RD PubMed: 2710102;
XX
RA Grace ML, Chandrasekharan MB, Hall TC, Crowe AJ.
RT Sequence and spacing of TATA box elements are critical for
RT accurate initiation from the beta-phaseolin promoter.
RL J Biol Chem. 279:8102-8110 (2004).
RD PubMed: 14660650
XX
SQ
TATAAAT
//
ID TATABOX3
XX
AC S000110
XX
DT 17-Jun-1997 (last modified) kehi
XX
DE "TATA box"; TATA box found in the 5'upstream region of sweet
DE potato sporamin A gene;
XX
KW TATA; sporamin;
XX
OS sweet potato (Ipomoea batatas);
XX
SQ
TATTAAT
//
ID TATABOX4
XX
AC S000111
XX
DT 12-April-2004 (last modified) kehi
XX
DE "TATA box"; TATA box found in the 5'upstream region of sweet
DE potato sporamin A gene; TATA box found in beta-phaseolin promoter
DE (Grace et al.); sequence and spacing of TATA box elements are
DE critical for accurate initiation (Grace et al.);
XX
KW TATA; sporamin; phaseolin;
XX
OS sweet potato (Ipomoea batatas); bean (Phaseolus vulgaris)
XX
RA Grace ML, Chandrasekharan MB, Hall TC, Crowe AJ.
RT Sequence and spacing of TATA box elements are critical for
RT accurate initiation from the beta-phaseolin promoter.
RL J Biol Chem. 279:8102-8110 (2004).
RD PubMed: 14660650
XX
SQ
TATATAA
//
ID TATABOX5
XX
AC S000203
XX
DT 17-May-1998 (last modified) kehi
XX
DE "TATA box"; TATA box found in the 5'upstream region of pea (Pisum
DE sativum) glutamine synthetase gene; a functional TATA element by
DE in vivo analysis;
XX
KW TATA; glutamine; synthetase;
XX
OS pea (Pisum sativum);
XX
RA Tjaden G, Edwards JW, Coruzzi GM
RT cis elements and trans-acting factors affecting regulation of a
RT nonphotosynthetic light-regulated gene for chloroplast glutamine
RT synthetase
RL Plant Physiol 108:1109-1117 (1995)
RD PubMed: 7630938; GenBank: U22971;
XX
SQ
TTATTT
//
ID TATABOXOSPAL
XX
AC S000400
XX
DT 27-Aug-2002 (last modified) uchi
XX
DE Binding site for OsTBP2, found in the promoter of rice pal gene
DE encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA
DE binding and bending activities of OsTBP2 and synergistically
DE enhanced OsTBP2-mediated transcription from the pal promoter;
XX
KW TBP; TFIIB; pal; DNA binding and bending;
XX
OS Oryza sativa (rice)
XX
RA Zhu Q, Ordiz MI, Dabi T, Beachy RN, Lamb C
RT Rice TATA binding protein interacts functionally with
RT transcription factor IIB and the RF2a bZIP transcriptional
RT activator in an enhanced plant in vitro transcription system
RL Plant Cell 14: 795-803 (2002)
RD PubMed: 11971135;
XX
SQ
TATTTAA
//
ID TATAPVTRNALEU
XX
AC S000340
XX
DT 21-May-2002 (last modified) uchi
XX
DE "TATA-like motif"; A TATA-like sequence found in Phaseolus
DE vulgaris tRNALeu gene promoter; Frequently observed upstream of
DE plant tRNA genes; Found in maize glycolytic
DE glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter;
DE Binding site of TATA binding protein (TBP);
XX
KW TATA; tRNA; re-initiation; GapC4; Myb; TATA binding protein;
KW TBP;
XX
OS Phaseolus vulgaris; maize (Zea mays)
XX
RA Yukawa Y, Sugita M, Choisne N, Small I, Sugiura M
RT The TATA motif, the CAA motif and the poly(T) transcription
RT termination motif are all important for transcription
RT re-initiation on plant tRNA genes
RL Plant J 22: 439-447 (2000)
RD PubMed: 10849359;
XX
RA Geffers R, Sell S, Cerff R, Hehl R
RT The TATA box and a Myb binding site are essential for anaerobic
RT expression of a maize GapC4 minimal promoter in tobacco
RL Biochim Biophys Acta 1521: 120-125 (2001)
RD PubMed: 11690643;
XX
SQ
TTTATATA
//
ID TATCCACHVAL21
XX
AC S000416
XX
DT 10-May-2006 (last modified) kehi
XX
DE "TATCCAC box" is a part of the conserved cis-acting response
DE complex (GARC) that most often contain three sequence motifs, the
DE TAACAAA box (see S000181), or GA-responsive element (GARE); the
DE pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which
DE are necessary for a full GA response;
XX
KW gibberellin; GA; GARC;
XX
OS barley (Hordeum vulgare)
XX
RA Isabel-LaMoneda I, Diaz I, Martinez M, Mena M, Carbonero P.
RT SAD: a new DOF protein from barley that activates transcription
RT of a cathepsin B-like thiol protease gene in the aleurone of
RT germinating seeds.
RL Plant J. 33: 329-340 (2003)
RD PubMed: 12535346;
XX
RA Martinez M, Rubio-Somoza I, Fuentes R, Lara P, Carbonero P, Diaz
RA I.
RT The barley cystatin gene (Icy) is regulated by DOF transcription
RT factors in aleurone cells upon germination.
RL J Exp Bot. 56: 547-556 (2005)
RD PubMed: 15611149
XX
SQ
TATCCAC
//
ID TATCCAOSAMY
XX
AC S000403
XX
DT 15-September-2006 (last modified) kehi
XX
DE "TATCCA" element found in alpha-amylase promoters of rice (O.s.)
DE at positions ca.90 to 150bp upstream of the transcription start
DE sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which
DE mediate sugar and hormone regulation of alpha-amylase gene
DE expression; See also S000021 (AMYBOX2); S000256 (TATCCAY motif);
XX
KW alpha-amylase; MYB proteins; gibberellin; GA; sugar starvation;
XX
OS Oryza sativa (rice)
XX
RA Lu CA, Ho THD, Ho SL, Yu SM
RT Three Novel MYB Proteins with One DNA Binding Repeat Mediate
RT Sugar and Hormone Regulation of alpha-Amylase Gene Expression
RL Plant Cell 14: 1963-1980 (2002)
RD PubMed: 12172034;
XX
RA Lu CA, Lim EK, Yu SM.
RT Sugar response sequence in the promoter of a rice alpha-amylase
RT gene serves as a transcriptional enhancer.
RL J Biol Chem. 273:10120-10131(1998).
RD PubMed: 9553059
XX
RA Chen PW, Chiang CM, Tseng TH, Yu SM
RT Interaction between Rice MYBGA and the Gibberellin Response
RT Element Controls Tissue-Specific Sugar Sensitivity of
RT alpha-Amylase Genes.
RL PLANT CELL 18: 2326-2340 (2006).
RD PubMed: 16905658
XX
SQ
TATCCA
//
ID TATCCAYMOTIFOSRAMY3D
XX
AC S000256
XX
DT 01-August-2006 (last modified) kehi
XX
DE "TATCCAY motif" found in rice (O.s.) RAmy3D alpha-amylase gene
DE promoter; Y=T/C; a GATA motif as its antisense sequence; TATCCAY
DE motif and G motif (see S000130) are responsible for sugar
DE repression (Toyofuku et al. 1998);
XX
KW GATA; amylase; sugar; repression;
XX
OS rice (Oryza sativa)
XX
RA Toyofuku K, Umemura T, Yamaguchi J
RT Promoter elements required for sugar-repression of the RAmy3D
RT gene for alpha-amylase in rice
RL FEBS Lett 428:275-280 (1998)
RD PubMed: 9654148;
XX
RA Rubio-Somoza I, Martinez M, Abraham Z, Diaz I, Carbonero P.
RT Ternary complex formation between HvMYBS3 and other factors
RT involved in transcriptional control in barley seeds.
RL Plant J. 47: 269-281 (2006)
RD PubMed: 16762033
XX
SQ
TATCCAY
//
ID TBOXATGAPB
XX
AC S000383
XX
DT 23-Aug-2001 (last modified) uchi
XX
DE "Tbox" found in the Arabidopsis thaliana (A.T.) GAPB gene
DE promoter; Located between -94 and -89 (T1) and also between -84
DE and -79 (T2); Mutations in the "Tbox" resulted in reductions of
DE light-activated gene transcription; GAPB encodes the B subunit of
DE chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of
DE A.T.;
XX
KW GAPB; glyceraldehyde-3-phosphate dehydrogenase; light-activated
KW transcription;
XX
OS Arabidopsis thaliana
XX
RA Chan CS, Guo L, Shih MC
RT Promoter analysis of the nuclear gene encoding the chloroplast
RT glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis
RT thaliana
RL Plant Mol Biol 46: 131-141 (2001)
RD PubMed: 11442054;
XX
SQ
ACTTTG
//
ID TCA1MOTIF
XX
AC S000159
XX
DT 17-May-1998 (last modified) kehi
XX
DE TCA-1 (tobacco nuclear protein 1) binding site; Related to
DE salicylic acid-inducible expression of many genes; Found in
DE barley beta-1,3-glucanase and over 30 different plant genes which
DE are known to be induced by one or more forms of stress; A similar
DE sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon
DE promoter (Mhiri et al., 1997);
XX
KW SA; salicylic acid; stress; TCA-1;
XX
OS barley (Hordeum vulgare); tobacco (Nicotiana tabacum);
XX
RA Goldsbrough AP, Albrecht H, Stratford R
RT Salicylic acid-inducible binding of a tobacco nuclear protein to
RT a 10 bp sequence which is highly conserved amongst
RT stress-inducible genes.
RL Plant J 3:563-571 (1993)
RD PubMed: 8220463;
XX
RA Mhiri C, Morel JB, Verbhettes S, Casacuberta JM, Lucas H,
RA Graandbastien MA
RT The promoter of the tobacco Tnt1 retrotransposon is induced by
RT wounding and by abiotic stress
RL Plant Mol Biol 33:257-266 (1997)
RD PubMed: 9037144;
XX
SQ
TCATCTTCTT
//
ID TDBA12NTCHN50
XX
AC S000266
XX
DT 22-June-2006 (last modified) kehi
XX
DE TDBA12 binding site found in tobacco (N.t.) basic class I
DE chitinase gene (CHN50); Elicitor response element; TDBA12 belongs
DE to WRKY proteins that appear to be unique to plants; TDBA12 is
DE activated by TMV infection in resistant tobacco plant and by
DE plant defense signal molecule SA;
XX
KW TDBA12; chitinase; CHN50; WRKY; HR; TMV; SAR; elicitor;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Yang P, Chen C, Wang Z, Fan B, Chen Z
RT A pathogen- and salicylic acid-induced WRKY DNA-binding activity
RT recognizes the elicitor response element of the tobacco class I
RT chitinase gene promoter
RL Plant J 18:141-149 (1999)
XX
RA Eulgem T, Rushton PJ, Robatzek S, Somssich IE
RT The WRKY superfamily of plant transcription factors
RL Trends Plant Sci 5: 199-206 (2000)
RC Review
RD PubMed: 10785665;
XX
SQ
TGACTTTCTGAC
//
ID TE2F2NTPCNA
XX
AC S000397
XX
DT 05-November-2005 (last modified) kehi
XX
DE "te2f-2" found in the promoter of tobacco PCNA gene; Located
DE between -84 and -77; Binding site of OsE2F1 and OsE2F2; Involved
DE in transcriptional activation in actively dividing cells and
DE tissue;
XX
KW E2F; PCNA; meristematic tissue; cell cycle;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Kosugi S, Ohashi Y
RT E2F sites that can interact with E2F proteins cloned from rice
RT are required for meristematic tissue-specific expression of rice
RT and tobacco proliferating cell nuclear antigen promoters
RL Plant J 29: 45-59 (2002)
RD PubMed: 12060226;
XX
SQ
ATTCCCGC
//
ID TEF1BOXATA1
XX
AC S000311
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "tef1 box" found in the Arabidopsis (A.t.) EF-1 alpha A1 gene
DE promoter; Conserved in the A.t. EF-1 alpha gene promoters;
DE Involved in the activation of EF-1 alpha gene; Involved in the
DE transcriptional activation of plant genes that are overexpressed
DE in cycling cells; Conserved in the promoters of genes for
DE products related to the translational apparatus;
XX
KW EF-1alpha; A1; tef1 box;
XX
OS Arabidopsis (Arabidopsis thaliana)
XX
RA Curie C, Liboz T, Bardet C, Gander E, Medale C, Axelos M, Lescure
RA B
RT Cis and Trans-acting elements involved in the activation of
RT Arabidopsis thaliana A1 gene encoding the translation elongation
RT factor EF-1alpha
RL Nucleic Acids Research 19: 1305-1310 (1991)
RD PubMed: 1840652;
XX
RA Regad F, Herve C, Marinx O, Bergounioux C, Tremousaygue D, Lescue
RA B
RT The tef1 box, a ubiquitous cis-acting element involved in the
RT activation of plant genes that are highly expressed in cycling
RT cells
RL Mol. Gen. Genet. 248: 703-711 (1995)
RD PubMed: 7476873;
XX
SQ
ACAGGGGCATAATGGTAATTTAAA
//
ID TEFBOXATEEF1AA1
XX
AC S000309
XX
DT 7-Sep-2000 (last modified) seki
XX
DE "tef-box" found in the Arabidopsis (A.t.) eEF1AA1 gene promoter;
DE An activating sequence associated with telo-box (S000308);
DE Required for the gene expression in root primordia; Acts
DE co-operatively with telo-box; See S000308;
XX
KW tef-box; telomere motifl eEF1A; root; primordia; telo-box;
XX
OS Arabidopsis (Arabidopsis thaliana)
XX
RA Tremousayque D, Manevski A, Bardet C, Lescure N, Lescure B
RT Plant interstitial telomere mitifs participate in the control of
RT gene expression in root meristems
RL Plant J 20: 553-561 (1999)
RD PubMed: 10652127;
XX
SQ
AGGGGCATAATGGTAA
//
ID TELOBOXATEEF1AA1
XX
AC S000308
XX
DT 05-November-2005 (last modified) kehi
XX
DE "telo-box" (telomere motif) found in the Arabidopsis (A.t.)
DE eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene
DE promoters; Found in the 5' region of numerous genes encoding
DE components of the translational apparatus; Required for the
DE activation of expression in root primordia; Acts co-operatively
DE with tef-box; Binding site of AtPur alpha-1; See S000309,
DE S000474;
XX
KW telo-box; telomere motif; eEF1A; root; primordia; tef-box; Pur
KW alpha-1;
XX
OS Arabidopsis (Arabidopsis thaliana)
XX
RA Tremousayque D, Manevski A, Bardet C, Lescure N, Lescure B
RT Plant interstitial telomere mitifs participate in the control of
RT gene expression in root meristems
RL Plant J 20: 553-561 (1999)
RD PubMed: 10652127;
XX
RA Axelos M, Bardet C, Liboz T, Va Thai AL, Curie C, Lescure B
RT The gene family encoding the Arabidopsis thaliana translation
RT elongation factor EF-1alpha: Molecular clonig, characterization
RT and expression.
RL Mol Gen Genet 219: 106-112 (1989)
RD PubMed: 2615757
XX
RA Welchen E, Gonzalez DH.
RT Differential expression of the Arabidopsis cytochrome c genes
RT Cytc-1 and Cytc-2. Evidence for the involvement of TCP-domain
RT protein-binding elements in anther- and meristem-specific
RT expression of the Cytc-1 gene.
RL Plant Physiol.139: 88-100 (2005)
RD PubMed: 16113211
XX
SQ
AAACCCTAA
//
ID TGA1ANTPR1A
XX
AC S000247
XX
DT 16-Feb-2001 (last modified) seki
XX
DE TGA1a binding site in tobacco (N.t.) PR1a gene; as-1-like
DE sequence; Contains two TGACG elements reminiscent of activation
DE sequence-1 (as-1); See other as-1-like sequences; TGA1a is
DE preferentially expressed in root tip meristems; TGA1a may
DE contribute to the expression of GST isoenzymes, especially in
DE root tip meristems;
XX
KW TGA1a; as-1; PR1a; xenobiotic stress; root; tip; meristem;
XX
OS tobacco (Nicotiana tabacum)
XX
RA Strompen G, Gruner R, Pfitzner UM
RT An as-1-like motif controls the level of expression of the gene
RT for the pathogenesis-related protein 1a from tobacco
RL Plant Mol Biol 37:871-883 (1998)
RD PubMed: 9678582;
XX
RA Klinedinst S, Pascuzzi P, Redman J, Desai M, Arias J
RT A xenobiotic-stress-activated transcription factor and its
RT cognate target genes are preferentially expressed in root tip
RT meristems
RL Plant Mol Biol 42: 679-688 (2000)
RD PubMed: 10809441;
XX
RA Gruner R, Strompen G, Pfitzner AJ, Pfitzner UM.
RT Salicylic acid and the hypersensitive response initiate distinct
RT signal transduction pathways in tobacco that converge on the
RT as-1-like element of the PR-1a promoter.
RL Eur J Biochem. 270: 4876-4886 (2003)
RD PubMed: 14653814
XX
SQ
CGTCATCGAGATGACG
//
ID TGACGTVMAMY
XX
AC S000377
XX
DT 23-Aug-2001 (last modified) uchi
XX
DE "TGACGT motif" found in the Vigna mungo (V.m.) alpha-Amylase
DE (Amy) gene promoter; Located between -128 and -123; Required for
DE high level expression of alpha-Amylase in the cotyledons of the
DE germinated seeds; See S000234;
XX
KW alpha-Amylase; cotyledon; seed germination; seed;
XX
OS Vigna mungo
XX
RA Yamauchi D
RT A TGACGT Motif in the 5'-Upstream Region of alpha-Amylase Gene
RT from Vigna mungo is a cis-Element for Expression in Cotyledons of
RT Germinated Seeds
RL Plant Cell Physiol 42: 635-641 (2001)
RD PubMed: 11427683;
XX
SQ
TGACGT
//
ID TGTCACACMCUCUMISIN
XX
AC S000422
XX
DT 29-Sep-2003 (last modified) kehi
XX
DE "TGTCACA motif" found in the region (from -254 to -215) of
DE cucumisin (a subtilisin-like serine protease) in the fruit of
DE melon (Cucumis melo L.); A novel enhancer element necessary for
DE fruit-specific expression of the cucumisin gene;
XX
KW cucumisin; fruit;
XX
OS Cucumis melo L. (melon)
XX
RA Yamagata H, Yonesu K, Hirata A, Aizono Y.
RT TGTCACA motif is a novel cis-regulatory enhancer element involved
RT in fruit-specific expression of the cucumisin gene.
RL J Biol Chem. 277:11582-11590 (2002)
RD PubMed: 11782472;
XX
SQ
TGTCACA
//
ID TL1ATSAR
XX
AC S000473
XX
DT 13-August-2005 (last modified) kehi
XX
DE "TL1", a consensus sequence overrepresented in the promoter
DE regions of all 13 NPR1-responsive ER-resident genes surveyed;
DE NPR1 is "Nonexpressor of pathogenesis-related genes 1", also
DE known as NIM1;
XX
KW SAR; ER; PR; NIM1;
XX
OS Arabidopsis thaliana
XX
RA Wang D, Weaver ND, Kesarwani M, Dong X.
RT Induction of protein secretory pathway is required for systemic
RT acquired resistance.
RL Science 308: 1036-1040 (2005)
RC in silico
RD PubMed: 15890886
XX
SQ
CTGAAGAAGAA
//
ID TOPOISOM
XX
AC S000112
XX
DT 13-Feb-2001 (last modified) kehi
XX
DE Topoisomerase cleavage site consensus sequence; Motif found in
DE SAR (scaffold attachment region; or matrix attachment region,
DE MAR); W=T/A,
XX
KW MAR; SAR; topoisomeras; scaffold; matrix;
XX
OS fruit fly; Drosophila melanogaster; fly;
XX
RA Sander M, Hsieh T
RT Drosophila topoisomerase II double-strand DNA cleavage: analysis
RT of DNA sequence homology at the cleavage site.
RL Nucleic Acid Res 13:1057-1072 (1985)
RD PubMed: 2987816; GenBank: M30907, M30908;
XX
RA Gasser SM, Amati BB, Cardenas ME, Hofmann JFX
RT Studies on scaffold attachment sites and their relation to genome
RT function.
RL Intnatl Rev Cyto 119:57-96 (1989)
RC Review
RD PubMed: 2695485;
XX
SQ
GTNWAYATTNATNNG
//
ID TRANSINITDICOTS
XX
AC S000201
XX
DT 3-May-1998 (last modified) kehi
XX
DE Context sequence of translational initiation codon in dicots;
DE M=A/C;
XX
KW Translation; Initiation;
XX
OS dicots;
XX
RA Joshi CP, Zhou H, Huang X, Chiang VL
RT Context sequences of translation initiation codon in plants
RL Plant Mol Biol 35:993-1001 (1997)
RD PubMed: 9426620;
XX
SQ
AMNAUGGC
//
ID TRANSINITMONOCOTS
XX
AC S000202
XX
DT 3-May-1998 (last modified) kehi
XX
DE Context sequence of translational initiation codon in monocots;
DE R=A/G; M=A/C;
XX
KW Translation; Initiation;
XX
OS monocots;
XX
RA Joshi CP, Zhou H, Huang X, Chiang VL
RT Context sequences of translation initiation codon in plants
RL Plant Mol Biol 35:993-1001 (1997)
RD PubMed: 9426620;
XX
SQ
RMNAUGGC
//
ID TRANSTART
XX
AC S000113
XX
DT 17-May-1998 (last modified) kehi
XX
DE plant consensus sequence for translation start site;
XX
KW translation;
XX
OS rice (Oryza sativa);
XX
RA Joshi CP
RT An inspection of the domain between putative TATA box and
RT translation start site in 79 plant genes.
RL Nucleic Acids Res 15:6643-6653 (1987)
RD PubMed: 3628002;
XX
RA de Pater S, Hensgens LAM, Schilperoort RA
RT Structure and expression of a light-inducible shoot-specific rice
RT gene.
RL Plant Mol Biol 15:399-406 (1990)
RD PubMed: 2103460; GenBank: X51911;
XX
SQ
TAAACAATGGCT
//
ID UP1ATMSD
XX
AC S000471
XX
DT 13-August-2005 (last modified) kehi
XX
DE "Up1" motif found in 162 of the 1184 up-regulated genes after
DE main stem decapitation in Arabidopsis; W=A/T; See also S000470,
DE S000472;
XX
KW Axillary bud outgrowth;
XX
OS Arabidopsis thaliana
XX
RA Tatematsu K, Ward S, Leyser O, Kamiya Y, Nambara E.
RT Identification of cis-elements that regulate gene expression
RT during initiation of axillary bud outgrowth in Arabidopsis.
RL Plant Physiology 138: 757-766 (2005)
RD PubMed: 15908603
XX
SQ
GGCCCAWWW
//
ID UP2ATMSD
XX
AC S000472
XX
DT 13-August-2005 (last modified) kehi
XX
DE "Up2" motif found in 193 of the 1184 up-regulated genes after
DE main stem decapitation in Arabidopsis; W=A/T; See also S000470,
DE S000471;
XX
KW Axillary bud outgrowth;
XX
OS Arabidopsis thaliana
XX
RA Tatematsu K, Ward S, Leyser O, Kamiya Y, Nambara E.
RT Identification of cis-elements that regulate gene expression
RT during initiation of axillary bud outgrowth in Arabidopsis.
RL Plant Physiology 138: 757-766 (2005)
RD PubMed: 15908603
XX
SQ
AAACCCTA
//
ID UPRE1AT
XX
AC S000428
XX
DT 04-January-2007 (last modified) kehi
XX
DE "ERSEII-like sequence" found in the plant UPRE (unfolded protein
DE response element) in A.t.; See S000429; Either of ERSEII or XBP1
DE binding sites is essential and sufficient for the UPR; See
DE S000425, S000426;
XX
KW UPR; UPRE; unfolded protein response; ERSEII; ERSE;
XX
OS Arabidopsis thaliana
XX
RA Oh DH, Kwon CS, Sano H, Chung WI, Koizumi N.
RT Conservation between animals and plants of the cis-acting element
RT involved in the unfolded protein response.
RL Biochem Biophys Res Commun. 301:225-230 (2003)
RD PubMed: 12535667;
XX
RA Martinez IM, Chrispeels MJ.
RT Genomic analysis of the unfolded protein response in Arabidopsis
RT shows its connection to important cellular processes.
RL Plant Cell. 15:561-576 (2003)
RD PubMed: 12566592;
XX
RA Iwata Y, Koizumi N.
RT An Arabidopsis transcription factor, AtbZIP60, regulates the
RT endoplasmic reticulum stress response in a manner unique to
RT plants.
RL Proc Natl Acad Sci U S A. 102: 5280-5285. (2005)
RD PubMed: 15781873
XX
RA Tajima H, Koizumi N.
RT Induction of BiP by sugar independent of a cis-element for the
RT unfolded protein response in Arabidopsis thaliana.
RL Biochem Biophys Res Commun. 346:926-930 (2006)
RD PubMed: 16781668
XX
SQ
ATTGGTCCACG
//
ID UPRE2AT
XX
AC S000429
XX
DT 04-January-2007 (last modified) kehi
XX
DE "XBP1 binding site-like sequence" found in the plant UPRE
DE (unfolded protein response element) in A.t.; See S000428; Either
DE of ERSEII or XBP1 binding sites is essential and sufficient for
DE the UPR; See S000425 (CCACGTCA), S000426;
XX
KW UPR; UPRE; unfolded protein response; ERSEII; ERSE;
XX
OS Arabidopsis thaliana
XX
RA Oh DH, Kwon CS, Sano H, Chung WI, Koizumi N.
RT Conservation between animals and plants of the cis-acting element
RT involved in the unfolded protein response.
RL Biochem Biophys Res Commun. 301:225-230 (2003)
RD PubMed: 12535667
XX
RA Martinez IM, Chrispeels MJ.
RT Genomic analysis of the unfolded protein response in Arabidopsis
RT shows its connection to important cellular processes.
RL Plant Cell. 15:561-576 (2003)
RD PubMed: 12566592
XX
RA Iwata Y, Koizumi N.
RT An Arabidopsis transcription factor, AtbZIP60, regulates the
RT endoplasmic reticulum stress response in a manner unique to
RT plants.
RL Proc Natl Acad Sci U S A. 102: 5280-5285. (2005)
RD PubMed: 15781873
XX
RA Tajima H, Koizumi N.
RT Induction of BiP by sugar independent of a cis-element for the
RT unfolded protein response in Arabidopsis thaliana.
RL Biochem Biophys Res Commun. 346:926-930 (2006)
RD PubMed: 16781668
XX
SQ
CCACGTCATC
//
ID UPRMOTIFIAT
XX
AC S000425
XX
DT 29-Sep-2003 (last modified) kehi
XX
DE "Motif I" in the conserved UPR (unfolded protein response)
DE cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90,
DE SBR-like, Ca-ATPase 4, CNX1, PDI, etc.; See S000429 (CCACGTCATC);
DE See also S000426, S000428, S000429;
XX
KW UPR; unfolded protein response;
XX
OS Arabidopsis thaliana
XX
RA Martinez IM, Chrispeels MJ.
RT Genomic analysis of the unfolded protein response in Arabidopsis
RT shows its connection to important cellular processes.
RL Plant Cell. 15:561-576 (2003)
RD PubMed: 12566592;
XX
RA Oh DH, Kwon CS, Sano H, Chung WI, Koizumi N.
RT Conservation between animals and plants of the cis-acting element
RT involved in the unfolded protein response.
RL Biochem Biophys Res Commun. 301:225-230 (2003)
RD PubMed: 12535667;
XX
SQ
CCACGTCA
//
ID UPRMOTIFIIAT
XX
AC S000426
XX
DT 29-Sep-2003 (last modified) kehi
XX
DE "Motif II" in the conserved UPR (unfolded protein response)
DE cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90,
DE SBR-like, Ca-ATPase 4, CNX1, PDI, etc.; See S000425, S000428,
DE S000429;
XX
KW UPR; unfolded protein response;
XX
OS Arabidopsis thaliana
XX
RA Martinez IM, Chrispeels MJ.
RT Genomic analysis of the unfolded protein response in Arabidopsis
RT shows its connection to important cellular processes.
RL Plant Cell. 15:561-576 (2003)
RD PubMed: 12566592;
XX
RA Oh DH, Kwon CS, Sano H, Chung WI, Koizumi N.
RT Conservation between animals and plants of the cis-acting element
RT involved in the unfolded protein response.
RL Biochem Biophys Res Commun. 301:225-230 (2003)
RD PubMed: 12535667;
XX
SQ
CCNNNNNNNNNNNNCCACG
//
ID VOZATVPP
XX
AC S000456
XX
DT 29-November-2004 (last modified) kehi
XX
DE "VOZ-binding sequence" found in the promoter of A. thaliana
DE V-PPase (vacuolar H+-pyrophosphatase) gene; Involved in its
DE expression during pollen development; one-zinc finger;(Mitsuda et
DE al., 2004);
XX
KW VOZ; V-PPase; pollen;
XX
OS Arabidopsis thaliana
XX
RA Mitsuda N, Hisabori T, Takeyasu K, Sato MH.
RT VOZ; isolation and characterization of novel vascular plant
RT transcription factors with a one-zinc finger from Arabidopsis
RT thaliana.
RL Plant Cell Physiol. 45: 845-854 (2004).
RD PubMed: 15295067
XX
SQ
GCGTNNNNNNNACGC
//
ID VSF1PVGRP18
XX
AC S000249
XX
DT 19-August-2004 (last modified) kehi
XX
DE VSF-1 binding site in French bean (P.v.) grp1.8 gene promoter;
DE VSF-1 is a tomato bZIP transcription factor; VSF-1 binding site
DE is found in 28 bp vs-1 element; This sequence controls vascular
DE gene expression in transgenic tobacco; "VS-1" found in bean
DE grp1.8 gene promoter; Located between -203 and -176; Partially
DE overlaps with NRE; Confers xylem-specific expression;
XX
KW VSF-1; vascular; grp1.8; VS-1; bZIP; Xylem;
XX
OS French bean (Phaseolus vulgaris); tomato (Lycopersicon
OS esculentum); tobacco (Nicotiana tabacum);
XX
RA Ringli C, Keller B
RT Specific interaction of the tomato bZIP transcription factor
RT VSF-1 with a non-palindromic DNA sequence that controls vascular
RT gene expression
RL Plant Mol Biol 37:977-988 (1998)
RD PubMed: 9700070;
XX
RA Torres-Schumann S, Ringli C, Heierli D, Amrhein N, Keller B.
RT In vitro binding of the tomato bZIP transcriptional activator
RT VSF-1 to a regulatory element that controls xylem-specific gene
RT expression
RL Plant J 9:283-296 (1996)
RD PubMed: 8919907;
XX
SQ
GCTCCGTTG
//
ID WARBNEXTA
XX
AC S000241
XX
DT 11-0ct-1999 (last modified) kehi
XX
DE "WAR (wounding activating region)" in Brassica napus (B.n.) extA
DE extensin gene;
XX
KW wounding; ext; extensin;
XX
OS Brassica napus
XX
RA Elliott KA , Shirsat AH
RT Promoter regions of the extA extensin gene from Brassica napus
RT control activation in response to wounding and tensile stress
RL Plant Mol Biol 37:675-687 (1998)
RD PubMed: 9687071;
XX
SQ
GTACGTGTTATAAAACGTGT
//
ID WBBOXPCWRKY1
XX
AC S000310
XX
DT 22-June-2006 (last modified) kehi
XX
DE "WB box"; WRKY proteins bind specifically to the DNA sequence
DE motif (T)(T)TGAC(C/T), which is known as the W box; Found in
DE amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley,
DE and wild oat, PR1 gene in parsley, and a transcription factor
DE gene in Arabidopsis; The motif was initially registered in
DE PLACEdb as TTGACT, and was corrected to TTGACY on 22 June, 2006;
DE Y=C/T;
XX
KW W box; WRKY;
XX
OS Ipomoea batatas (sweet potato); Triticum aestivum (wheat);
OS Hordeum vulgare (barley); Avena fatua (wild oat); Petroselium
OS crispum (parsley); Arabidopsis thaliana;
XX
RA Ishiguro S, Nakamura K.
RT Characterization of a cDNA encoding a novel DNA-binding protein,
RT SPF1, that recognizes SP8 sequences in the 5' upstream regions of
RT genes coding for sporamin and beta-amylase from sweet potato.
RL Mol Gen Genet. 244:563-571.(1994)
RD PubMed: 7969025
XX
RA Rushton PJ, Macdonald H, Huttly AK, Lazarus CM, Hooley R.
RT Members of a new family of DNA-binding proteins bind to a
RT conserved cis-element in the promoters of alpha-Amy2 genes.
RL Plant Mol Biol. 29:691-702 (1995)
RD PubMed: 8541496
XX
RA Rushton PJ, Torres JT, Parniske M, Wernert P, Hahlbrock K,
RA Somssich IE.
RT Interaction of elicitor-induced DNA-binding proteins with
RT elicitor response elements in the promoters of parsley PR1
RT genes.
RL EMBO J. 15:5690-5700 (1996)
RD PubMed: 8896462
XX
RA de Pater S, Greco V, Pham K, Memelink J, Kijne J.
RT Characterization of a zinc-dependent transcriptional activator
RT from Arabidopsis.
RL Nucleic Acids Res. 24:4624-4631 (1996)
RD PubMed: 8972846
XX
RA Eulgem T, Rushton PJ, Robatzek S, Somssich IE
RT The WRKY superfamily of plant transcription factors
RL Trends Plant Sci 5: 199-206 (2000)
RC Review
RD PubMed: 10785665;
XX
SQ
TTTGACY
//
ID WBOXATNPR1
XX
AC S000390
XX
DT 23-June-2006 (last modified) kehi
XX
DE "W-box" found in promoter of Arabidopsis thaliana (A.t.) NPR1
DE gene; Located between +70 and +79 in tandem; They were recognized
DE specifically by salicylic acid (SA)-induced WRKY DNA binding
DE proteins; See S000142 (SQ=TTGACC); See S000310 (SQ=TTTGACY); A
DE cluster of WRKY binding sites act as negative regulatory elements
DE for the inducible expression of AtWRKY18 (Chena and Chen, 2002);
DE See also S000142;
XX
KW NPR1; WRKY; WRKY18; disease resistance; SA; W box;
XX
OS Arabidopsis thaliana
XX
RA Yu D, Chen C, Chen Z
RT Evidence for an important role of WRKY DNA binding proteins in
RT the regulation of NPR1 gene expression
RL Plant Cell 13: 1527-1540 (2001)
RD PubMed: 11449049;
XX
RA Chen W, Provart NJ, Glazebrook J, Katagiri F, Chang HS, Eulgem T,
RA Mauch F, Luan S, Zou G, Whitham SA, Budworth PR, Tao Y, Xie
RT Expression profile matrix of Arabidopsis transcription factor
RT genes suggests their putative functions in response to
RT environmental stresses
RL Plant Cell 14: 559-574 (2002)
RD PubMed: 11910004;
XX
RA Eulgem T, Rushton PJ, Robatzek S, Somssich IE.
RT The WRKY superfamily of plant transcription factors.
RL Trends Plant Sci. 5:199-206. (2000)
RC Review.
RD PubMed: 10785665
XX
RA Chen C, Chen Z.
RT Potentiation of developmentally regulated plant defense response
RT by AtWRKY18, a pathogen-induced Arabidopsis transcription
RT factor.
RL Plant Physiol. 129:706-716 (2002)
RD PubMed: 12068113
XX
RA Maleck K, Levine A, Eulgem T, Morgan A, Schmid J, Lawton KA,
RA Dangl JL, Dietrich RA.
RT The transcriptome of Arabidopsis thaliana during systemic
RT acquired resistance.
RL Nat Genet. 26:403-410 (2000)
RD PubMed: 11101835
XX
RA Xu X, Chen C, Fan B, Chen Z
RT Physical and Functional Interactions between Pathogen-Induced
RT Arabidopsis WRKY18, WRKY40, and WRKY60 Transcription Factors.
RL Plant Cell 18:1310-1326 (2006)
XX
SQ
TTGAC
//
ID WBOXGACAD1A
XX
AC S000448
XX
DT 19-August-2004 (last modified) kehi
XX
DE W-box found in the promoter region of the CAD1-A (cotton (+)
DE delta-cadinene synthase-A) gene (located in the region -340 to
DE -327) of cotton (G.a); Binding site of GaWRKY1; GaWRKY1 regulates
DE sesquiterpene biosynthesis in cotton; See S000390 (TTGAC),
DE S000142 (TTGACC);
XX
KW W-box; TGAC; CAD; WRKY;
XX
OS Gossypium arboreum (cotton)
XX
RA Xu YH, Wang JW, Wang S, Wang JY, Chen XY.
RT Characterization of GaWRKY1, a cotton transcription factor that
RT regulates the sesquiterpene synthase gene (+)-delta-cadinene
RT synthase-A.
RL Plant Physiol. 135:507-515(2004)
RD PubMed: 15133151
XX
SQ
AGTCAAAATTGACC
//
ID WBOXHVISO1
XX
AC S000442
XX
DT 28-Jan-2004 (last modified) kehi
XX
DE SUSIBA2 bind to W-box element in barley iso1 (encoding
DE isoamylase1) promoter;
XX
KW sugar; SURE; patatin; WRKY; isoamylase; SUSIBA2;
XX
OS Hordeum vulgare (barley)
XX
RA Sun C, Palmqvist S, Olsson H, Boren M, Ahlandsberg S, Jansson C.
RT A novel WRKY transcription factor, SUSIBA2, participates in sugar
RT signaling in barley by binding to the sugar-responsive elements
RT of the iso1 promoter.
RL Plant Cell 15: 2076-2092 (2003)
RD PubMed: 12953112;
XX
SQ
TGACT
//
ID WBOXNTCHN48
XX
AC S000508
XX
DT 04-January-2007 (last modified) kehi
XX
DE "W box" identified in the region between -125 and -69 of a
DE tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and
DE NtWRKY4 bound to W box; NtWRKYs possibly involved in
DE elicitor-respsonsive transcription of defense genes in tobacco;
DE Y=C/T; see also S000442 (TGACT) and S000447 (TGAC);
XX
KW W-box; W box; WRKY; elicitor;
XX
OS Nicotiana tabacum (tobacco)
XX
RA Yamamoto S, Nakano T, Suzuki K, Shinshi H.
RT Elicitor-induced activation of transcription via W box-related
RT cis-acting elements from a basic chitinase gene by WRKY
RT transcription factors in tobacco.
RL Biochim Biophys Acta. 1679:279-287(2004).
RD PubMed: 15358520
XX
SQ
CTGACY
//
ID WBOXNTERF3
XX
AC S000457
XX
DT 29-November-2004 (last modified) kehi
XX
DE "W box" found in the promoter region of a transcriptional
DE repressor ERF3 gene in tobacco; May be involved in activation of
DE ERF3 gene by wounding;(Nishiuchi et al., 2004) Y=C/T; See
DE S000142, S000390, S000442, S000447;
XX
KW W box; ERF3; wounding;
XX
OS Nicotiana tabacum (tobacco)
XX
RA Nishiuchi T, Shinshi H, Suzuki K.
RT Rapid and transient activation of transcription of the ERF3 gene
RT by wounding in tobacco leaves: Possible involvement of NtWRKYs
RT and autorepression.
RL J Biol Chem. 279: 55355-55361 (2004)
RD PubMed: 15509567
XX
SQ
TGACY
//
ID WINPSTPIIIK
XX
AC S000495
XX
DT 10-May-2006 (last modified) kehi
XX
DE Binding site of wound-inducible nuclear protein from wounded
DE tomato leaves; Found in the promoter region of a protease
DE inhibitor IIK gene from potato (S.t.);
XX
KW wound; wounding;
XX
OS Solanum tuberosum (potato)
XX
RA Palm CJ, Costa MA, An G, Ryan CA.
RT Wound-inducible nuclear protein binds DNA fragments that regulate
RT a proteinase inhibitor II gene from potato.
RL Proc Natl Acad Sci U S A. 87: 603-607 (1990)
RD PubMed: 2405385
XX
SQ
AAGCGTAAGT
//
ID WRECSAA01
XX
AC S000496
XX
DT 10-May-2006 (last modified) kehi
XX
DE "Wound-responsive element (WRE)" found in the promoter region of
DE cucumber (C.s.) ascorbate oxidase gene, CsAAO1; Binding site of
DE proteins in tobacco nuclear extracts; W=A/T; S=C/G;
XX
KW wound; AAO; wounding;
XX
OS Cucumis sativas (cucumber)
XX
RA Palm CJ, Costa MA, An G, Ryan CA.
RT Wound-inducible nuclear protein binds DNA fragments that regulate
RT a proteinase inhibitor II gene from potato.
RL Proc Natl Acad Sci U S A. 87: 603-607 (1990)
RD PubMed: 2405385
XX
SQ
AAWGTATCSA
//
ID WRKY71OS
XX
AC S000447
XX
DT 22-June-2006 (last modified) kehi
XX
DE "A core of TGAC-containing W-box" of, e.g., Amy32b promoter;
DE Binding site of rice WRKY71, a transcriptional repressor of the
DE gibberellin signaling pathway; Parsley WRKY proteins bind
DE specifically to TGAC-containing W box elements within the
DE Pathogenesis-Related Class10 (PR-10) genes (Eulgem et al., 1999);
DE See S000390 (TTGAC), S000442 (TGACT);
XX
KW WRKY; GA; MYB; W box; TGAC; PR proteins;
XX
OS Oryza sativa (rice); Petroselinum crispum (parsley);
XX
RA Zhang ZL, Xie Z, Zou X, Casaretto J, Ho TH, Shen QJ.
RT A rice WRKY gene encodes a transcriptional repressor of the
RT gibberellin signaling pathway in aleurone cells.
RL Plant Physiol. 134:1500-1513(2004)
RD PubMed: 15047897
XX
RA Xie Z, Zhang ZL, Zou X, Huang J, Ruas P, Thompson D, Shen QJ.
RT Annotations and functional analyses of the rice WRKY gene
RT superfamily reveal positive and negative regulators of abscisic
RT acid signaling in aleurone cells.
RL Plant Physiol. 137:176-189 (2005)
RD PubMed: 15618416
XX
RA Eulgem T, Rushton PJ, Schmelzer E, Hahlbrock K, Somssich IE.
RT Early nuclear events in plant defence signalling: rapid gene
RT activation by WRKY transcription factors.
RL EMBO J. 18:4689-4699 (1999)
RD PubMed: 10469648
XX
RA Eulgem T, Rushton PJ, Robatzek S, Somssich IE.
RT The WRKY superfamily of plant transcription factors.
RL Trends Plant Sci. 5:199-206. (2000)
RC Review.
RD PubMed: 10785665
XX
SQ
TGAC
//
ID WUSATAg
XX
AC S000433
XX
DT 27-Jan-2004 (last modified) kehi
XX
DE Target sequence of WUS in the intron of AGAMOUS gene in
DE Arabidopsis; See Lohmann et al. Cell 105:793-803 (2003);
XX
OS Oryza sativa (rice)
XX
RA Kamiya N, Nagasaki H, Morikami A, Sato Y, Matsuoka M.
RT Isolation and characterization of arice WUSCHEL-tyope homoebox
RT gene that is specifically expressed in the central cells of a
RT quiescent center in the root apical meristem.
RL Plant J. 35: 429-441 (2003)
RD PubMed: 12904206;
XX
SQ
TTAATGG
//
ID XYLAT
XX
AC S000510
XX
DT 04-January-2007 (last modified) kehi
XX
DE cis-element identified among the promoters of the "core xylem
DE gene set";
XX
KW secondary xylem; wood formation;
XX
OS Arabidopsis thaliana
XX
RA Ko JH, Beers EP, Han KH.
RT Global comparative transcriptome analysis identifies gene network
RT regulating secondary xylem development in Arabidopsis thaliana.
RL Mol Genet Genomics. 276:517-531 (2006)
RC in silico; consensus;
RD PubMed: 16969662
XX
SQ
ACAAAGAA
//
ID YREGIONNTPRB1B
XX
AC S000365
XX
DT 16-Feb-2001 (last modified) seki
XX
DE "Y region" found in tobacco (N.t.) PRB-1b gene promoter; Located
DE at -179 to -154; Binding site of nuclear protein; Required for
DE ethylene induction; See S000364;
XX
KW PR-1; PRB-1b; ethylene; Y;
XX
OS Tobacco (Nicotiana tabacum)
XX
RA Meller Y, Sessa G, Eyal Y, Fluhr R
RT DNA-protein interactions on a cis-DNA element essential for
RT ethylene regulation
RL Plant Mol Biol 23: 453-463 (1993)
RD PubMed: 8219081;
XX
SQ
TGTGACATTGAAATTCTTTGACTTTA
//
ID ZDNAFORMINGATCAB1
XX
AC S000321
XX
DT 13-August-2005 (last modified) kehi
XX
DE "Z-DNA-forming sequence" found in the Arabidopsis (A.t.)
DE chlorophyll a/b binding protein gene (cab1) promoter; Involved in
DE light-dependent developmental expression of the gene; "Z-box";
DE Activation of Z-box containing promoters is regulated by
DE downstream regulatory components, COP1 and HY5; phyB and CRY1
DE photoreceptors act redundantly to induce Z-box containing
DE promoters in white light;
XX
KW cab1; light; Z-DNA; leaf; shoot; HY5; COP1; LRE; Z-box; ZBF1;
KW Z-box binding factor;
XX
OS Arabidopsis thaliana
XX
RA Ha SB, An G
RT Identification of upstream regulatory elements involved in the
RT developmental expression of the Arabidopsis thaliana cab1 gene.
RL Proc Natl Acad Sci USA 85: 8017-8021 (1988)
RD PubMed: 3054877
XX
RA Yadav V, Kundu S, Chattopadhyay D, Negi P, Wei N, Deng XW,
RA Chattopadhyay S
RT Light regulated modulation of Z-box containing promoters by
RT photoreceptors and downstream regulatory components, COP1 and
RT HY5, in Arabidopsis
RL Plant J. 31: 741-753 (2002)
RD PubMed: 12220265;
XX
RA Yadav V, Mallappa C, Gangappa SN, Bhatia S, Chattopadhyay S.
RT A Basic Helix-Loop-Helix Transcription Factor in Arabidopsis,
RT MYC2, Acts as a Repressor of Blue Light-Mediated Photomorphogenic
RT Growth.
RL Plant Cell 17: 1953-1966 (2005)
RD PubMed: 15923349
XX
SQ
ATACGTGT
//